Wall clock time and date at job start Tue Mar 31 2020 20:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 119.99980 * 2 1 4 4 C 1.52996 * 109.47160 * 269.99831 * 3 2 1 5 5 C 1.52999 * 109.47320 * 180.02562 * 4 3 2 6 6 N 1.46902 * 109.47070 * 179.97438 * 5 4 3 7 7 C 1.46897 * 110.99956 * 179.97438 * 6 5 4 8 8 C 1.50695 * 109.47127 * 179.97438 * 7 6 5 9 9 O 1.21290 * 120.00328 * 359.97438 * 8 7 6 10 10 N 1.34788 * 119.99939 * 179.97438 * 8 7 6 11 11 C 1.37094 * 119.99951 * 180.02562 * 10 8 7 12 12 H 1.08001 * 120.00065 * 359.97438 * 11 10 8 13 13 C 1.38948 * 119.99853 * 180.02562 * 11 10 8 14 14 N 1.31411 * 119.99941 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 120.00011 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47205 * 59.99441 * 15 13 11 17 17 H 1.48492 * 109.47106 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.46779 * 300.00049 * 15 13 11 19 19 C 1.34779 * 120.00195 * 179.97438 * 2 1 3 20 20 O 1.21277 * 120.00298 * 179.97438 * 19 2 1 21 21 C 1.50699 * 120.00041 * 0.02562 * 19 2 1 22 22 C 1.50696 * 109.47490 * 179.97438 * 21 19 2 23 23 C 1.39866 * 125.89915 * 125.01392 * 22 21 19 24 24 C 1.35320 * 107.91898 * 179.97438 * 23 22 21 25 25 N 1.34951 * 107.74569 * 359.97438 * 24 23 22 26 26 C 1.46504 * 126.03463 * 180.02562 * 25 24 23 27 27 N 1.30844 * 125.89476 * 304.97479 * 22 21 19 28 28 H 1.08994 * 109.47442 * 269.99863 * 1 2 3 29 29 H 1.08999 * 109.46828 * 30.00602 * 1 2 3 30 30 H 1.09006 * 109.46463 * 150.00093 * 1 2 3 31 31 H 1.08998 * 109.46897 * 29.99728 * 3 2 1 32 32 H 1.09001 * 109.46928 * 149.99301 * 3 2 1 33 33 H 1.09003 * 109.46673 * 299.99760 * 4 3 2 34 34 H 1.08996 * 109.47369 * 59.99536 * 4 3 2 35 35 H 1.08998 * 109.46742 * 299.99901 * 5 4 3 36 36 H 1.09005 * 109.46986 * 59.99894 * 5 4 3 37 37 H 1.00897 * 110.99907 * 56.04246 * 6 5 4 38 38 H 1.09005 * 109.47026 * 300.00430 * 7 6 5 39 39 H 1.08998 * 109.47336 * 59.99787 * 7 6 5 40 40 H 0.97001 * 119.99669 * 359.97438 * 10 8 7 41 41 H 0.97004 * 119.99284 * 180.02562 * 14 13 11 42 42 H 1.09002 * 109.46974 * 59.99026 * 21 19 2 43 43 H 1.09000 * 109.47028 * 299.99901 * 21 19 2 44 44 H 1.07993 * 126.04141 * 359.97438 * 23 22 21 45 45 H 1.07996 * 126.12765 * 180.02562 * 24 23 22 46 46 H 1.09005 * 109.46927 * 270.02579 * 26 25 24 47 47 H 1.08994 * 109.47314 * 30.02415 * 26 25 24 48 48 H 1.08998 * 109.46715 * 150.02896 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2181 3.0351 -1.4425 6 7 3.4635 3.4588 -2.8275 7 6 4.1977 4.7305 -2.8668 8 6 4.4309 5.1318 -4.3004 9 8 4.0258 4.4276 -5.2010 10 7 5.0898 6.2735 -4.5820 11 6 5.3015 6.6389 -5.8863 12 1 4.9408 6.0118 -6.6882 13 6 5.9811 7.8155 -6.1765 14 7 6.4205 8.5784 -5.2008 15 14 6.2703 8.3131 -7.9537 16 1 4.9640 8.4742 -8.6415 17 1 7.0119 9.5989 -7.9933 18 1 7.0641 7.2618 -8.6391 19 6 2.1389 -1.1672 0.0005 20 8 3.3517 -1.1672 0.0001 21 6 1.3855 -2.4723 0.0005 22 6 2.3647 -3.6178 0.0005 23 6 2.4035 -4.6635 0.9284 24 6 3.4217 -5.4864 0.5860 25 7 4.0061 -4.9796 -0.5198 26 6 5.1508 -5.5550 -1.2304 27 7 3.3251 -3.8060 -0.8680 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3632 -0.8901 -0.5139 31 1 1.6084 2.0284 0.5138 32 1 3.1499 1.1384 0.5140 33 1 3.0417 0.9507 -1.9562 34 1 1.5002 1.8406 -1.9564 35 1 2.6293 3.7949 -0.9286 36 1 4.1705 2.9043 -0.9287 37 1 2.5992 3.5245 -3.3440 38 1 3.6152 5.5020 -2.3631 39 1 5.1567 4.6121 -2.3624 40 1 5.4134 6.8369 -3.8618 41 1 6.8946 9.4000 -5.4036 42 1 0.7591 -2.5302 -0.8896 43 1 0.7585 -2.5299 0.8903 44 1 1.7385 -4.7917 1.7696 45 1 3.7138 -6.3878 1.1042 46 1 6.0752 -5.1513 -0.8172 47 1 5.1435 -6.6386 -1.1138 48 1 5.0853 -5.3029 -2.2888 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483466070.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:57 Heat of formation + Delta-G solvation = -18.709436 kcal Electronic energy + Delta-G solvation = -27637.755753 eV Core-core repulsion = 23535.471989 eV Total energy + Delta-G solvation = -4102.283763 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.12347 -40.73891 -40.17769 -37.65392 -36.46285 -35.86229 -34.82225 -33.37019 -32.98216 -31.29491 -30.61091 -28.80086 -27.52802 -26.97176 -26.06375 -24.54332 -22.61894 -22.03470 -21.28101 -21.02600 -19.93003 -19.77056 -18.10980 -17.93013 -17.78883 -17.17993 -16.87516 -16.70871 -16.48865 -16.20004 -15.97345 -15.63341 -15.22770 -15.12024 -14.80668 -14.55300 -14.50709 -14.20536 -13.99747 -13.64736 -13.55828 -13.44070 -13.36095 -13.19216 -13.13545 -13.02179 -12.92657 -12.74804 -12.62453 -12.46200 -12.42842 -12.12856 -11.68565 -11.52437 -11.48289 -10.83958 -10.39060 -10.18674 -10.04120 -9.62122 -9.44363 -9.33878 -8.48198 -5.97495 1.02503 1.38736 1.40432 1.51877 1.67998 1.70315 1.77936 2.02230 2.21469 2.28789 2.92827 3.18553 3.49866 3.53678 3.75777 3.91263 4.00578 4.12603 4.18485 4.25876 4.34271 4.36435 4.40047 4.41603 4.45547 4.52691 4.53840 4.56919 4.63234 4.65835 4.73639 4.83441 4.85873 4.91337 5.03647 5.14019 5.17519 5.22449 5.38768 5.61311 5.72484 5.87524 6.09280 6.22902 6.39725 6.43875 6.58102 6.84579 7.10140 7.25510 7.53235 8.08849 8.68938 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016501 B = 0.001625 C = 0.001521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.423938 B =17229.987527 C =18399.834642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.617 5.617 3 C 0.123 3.877 4 C -0.119 4.119 5 C 0.067 3.933 6 N -0.691 5.691 7 C 0.066 3.934 8 C 0.435 3.565 9 O -0.625 6.625 10 N -0.571 5.571 11 C -0.338 4.338 12 H 0.078 0.922 13 C -0.013 4.013 14 N -0.919 5.919 15 Si 0.995 3.005 16 H -0.270 1.270 17 H -0.268 1.268 18 H -0.274 1.274 19 C 0.505 3.495 20 O -0.578 6.578 21 C -0.051 4.051 22 C 0.061 3.939 23 C -0.282 4.282 24 C 0.053 3.947 25 N -0.389 5.389 26 C 0.094 3.906 27 N -0.327 5.327 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.110 0.890 32 H 0.061 0.939 33 H 0.035 0.965 34 H 0.073 0.927 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.345 0.655 38 H 0.073 0.927 39 H 0.099 0.901 40 H 0.397 0.603 41 H 0.278 0.722 42 H 0.125 0.875 43 H 0.150 0.850 44 H 0.174 0.826 45 H 0.214 0.786 46 H 0.074 0.926 47 H 0.124 0.876 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.924 -25.630 19.922 35.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.350 5.350 3 C -0.001 4.001 4 C -0.158 4.158 5 C -0.062 4.062 6 N -0.324 5.324 7 C -0.066 4.066 8 C 0.223 3.777 9 O -0.512 6.512 10 N -0.209 5.209 11 C -0.467 4.467 12 H 0.096 0.904 13 C -0.212 4.212 14 N -0.560 5.560 15 Si 0.818 3.182 16 H -0.195 1.195 17 H -0.193 1.193 18 H -0.199 1.199 19 C 0.294 3.706 20 O -0.456 6.456 21 C -0.092 4.092 22 C -0.105 4.105 23 C -0.311 4.311 24 C -0.093 4.093 25 N -0.171 5.171 26 C -0.046 4.046 27 N -0.151 5.151 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.108 0.892 31 H 0.128 0.872 32 H 0.080 0.920 33 H 0.054 0.946 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.164 0.836 38 H 0.090 0.910 39 H 0.117 0.883 40 H 0.231 0.769 41 H 0.088 0.912 42 H 0.143 0.857 43 H 0.168 0.832 44 H 0.192 0.808 45 H 0.230 0.770 46 H 0.093 0.907 47 H 0.143 0.857 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.173 -25.923 18.145 33.903 hybrid contribution -0.188 1.051 0.144 1.078 sum -12.361 -24.872 18.290 33.255 Atomic orbital electron populations 1.22169 0.76517 1.04926 1.03822 1.47975 1.08746 1.05069 1.73202 1.21349 0.97775 0.85321 0.95632 1.21753 1.00145 0.96162 0.97751 1.21901 1.00109 0.96089 0.88095 1.60015 1.27495 1.30372 1.14516 1.21524 1.00898 0.91793 0.92434 1.20898 0.82569 0.82178 0.92051 1.90484 1.56375 1.54583 1.49753 1.41921 1.50222 1.20549 1.08179 1.19650 1.35802 1.06543 0.84748 0.90394 1.26071 0.95824 0.95355 1.03995 1.69671 1.38203 1.14451 1.33649 0.84963 0.78598 0.77700 0.76895 1.19540 1.19260 1.19903 1.21062 0.87725 0.86479 0.75366 1.90737 1.16421 1.87863 1.50624 1.20206 0.95520 0.85678 1.07797 1.22110 0.95974 0.97494 0.94954 1.21747 1.05723 0.97968 1.05669 1.23242 0.94853 1.01283 0.89942 1.48890 1.26746 1.18562 1.22935 1.22111 0.84722 1.00158 0.97632 1.77393 1.10050 1.01795 1.25826 0.90017 0.89925 0.89210 0.87199 0.92023 0.94573 0.90870 0.92597 0.91415 0.83637 0.90963 0.88262 0.76900 0.91214 0.85693 0.83231 0.80847 0.76956 0.90698 0.85744 0.90237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.48 10.24 127.77 1.31 1.79 16 2 N -0.62 -10.72 2.87 -846.77 -2.43 -13.15 16 3 C 0.12 2.37 5.41 86.38 0.47 2.83 16 4 C -0.12 -2.88 5.80 30.59 0.18 -2.70 16 5 C 0.07 1.73 5.69 86.30 0.49 2.22 16 6 N -0.69 -24.21 6.13 -517.94 -3.17 -27.38 16 7 C 0.07 2.43 6.17 85.56 0.53 2.96 16 8 C 0.44 21.94 7.82 87.65 0.69 22.62 16 9 O -0.63 -36.65 15.78 -3.06 -0.05 -36.70 16 10 N -0.57 -30.57 5.29 -306.98 -1.62 -32.19 16 11 C -0.34 -19.85 9.68 84.04 0.81 -19.04 16 12 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 13 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 14 N -0.92 -50.60 13.05 21.66 0.28 -50.32 16 15 Si 1.00 43.94 29.55 68.60 2.03 45.97 16 16 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 17 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 18 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 19 C 0.51 11.91 7.66 87.66 0.67 12.59 16 20 O -0.58 -20.40 15.14 -3.02 -0.05 -20.44 16 21 C -0.05 -0.80 4.83 29.10 0.14 -0.66 16 22 C 0.06 1.38 6.01 43.10 0.26 1.64 16 23 C -0.28 -4.65 10.72 21.99 0.24 -4.41 16 24 C 0.05 0.78 11.49 83.54 0.96 1.74 16 25 N -0.39 -8.11 4.01 -369.56 -1.48 -9.60 16 26 C 0.09 1.21 11.47 127.77 1.47 2.67 16 27 N -0.33 -9.44 11.92 -47.39 -0.56 -10.00 16 28 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 29 H 0.08 0.50 8.07 -2.39 -0.02 0.49 16 30 H 0.09 0.36 6.44 -2.38 -0.02 0.34 16 31 H 0.11 1.37 8.07 -2.39 -0.02 1.36 16 32 H 0.06 1.49 7.42 -2.39 -0.02 1.48 16 33 H 0.04 1.17 8.14 -2.39 -0.02 1.16 16 34 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 37 H 0.34 12.28 8.43 -89.70 -0.76 11.52 16 38 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 39 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 40 H 0.40 20.05 7.90 -92.71 -0.73 19.31 16 41 H 0.28 14.33 8.31 -92.71 -0.77 13.56 16 42 H 0.13 1.49 7.40 -2.39 -0.02 1.47 16 43 H 0.15 1.04 8.09 -2.39 -0.02 1.02 16 44 H 0.17 1.65 8.06 -2.91 -0.02 1.63 16 45 H 0.21 1.06 8.06 -2.91 -0.02 1.03 16 46 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 47 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 48 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -91.45 408.38 1.10 -90.35 By element: Atomic # 1 Polarization: 39.94 SS G_CDS: -0.51 Total: 39.43 kcal Atomic # 6 Polarization: 15.36 SS G_CDS: 8.67 Total: 24.03 kcal Atomic # 7 Polarization: -133.64 SS G_CDS: -8.99 Total: -142.64 kcal Atomic # 8 Polarization: -57.05 SS G_CDS: -0.09 Total: -57.14 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -91.45 1.10 -90.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483466070.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.640 kcal (2) G-P(sol) polarization free energy of solvation -91.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds