Wall clock time and date at job start Tue Mar 31 2020 21:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37360 * 125.82827 * 2 1 4 4 N 1.29405 * 108.82548 * 179.73107 * 3 2 1 5 5 N 1.40168 * 108.13947 * 0.38229 * 4 3 2 6 6 C 1.46502 * 126.34602 * 179.88103 * 5 4 3 7 7 C 1.53005 * 109.46859 * 269.68765 * 6 5 4 8 8 C 1.50701 * 109.46723 * 180.02562 * 7 6 5 9 9 O 1.21279 * 120.00126 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99616 * 179.97438 * 8 7 6 11 11 C 1.46927 * 120.63338 * 354.15941 * 10 8 7 12 12 C 1.53196 * 108.77564 * 126.66727 * 11 10 8 13 13 C 1.53038 * 109.31368 * 54.63314 * 12 11 10 14 14 C 1.53035 * 109.54139 * 298.63704 * 13 12 11 15 15 C 1.46927 * 120.63020 * 174.43924 * 10 8 7 16 16 H 1.09002 * 109.58879 * 113.54698 * 15 10 8 17 17 C 1.53007 * 109.58626 * 353.12052 * 15 10 8 18 18 N 1.46503 * 109.47019 * 181.76084 * 17 15 10 19 19 C 1.36930 * 119.99555 * 184.95099 * 18 17 15 20 20 H 1.08004 * 120.00768 * 359.97438 * 19 18 17 21 21 C 1.38821 * 120.00109 * 179.97438 * 19 18 17 22 22 N 1.31622 * 119.99188 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00429 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46813 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47118 * 119.99921 * 23 21 19 26 26 H 1.48502 * 109.46969 * 240.00105 * 23 21 19 27 27 C 1.34810 * 125.83416 * 179.97438 * 2 1 3 28 28 O 1.21814 * 126.30611 * 0.02562 * 27 2 1 29 29 H 1.08994 * 109.47089 * 270.02621 * 1 2 3 30 30 H 1.09002 * 109.47579 * 30.03149 * 1 2 3 31 31 H 1.09001 * 109.46695 * 150.02318 * 1 2 3 32 32 H 1.07999 * 125.59044 * 359.97222 * 3 2 1 33 33 H 1.08999 * 109.46820 * 149.68924 * 6 5 4 34 34 H 1.09001 * 109.47304 * 29.68519 * 6 5 4 35 35 H 1.08999 * 109.47275 * 60.00437 * 7 6 5 36 36 H 1.09001 * 109.46961 * 299.99964 * 7 6 5 37 37 H 1.08994 * 109.58951 * 246.45301 * 11 10 8 38 38 H 1.09003 * 109.58643 * 6.88248 * 11 10 8 39 39 H 1.09003 * 109.49461 * 294.68237 * 12 11 10 40 40 H 1.09000 * 109.49808 * 174.59076 * 12 11 10 41 41 H 1.09002 * 109.45964 * 178.61672 * 13 12 11 42 42 H 1.09000 * 109.44479 * 58.65476 * 13 12 11 43 43 H 1.09007 * 109.49900 * 301.41236 * 14 13 12 44 44 H 1.09000 * 109.50037 * 181.31928 * 14 13 12 45 45 H 1.09000 * 109.46755 * 301.75906 * 17 15 10 46 46 H 1.09001 * 109.46733 * 61.76166 * 17 15 10 47 47 H 0.96997 * 120.00017 * 4.94652 * 18 17 15 48 48 H 0.97006 * 119.99098 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2690 1.1137 0.0000 4 7 3.5065 0.7353 0.0057 5 7 3.5344 -0.6661 0.0008 6 6 4.7314 -1.5108 0.0022 7 6 5.1488 -1.8060 -1.4399 8 6 6.3798 -2.6754 -1.4385 9 8 6.8747 -3.0241 -0.3876 10 7 6.9306 -3.0654 -2.6050 11 6 6.2729 -2.7595 -3.8828 12 6 7.2771 -2.0505 -4.7969 13 6 8.5366 -2.9099 -4.9282 14 6 9.1798 -3.0892 -3.5512 15 6 8.1971 -3.8100 -2.6230 16 1 8.0215 -4.8209 -2.9908 17 6 8.7773 -3.8693 -1.2084 18 7 10.0605 -4.5756 -1.2361 19 6 10.7209 -4.8416 -0.0665 20 1 10.2962 -4.5303 0.8765 21 6 11.9366 -5.5113 -0.0925 22 7 12.4545 -5.8903 -1.2417 23 14 12.8380 -5.8735 1.5030 24 1 12.0514 -5.3456 2.6466 25 1 13.0075 -7.3410 1.6536 26 1 14.1718 -5.2211 1.4770 27 6 2.2542 -1.0929 0.0005 28 8 1.8806 -2.2524 0.0006 29 1 -0.3633 0.0005 1.0276 30 1 -0.3634 0.8897 -0.5143 31 1 -0.3633 -0.8902 -0.5135 32 1 1.9249 2.1374 -0.0004 33 1 4.5148 -2.4470 0.5167 34 1 5.5411 -0.9926 0.5160 35 1 5.3654 -0.8698 -1.9544 36 1 4.3391 -2.3241 -1.9537 37 1 5.9404 -3.6847 -4.3534 38 1 5.4166 -2.1086 -3.7063 39 1 7.5397 -1.0834 -4.3680 40 1 6.8325 -1.9037 -5.7813 41 1 9.2429 -2.4192 -5.5978 42 1 8.2694 -3.8856 -5.3340 43 1 9.4245 -2.1123 -3.1340 44 1 10.0894 -3.6817 -3.6489 45 1 8.9280 -2.8564 -0.8348 46 1 8.0851 -4.3988 -0.5537 47 1 10.4421 -4.8550 -2.0830 48 1 13.3041 -6.3580 -1.2600 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485038589.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:42 Heat of formation + Delta-G solvation = 14.032525 kcal Electronic energy + Delta-G solvation = -29779.040372 eV Core-core repulsion = 25678.176406 eV Total energy + Delta-G solvation = -4100.863966 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.40333 -41.65386 -38.66315 -38.41378 -36.82764 -36.50011 -34.34844 -33.77359 -33.43408 -31.54586 -30.77741 -28.42453 -27.74364 -26.26930 -25.32066 -24.82054 -23.37344 -22.57682 -22.14655 -21.68305 -20.10823 -19.20499 -18.69544 -17.89284 -17.73454 -17.29647 -17.03005 -16.70968 -16.48121 -16.36575 -15.61980 -15.52481 -15.43975 -15.24473 -14.95373 -14.73918 -14.63798 -14.43162 -14.17748 -13.89896 -13.77751 -13.55645 -13.47933 -13.19214 -13.06963 -12.87667 -12.85477 -12.66475 -12.40283 -12.19912 -12.08352 -12.02426 -11.84531 -11.61033 -11.41160 -11.37482 -11.05043 -10.99999 -10.23373 -9.66016 -9.63040 -8.96810 -7.97449 -5.25181 0.71422 1.10464 1.43120 1.44811 1.54126 1.55942 1.56694 1.90059 2.28415 2.55292 3.35269 3.40976 3.49731 3.63724 3.85331 3.87065 3.94089 3.99117 4.09613 4.13125 4.13612 4.25197 4.29119 4.30366 4.41968 4.54651 4.59157 4.65040 4.66538 4.67507 4.81982 4.83342 4.93734 4.95961 5.04675 5.09709 5.10774 5.19009 5.25862 5.30679 5.45371 5.46971 5.65075 5.70719 6.25539 6.41093 6.64336 6.94142 7.14974 7.31792 8.06344 8.33987 9.26414 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013575 B = 0.002645 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.187467 B =10582.361622 C =12089.860598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.558 5.558 3 C 0.281 3.719 4 N -0.316 5.316 5 N -0.457 5.457 6 C 0.179 3.821 7 C -0.135 4.135 8 C 0.508 3.492 9 O -0.567 6.567 10 N -0.603 5.603 11 C 0.100 3.900 12 C -0.126 4.126 13 C -0.115 4.115 14 C -0.119 4.119 15 C 0.149 3.851 16 H 0.066 0.934 17 C 0.172 3.828 18 N -0.745 5.745 19 C -0.241 4.241 20 H 0.062 0.938 21 C -0.074 4.074 22 N -0.967 5.967 23 Si 0.975 3.025 24 H -0.274 1.274 25 H -0.288 1.288 26 H -0.287 1.287 27 C 0.625 3.375 28 O -0.601 6.601 29 H 0.082 0.918 30 H 0.135 0.865 31 H 0.071 0.929 32 H 0.291 0.709 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.123 0.877 36 H 0.107 0.893 37 H 0.082 0.918 38 H 0.109 0.891 39 H 0.065 0.935 40 H 0.108 0.892 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.051 0.949 44 H 0.056 0.944 45 H 0.003 0.997 46 H 0.033 0.967 47 H 0.374 0.626 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.116 20.406 -8.190 35.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.285 5.285 3 C -0.017 4.017 4 N -0.138 5.138 5 N -0.276 5.276 6 C 0.057 3.943 7 C -0.175 4.175 8 C 0.297 3.703 9 O -0.446 6.446 10 N -0.337 5.337 11 C -0.021 4.021 12 C -0.164 4.164 13 C -0.153 4.153 14 C -0.158 4.158 15 C 0.045 3.955 16 H 0.084 0.916 17 C 0.046 3.954 18 N -0.390 5.390 19 C -0.373 4.373 20 H 0.080 0.920 21 C -0.266 4.266 22 N -0.618 5.618 23 Si 0.803 3.197 24 H -0.198 1.198 25 H -0.215 1.215 26 H -0.214 1.214 27 C 0.324 3.676 28 O -0.478 6.478 29 H 0.100 0.900 30 H 0.153 0.847 31 H 0.090 0.910 32 H 0.306 0.694 33 H 0.098 0.902 34 H 0.116 0.884 35 H 0.141 0.859 36 H 0.125 0.875 37 H 0.100 0.900 38 H 0.127 0.873 39 H 0.084 0.916 40 H 0.126 0.874 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.070 0.930 44 H 0.075 0.925 45 H 0.021 0.979 46 H 0.051 0.949 47 H 0.207 0.793 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -27.135 19.692 -7.449 34.345 hybrid contribution 0.466 -1.107 0.776 1.431 sum -26.669 18.585 -6.673 33.184 Atomic orbital electron populations 1.22178 0.71767 1.06212 1.04723 1.46181 1.10207 1.05884 1.66267 1.27179 0.84314 0.96112 0.94059 1.77079 1.20471 0.90350 1.25860 1.48983 1.05725 1.04229 1.68712 1.20979 0.83565 0.92996 0.96717 1.21912 0.95555 1.01316 0.98749 1.20927 0.85551 0.80489 0.83347 1.90830 1.63725 1.56975 1.33088 1.48235 1.22681 1.55546 1.07229 1.22123 0.96073 1.01627 0.82254 1.21910 0.95086 0.98517 1.00922 1.21532 0.97835 1.01118 0.94783 1.21819 0.97654 0.99918 0.96397 1.21233 0.83680 0.94683 0.95875 0.91600 1.21141 0.85825 0.94321 0.94113 1.42740 1.21753 1.68782 1.05769 1.19545 1.01148 1.29241 0.87403 0.92003 1.25545 0.98895 1.01910 1.00294 1.69815 1.20425 1.46343 1.25248 0.85053 0.78157 0.77274 0.79173 1.19844 1.21497 1.21365 1.17140 0.82839 0.85558 0.82077 1.91057 1.78539 1.17416 1.60785 0.89961 0.84721 0.90970 0.69428 0.90154 0.88443 0.85885 0.87463 0.89970 0.87281 0.91642 0.87395 0.90463 0.91200 0.92981 0.92495 0.97877 0.94923 0.79327 0.93844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.38 11.05 127.77 1.41 1.79 16 2 N -0.56 -7.03 3.14 -683.70 -2.15 -9.18 16 3 C 0.28 2.11 12.66 179.82 2.28 4.39 16 4 N -0.32 -5.42 12.53 -59.41 -0.74 -6.16 16 5 N -0.46 -10.58 3.63 -478.01 -1.73 -12.31 16 6 C 0.18 4.66 5.68 86.38 0.49 5.15 16 7 C -0.13 -3.01 4.38 29.85 0.13 -2.88 16 8 C 0.51 16.02 7.53 87.66 0.66 16.68 16 9 O -0.57 -23.75 11.55 -3.02 -0.03 -23.78 16 10 N -0.60 -17.39 2.97 -795.00 -2.36 -19.76 16 11 C 0.10 1.79 6.35 86.36 0.55 2.34 16 12 C -0.13 -2.03 6.08 30.67 0.19 -1.85 16 13 C -0.12 -2.54 5.88 30.62 0.18 -2.36 16 14 C -0.12 -3.94 5.10 30.67 0.16 -3.78 16 15 C 0.15 5.48 3.10 44.98 0.14 5.62 16 16 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 17 C 0.17 8.40 4.14 86.38 0.36 8.76 16 18 N -0.75 -42.49 5.38 -343.43 -1.85 -44.34 16 19 C -0.24 -15.06 9.99 84.04 0.84 -14.22 16 20 H 0.06 3.88 7.83 -2.91 -0.02 3.86 16 21 C -0.07 -4.59 5.50 84.86 0.47 -4.12 16 22 N -0.97 -61.92 13.06 21.65 0.28 -61.64 16 23 Si 0.97 49.63 29.55 68.60 2.03 51.66 16 24 H -0.27 -13.49 7.11 99.48 0.71 -12.78 16 25 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 26 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 27 C 0.62 15.12 8.60 178.99 1.54 16.66 16 28 O -0.60 -19.69 17.71 -4.71 -0.08 -19.77 16 29 H 0.08 0.23 8.14 -2.39 -0.02 0.21 16 30 H 0.13 -0.67 8.14 -2.39 -0.02 -0.69 16 31 H 0.07 0.58 8.08 -2.39 -0.02 0.56 16 32 H 0.29 -1.83 8.06 -2.91 -0.02 -1.85 16 33 H 0.08 2.45 8.07 -2.39 -0.02 2.43 16 34 H 0.10 2.64 8.10 -2.39 -0.02 2.62 16 35 H 0.12 2.18 7.92 -2.39 -0.02 2.16 16 36 H 0.11 2.16 7.71 -2.39 -0.02 2.15 16 37 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.11 1.37 5.93 -2.39 -0.01 1.35 16 39 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 44 H 0.06 2.19 6.89 -2.39 -0.02 2.18 16 45 H 0.00 0.18 7.26 -2.39 -0.02 0.16 16 46 H 0.03 1.78 6.21 -2.39 -0.01 1.76 16 47 H 0.37 21.65 6.36 -92.71 -0.59 21.06 16 48 H 0.25 15.48 8.31 -92.70 -0.77 14.71 16 Total: -1.00 -92.92 386.89 3.12 -89.80 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: 0.38 Total: 23.32 kcal Atomic # 6 Polarization: 22.78 SS G_CDS: 9.38 Total: 32.16 kcal Atomic # 7 Polarization: -144.83 SS G_CDS: -8.55 Total: -153.39 kcal Atomic # 8 Polarization: -43.44 SS G_CDS: -0.12 Total: -43.56 kcal Atomic # 14 Polarization: 49.63 SS G_CDS: 2.03 Total: 51.66 kcal Total: -92.92 3.12 -89.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485038589.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.836 kcal (2) G-P(sol) polarization free energy of solvation -92.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds