Wall clock time and date at job start Tue Mar 31 2020 21:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37360 * 125.82827 * 2 1 4 4 N 1.29405 * 108.82548 * 179.73107 * 3 2 1 5 5 N 1.40168 * 108.13947 * 0.38229 * 4 3 2 6 6 C 1.46502 * 126.34602 * 179.88103 * 5 4 3 7 7 C 1.53005 * 109.46859 * 269.68765 * 6 5 4 8 8 C 1.50701 * 109.46723 * 180.02562 * 7 6 5 9 9 O 1.21279 * 120.00126 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99616 * 179.97438 * 8 7 6 11 11 C 1.46927 * 120.63338 * 354.15941 * 10 8 7 12 12 C 1.53196 * 108.77564 * 126.66727 * 11 10 8 13 13 C 1.53038 * 109.31368 * 54.63314 * 12 11 10 14 14 C 1.53035 * 109.54139 * 298.63704 * 13 12 11 15 15 C 1.46927 * 120.63020 * 174.43924 * 10 8 7 16 16 H 1.09002 * 109.58879 * 113.54698 * 15 10 8 17 17 C 1.53007 * 109.58626 * 353.12052 * 15 10 8 18 18 N 1.46503 * 109.47019 * 181.76084 * 17 15 10 19 19 C 1.36930 * 119.99555 * 184.95099 * 18 17 15 20 20 H 1.08004 * 120.00768 * 359.97438 * 19 18 17 21 21 C 1.38821 * 120.00109 * 179.97438 * 19 18 17 22 22 N 1.31622 * 119.99188 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00429 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46813 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47118 * 119.99921 * 23 21 19 26 26 H 1.48502 * 109.46969 * 240.00105 * 23 21 19 27 27 C 1.34810 * 125.83416 * 179.97438 * 2 1 3 28 28 O 1.21814 * 126.30611 * 0.02562 * 27 2 1 29 29 H 1.08994 * 109.47089 * 270.02621 * 1 2 3 30 30 H 1.09002 * 109.47579 * 30.03149 * 1 2 3 31 31 H 1.09001 * 109.46695 * 150.02318 * 1 2 3 32 32 H 1.07999 * 125.59044 * 359.97222 * 3 2 1 33 33 H 1.08999 * 109.46820 * 149.68924 * 6 5 4 34 34 H 1.09001 * 109.47304 * 29.68519 * 6 5 4 35 35 H 1.08999 * 109.47275 * 60.00437 * 7 6 5 36 36 H 1.09001 * 109.46961 * 299.99964 * 7 6 5 37 37 H 1.08994 * 109.58951 * 246.45301 * 11 10 8 38 38 H 1.09003 * 109.58643 * 6.88248 * 11 10 8 39 39 H 1.09003 * 109.49461 * 294.68237 * 12 11 10 40 40 H 1.09000 * 109.49808 * 174.59076 * 12 11 10 41 41 H 1.09002 * 109.45964 * 178.61672 * 13 12 11 42 42 H 1.09000 * 109.44479 * 58.65476 * 13 12 11 43 43 H 1.09007 * 109.49900 * 301.41236 * 14 13 12 44 44 H 1.09000 * 109.50037 * 181.31928 * 14 13 12 45 45 H 1.09000 * 109.46755 * 301.75906 * 17 15 10 46 46 H 1.09001 * 109.46733 * 61.76166 * 17 15 10 47 47 H 0.96997 * 120.00017 * 4.94652 * 18 17 15 48 48 H 0.97006 * 119.99098 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2690 1.1137 0.0000 4 7 3.5065 0.7353 0.0057 5 7 3.5344 -0.6661 0.0008 6 6 4.7314 -1.5108 0.0022 7 6 5.1488 -1.8060 -1.4399 8 6 6.3798 -2.6754 -1.4385 9 8 6.8747 -3.0241 -0.3876 10 7 6.9306 -3.0654 -2.6050 11 6 6.2729 -2.7595 -3.8828 12 6 7.2771 -2.0505 -4.7969 13 6 8.5366 -2.9099 -4.9282 14 6 9.1798 -3.0892 -3.5512 15 6 8.1971 -3.8100 -2.6230 16 1 8.0215 -4.8209 -2.9908 17 6 8.7773 -3.8693 -1.2084 18 7 10.0605 -4.5756 -1.2361 19 6 10.7209 -4.8416 -0.0665 20 1 10.2962 -4.5303 0.8765 21 6 11.9366 -5.5113 -0.0925 22 7 12.4545 -5.8903 -1.2417 23 14 12.8380 -5.8735 1.5030 24 1 12.0514 -5.3456 2.6466 25 1 13.0075 -7.3410 1.6536 26 1 14.1718 -5.2211 1.4770 27 6 2.2542 -1.0929 0.0005 28 8 1.8806 -2.2524 0.0006 29 1 -0.3633 0.0005 1.0276 30 1 -0.3634 0.8897 -0.5143 31 1 -0.3633 -0.8902 -0.5135 32 1 1.9249 2.1374 -0.0004 33 1 4.5148 -2.4470 0.5167 34 1 5.5411 -0.9926 0.5160 35 1 5.3654 -0.8698 -1.9544 36 1 4.3391 -2.3241 -1.9537 37 1 5.9404 -3.6847 -4.3534 38 1 5.4166 -2.1086 -3.7063 39 1 7.5397 -1.0834 -4.3680 40 1 6.8325 -1.9037 -5.7813 41 1 9.2429 -2.4192 -5.5978 42 1 8.2694 -3.8856 -5.3340 43 1 9.4245 -2.1123 -3.1340 44 1 10.0894 -3.6817 -3.6489 45 1 8.9280 -2.8564 -0.8348 46 1 8.0851 -4.3988 -0.5537 47 1 10.4421 -4.8550 -2.0830 48 1 13.3041 -6.3580 -1.2600 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485038589.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:43 Heat of formation + Delta-G solvation = 41.400667 kcal Electronic energy + Delta-G solvation = -29777.853600 eV Core-core repulsion = 25678.176406 eV Total energy + Delta-G solvation = -4099.677194 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.69225 -40.39549 -37.52610 -37.41600 -35.92313 -34.73699 -33.14779 -32.66507 -31.89398 -30.07840 -29.61067 -27.85372 -26.30738 -24.97653 -24.26396 -23.10371 -22.54464 -21.46762 -20.98005 -20.58877 -18.86859 -17.95817 -17.11495 -17.02292 -16.65117 -16.38778 -15.86526 -15.74810 -15.35468 -14.88403 -14.46687 -14.38834 -14.17169 -14.04659 -13.95282 -13.50070 -13.29122 -13.20086 -12.95386 -12.89303 -12.70861 -12.57235 -12.41725 -12.16873 -11.97607 -11.50118 -11.40111 -10.98898 -10.92492 -10.79427 -10.68443 -10.50841 -10.49647 -10.39267 -10.31910 -9.90665 -9.60602 -8.93976 -8.82222 -8.64688 -8.33096 -6.72158 -5.62926 -2.88844 1.45685 1.63283 2.39703 2.75796 2.77836 3.13385 3.53199 3.58879 3.62198 4.09815 4.34801 4.55715 4.61286 4.63253 4.75297 4.75846 4.78390 4.87068 4.95543 5.02007 5.04599 5.23032 5.26434 5.39656 5.41666 5.46594 5.58845 5.63339 5.69316 5.72215 5.83079 5.85503 5.93060 6.01636 6.03585 6.22258 6.25780 6.29779 6.31606 6.58523 6.78602 7.14695 7.32188 7.33618 7.58814 7.77285 7.88725 8.36810 8.58828 9.67905 10.27301 10.62203 11.60875 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013575 B = 0.002645 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.187467 B =10582.361622 C =12089.860598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.564 5.564 3 C 0.249 3.751 4 N -0.277 5.277 5 N -0.449 5.449 6 C 0.175 3.825 7 C -0.158 4.158 8 C 0.516 3.484 9 O -0.515 6.515 10 N -0.606 5.606 11 C 0.108 3.892 12 C -0.134 4.134 13 C -0.121 4.121 14 C -0.127 4.127 15 C 0.140 3.860 16 H 0.071 0.929 17 C 0.160 3.840 18 N -0.738 5.738 19 C -0.222 4.222 20 H 0.071 0.929 21 C -0.021 4.021 22 N -0.939 5.939 23 Si 0.905 3.095 24 H -0.280 1.280 25 H -0.293 1.293 26 H -0.293 1.293 27 C 0.641 3.359 28 O -0.551 6.551 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.230 0.770 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.065 0.935 44 H 0.086 0.914 45 H 0.023 0.977 46 H 0.058 0.942 47 H 0.378 0.622 48 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.837 17.678 -6.705 32.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.294 5.294 3 C -0.050 4.050 4 N -0.098 5.098 5 N -0.270 5.270 6 C 0.054 3.946 7 C -0.199 4.199 8 C 0.302 3.698 9 O -0.390 6.390 10 N -0.340 5.340 11 C -0.015 4.015 12 C -0.172 4.172 13 C -0.158 4.158 14 C -0.165 4.165 15 C 0.037 3.963 16 H 0.089 0.911 17 C 0.033 3.967 18 N -0.384 5.384 19 C -0.354 4.354 20 H 0.089 0.911 21 C -0.216 4.216 22 N -0.589 5.589 23 Si 0.737 3.263 24 H -0.206 1.206 25 H -0.220 1.220 26 H -0.221 1.221 27 C 0.341 3.659 28 O -0.425 6.425 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.246 0.754 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.116 0.884 36 H 0.112 0.888 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.104 0.896 45 H 0.041 0.959 46 H 0.076 0.924 47 H 0.212 0.788 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -24.792 16.897 -5.927 30.582 hybrid contribution -0.131 -0.351 0.289 0.473 sum -24.923 16.546 -5.637 30.442 Atomic orbital electron populations 1.21814 0.74259 1.04688 1.03562 1.45966 1.08901 1.06755 1.67748 1.25942 0.85881 0.94729 0.98467 1.77038 1.18104 0.92197 1.22483 1.49088 1.06296 1.03018 1.68597 1.21259 0.83207 0.93748 0.96345 1.22086 0.97593 1.01238 0.99005 1.20212 0.84850 0.80730 0.83966 1.90853 1.61997 1.54991 1.31206 1.48142 1.23901 1.56489 1.05483 1.21727 0.95305 1.00145 0.84370 1.21918 0.96562 0.99497 0.99238 1.21549 0.96564 0.99864 0.97852 1.21941 0.98914 1.01707 0.93947 1.21608 0.81686 0.93873 0.99110 0.91105 1.21295 0.87874 0.96610 0.90893 1.42590 1.20499 1.68584 1.06718 1.19298 1.00427 1.28901 0.86742 0.91114 1.24708 0.98195 1.01957 0.96728 1.69673 1.20125 1.45853 1.23287 0.86110 0.79558 0.77503 0.83108 1.20574 1.22048 1.22075 1.16827 0.82195 0.85125 0.81797 1.91112 1.77689 1.15164 1.58487 0.90886 0.89339 0.89406 0.75367 0.87616 0.87535 0.88353 0.88791 0.91291 0.90186 0.91527 0.91087 0.91791 0.91880 0.91670 0.89556 0.95896 0.92447 0.78780 0.93833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.35 11.05 59.85 0.66 1.01 16 2 N -0.56 -4.25 3.14 -130.11 -0.41 -4.66 16 3 C 0.25 1.41 12.66 -89.11 -1.13 0.28 16 4 N -0.28 -2.65 12.53 29.87 0.37 -2.28 16 5 N -0.45 -5.25 3.63 -65.12 -0.24 -5.49 16 6 C 0.18 2.16 5.68 -4.04 -0.02 2.14 16 7 C -0.16 -1.81 4.38 -27.88 -0.12 -1.93 16 8 C 0.52 7.89 7.53 -10.99 -0.08 7.81 16 9 O -0.52 -10.01 11.55 5.56 0.06 -9.95 16 10 N -0.61 -8.77 2.97 -165.21 -0.49 -9.26 16 11 C 0.11 1.11 6.35 -3.71 -0.02 1.09 16 12 C -0.13 -1.31 6.08 -26.61 -0.16 -1.47 16 13 C -0.12 -1.44 5.88 -26.69 -0.16 -1.60 16 14 C -0.13 -2.04 5.10 -26.61 -0.14 -2.18 16 15 C 0.14 2.47 3.10 -67.59 -0.21 2.26 16 16 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 17 C 0.16 3.65 4.14 -4.04 -0.02 3.64 16 18 N -0.74 -19.93 5.38 -59.90 -0.32 -20.25 16 19 C -0.22 -6.65 9.99 -15.06 -0.15 -6.80 16 20 H 0.07 2.12 7.83 -52.48 -0.41 1.71 16 21 C -0.02 -0.64 5.50 -17.43 -0.10 -0.73 16 22 N -0.94 -29.42 13.06 55.49 0.72 -28.70 16 23 Si 0.91 23.67 29.55 -169.99 -5.02 18.64 16 24 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 26 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 27 C 0.64 7.85 8.60 -86.74 -0.75 7.10 16 28 O -0.55 -8.72 17.71 5.09 0.09 -8.63 16 29 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.09 0.01 8.14 -51.93 -0.42 -0.41 16 31 H 0.09 0.41 8.08 -51.93 -0.42 -0.01 16 32 H 0.23 0.01 8.06 -52.49 -0.42 -0.42 16 33 H 0.11 1.45 8.07 -51.93 -0.42 1.03 16 34 H 0.11 1.33 8.10 -51.93 -0.42 0.91 16 35 H 0.10 0.98 7.92 -51.93 -0.41 0.57 16 36 H 0.09 1.01 7.71 -51.93 -0.40 0.61 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.66 5.93 -51.93 -0.31 0.35 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.09 1.58 6.89 -51.93 -0.36 1.22 16 45 H 0.02 0.57 7.26 -51.93 -0.38 0.19 16 46 H 0.06 1.44 6.21 -51.93 -0.32 1.12 16 47 H 0.38 10.40 6.36 -40.82 -0.26 10.14 16 48 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 386.89 15.07 5.83 5.83 Total: -1.00 -39.31 386.89 -9.26 -48.57 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -7.47 Total: 5.56 kcal Atomic # 6 Polarization: 13.01 SS G_CDS: -2.39 Total: 10.62 kcal Atomic # 7 Polarization: -70.28 SS G_CDS: -0.36 Total: -70.64 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: 0.15 Total: -18.58 kcal Atomic # 14 Polarization: 23.67 SS G_CDS: -5.02 Total: 18.64 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -39.31 -9.26 -48.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485038589.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.966 kcal (2) G-P(sol) polarization free energy of solvation -39.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds