Wall clock time and date at job start Tue Mar 31 2020 21:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36933 * 120.00081 * 2 1 4 4 H 1.08001 * 119.99984 * 321.04287 * 3 2 1 5 5 C 1.38812 * 120.00336 * 141.04472 * 3 2 1 6 6 N 1.31622 * 119.99989 * 158.42407 * 5 3 2 7 7 Si 1.86798 * 119.99985 * 338.43261 * 5 3 2 8 8 H 1.48498 * 109.47447 * 95.62438 * 7 5 3 9 9 H 1.48499 * 109.47383 * 215.62836 * 7 5 3 10 10 H 1.48504 * 109.46948 * 335.62818 * 7 5 3 11 11 C 1.46499 * 119.99935 * 179.72062 * 2 1 3 12 12 C 1.52994 * 109.47121 * 90.00059 * 11 2 1 13 13 O 1.42907 * 109.47323 * 65.00298 * 12 11 2 14 14 C 1.42896 * 114.00318 * 180.02562 * 13 12 11 15 15 C 1.52995 * 109.47169 * 179.97438 * 14 13 12 16 16 N 1.46499 * 109.47060 * 64.99618 * 15 14 13 17 17 C 1.34784 * 119.99902 * 179.97438 * 16 15 14 18 18 O 1.21276 * 119.99933 * 0.02562 * 17 16 15 19 19 C 1.50701 * 119.99899 * 180.02562 * 17 16 15 20 20 H 1.08998 * 109.69038 * 60.54684 * 19 17 16 21 21 C 1.53432 * 109.69109 * 181.13416 * 19 17 16 22 22 C 1.53122 * 109.54606 * 169.43201 * 21 19 17 23 23 C 1.53422 * 109.57223 * 289.92514 * 22 21 19 24 24 C 1.50593 * 108.33510 * 49.81925 * 23 22 21 25 25 N 1.32915 * 129.16257 * 163.38115 * 24 23 22 26 26 N 1.29020 * 108.63639 * 180.22955 * 25 24 23 27 27 N 1.29105 * 110.25719 * 359.97438 * 26 25 24 28 28 H 0.97001 * 126.00430 * 179.97438 * 27 26 25 29 29 C 1.34396 * 107.99153 * 359.92481 * 27 26 25 30 30 H 1.08997 * 109.47371 * 265.90214 * 1 2 3 31 31 H 1.09008 * 109.46907 * 25.90173 * 1 2 3 32 32 H 1.08998 * 109.47043 * 145.90129 * 1 2 3 33 33 H 0.97008 * 119.99670 * 180.02562 * 6 5 3 34 34 H 1.09006 * 109.47065 * 210.00350 * 11 2 1 35 35 H 1.09008 * 109.46980 * 330.00048 * 11 2 1 36 36 H 1.09000 * 109.47443 * 184.99663 * 12 11 2 37 37 H 1.08995 * 109.47294 * 305.00316 * 12 11 2 38 38 H 1.09007 * 109.46878 * 299.99801 * 14 13 12 39 39 H 1.08996 * 109.47008 * 59.99242 * 14 13 12 40 40 H 1.09000 * 109.47367 * 184.99704 * 15 14 13 41 41 H 1.08999 * 109.47295 * 305.00134 * 15 14 13 42 42 H 0.96997 * 120.00377 * 0.02562 * 16 15 14 43 43 H 1.08996 * 109.45671 * 289.45027 * 21 19 17 44 44 H 1.08994 * 109.45728 * 49.40188 * 21 19 17 45 45 H 1.09002 * 109.44948 * 169.89702 * 22 21 19 46 46 H 1.09004 * 109.46086 * 49.95914 * 22 21 19 47 47 H 1.09000 * 109.69292 * 290.10486 * 23 22 21 48 48 H 1.09002 * 109.72083 * 169.54250 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7898 2.0172 -0.5881 5 6 3.3063 1.3196 0.7558 6 7 4.1849 2.2523 0.4549 7 14 3.6160 0.1757 2.1997 8 1 4.4731 -0.9547 1.7608 9 1 4.2999 0.9230 3.2855 10 1 2.3209 -0.3507 2.7008 11 6 2.1975 -1.2687 0.0062 12 6 2.4525 -1.7174 -1.4341 13 8 3.3210 -0.7826 -2.0776 14 6 3.6241 -1.1101 -3.4351 15 6 4.5552 -0.0466 -4.0206 16 7 5.8398 -0.0816 -3.3173 17 6 6.8225 0.7724 -3.6660 18 8 6.6431 1.5701 -4.5617 19 6 8.1443 0.7360 -2.9429 20 1 8.6043 -0.2443 -3.0678 21 6 9.0725 1.8194 -3.5075 22 6 10.3039 1.9585 -2.6082 23 6 9.8953 2.5912 -1.2716 24 6 8.7056 1.8394 -0.7356 25 7 8.2046 1.8285 0.4954 26 7 7.1818 1.0423 0.5173 27 7 6.9851 0.5320 -0.6522 28 1 6.2795 -0.0888 -0.8921 29 6 7.9291 1.0129 -1.4791 30 1 -0.3634 -0.0734 1.0250 31 1 -0.3633 0.9245 -0.4489 32 1 -0.3633 -0.8510 -0.5761 33 1 4.9934 2.3454 0.9828 34 1 3.1499 -1.1359 0.5195 35 1 1.6083 -2.0259 0.5237 36 1 2.9181 -2.7029 -1.4306 37 1 1.5062 -1.7645 -1.9729 38 1 4.1138 -2.0832 -3.4735 39 1 2.7019 -1.1443 -4.0151 40 1 4.7153 -0.2472 -5.0799 41 1 4.1026 0.9379 -3.9016 42 1 5.9835 -0.7199 -2.6012 43 1 9.3870 1.5400 -4.5131 44 1 8.5405 2.7700 -3.5447 45 1 11.0422 2.5924 -3.0993 46 1 10.7345 0.9736 -2.4271 47 1 9.6297 3.6370 -1.4262 48 1 10.7219 2.5229 -0.5643 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485777308.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:32 Heat of formation + Delta-G solvation = 39.497574 kcal Electronic energy + Delta-G solvation = -31567.016361 eV Core-core repulsion = 27467.256642 eV Total energy + Delta-G solvation = -4099.759718 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.15684 -39.83839 -37.84424 -36.73825 -35.65689 -34.54118 -33.52890 -31.50426 -30.76280 -29.90394 -29.70297 -28.15510 -26.01601 -24.74571 -23.08476 -22.89553 -22.65604 -21.89647 -20.87620 -20.63813 -19.45161 -18.05950 -17.12700 -16.69104 -16.52963 -16.33807 -15.91359 -15.29653 -15.17767 -14.93952 -14.48951 -14.04848 -13.93697 -13.74284 -13.68970 -13.60812 -13.40456 -12.89912 -12.79539 -12.45688 -12.17231 -11.94654 -11.77934 -11.52664 -11.40090 -11.24136 -11.13791 -11.04670 -11.01650 -10.93624 -10.64502 -10.52260 -10.33054 -10.07219 -9.81452 -9.79415 -9.49937 -9.12936 -9.05363 -8.60405 -8.36355 -6.71326 -5.79180 -3.24290 1.83344 2.58941 2.88819 3.01368 3.16473 3.35745 3.57392 3.64346 4.05303 4.37574 4.42549 4.62996 4.65686 4.73798 4.90996 5.03296 5.06068 5.13535 5.20735 5.24019 5.33539 5.47345 5.49658 5.54012 5.64685 5.71017 5.75606 5.83034 5.85377 5.89146 5.99234 6.02096 6.10553 6.13714 6.19110 6.25322 6.25919 6.40417 6.45076 6.50089 6.71151 6.73099 7.13755 7.39990 7.69801 8.15988 8.21963 8.53805 8.85134 9.09952 9.86894 10.24114 11.36114 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012700 B = 0.004955 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.202477 B = 5649.758896 C = 7176.897585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.125 3.875 2 N -0.605 5.605 3 C -0.263 4.263 4 H 0.072 0.928 5 C 0.050 3.950 6 N -0.888 5.888 7 Si 0.870 3.130 8 H -0.291 1.291 9 H -0.300 1.300 10 H -0.279 1.279 11 C 0.135 3.865 12 C 0.048 3.952 13 O -0.345 6.345 14 C 0.043 3.957 15 C 0.126 3.874 16 N -0.721 5.721 17 C 0.519 3.481 18 O -0.527 6.527 19 C -0.027 4.027 20 H 0.113 0.887 21 C -0.096 4.096 22 C -0.117 4.117 23 C -0.033 4.033 24 C -0.008 4.008 25 N -0.267 5.267 26 N -0.048 5.048 27 N -0.360 5.360 28 H 0.445 0.555 29 C -0.029 4.029 30 H 0.005 0.995 31 H 0.044 0.956 32 H 0.022 0.978 33 H 0.269 0.731 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.029 0.971 37 H 0.040 0.960 38 H 0.043 0.957 39 H 0.060 0.940 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.392 0.608 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.079 0.921 46 H 0.067 0.933 47 H 0.084 0.916 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.209 -9.064 -10.115 16.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.329 5.329 3 C -0.391 4.391 4 H 0.090 0.910 5 C -0.151 4.151 6 N -0.529 5.529 7 Si 0.702 3.298 8 H -0.219 1.219 9 H -0.228 1.228 10 H -0.205 1.205 11 C 0.009 3.991 12 C -0.032 4.032 13 O -0.263 6.263 14 C -0.035 4.035 15 C 0.003 3.997 16 N -0.373 5.373 17 C 0.304 3.696 18 O -0.402 6.402 19 C -0.050 4.050 20 H 0.130 0.870 21 C -0.134 4.134 22 C -0.155 4.155 23 C -0.073 4.073 24 C -0.148 4.148 25 N -0.132 5.132 26 N -0.027 5.027 27 N -0.080 5.080 28 H 0.292 0.708 29 C -0.165 4.165 30 H 0.023 0.977 31 H 0.063 0.937 32 H 0.041 0.959 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.047 0.953 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.078 0.922 40 H 0.096 0.904 41 H 0.103 0.897 42 H 0.226 0.774 43 H 0.099 0.901 44 H 0.102 0.898 45 H 0.097 0.903 46 H 0.086 0.914 47 H 0.102 0.898 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 8.837 -8.035 -9.088 15.009 hybrid contribution -0.280 -1.795 -0.064 1.818 sum 8.558 -9.830 -9.152 15.926 Atomic orbital electron populations 1.21074 0.84904 0.98837 0.97215 1.43939 1.00446 1.01904 1.86591 1.18573 1.06993 0.90425 1.23154 0.90997 1.25324 0.96801 0.95974 0.97039 1.69785 1.09285 1.34561 1.39268 0.87069 0.76947 0.80365 0.85447 1.21904 1.22816 1.20483 1.21282 0.97054 0.88790 0.92010 1.23337 0.92240 0.90312 0.97295 1.88307 1.67034 1.48904 1.22064 1.22687 0.97862 0.96279 0.86695 1.21406 0.82061 1.01185 0.95055 1.45961 1.14455 1.38246 1.38660 1.20363 0.85236 0.80363 0.83607 1.90703 1.81537 1.37032 1.30947 1.19952 0.94786 1.02977 0.87299 0.86961 1.21453 0.94709 0.98539 0.98735 1.21654 0.97341 1.01607 0.94876 1.19961 0.92907 0.98489 0.95900 1.21586 1.01076 1.01453 0.90678 1.74869 1.04506 1.14360 1.19466 1.78682 1.12386 1.08579 1.03076 1.44772 1.22569 1.32930 1.07687 0.70810 1.21255 0.95550 1.04953 0.94748 0.97702 0.93675 0.95897 0.92019 0.92211 0.92919 0.95292 0.94212 0.93884 0.92206 0.90373 0.89715 0.77428 0.90097 0.89839 0.90269 0.91412 0.89783 0.89841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.50 10.70 59.85 0.64 3.14 16 2 N -0.60 -14.27 2.44 -181.12 -0.44 -14.71 16 3 C -0.26 -7.31 9.41 -15.06 -0.14 -7.46 16 4 H 0.07 2.22 8.06 -52.49 -0.42 1.80 16 5 C 0.05 1.44 5.31 -17.43 -0.09 1.34 16 6 N -0.89 -26.76 13.97 55.49 0.78 -25.98 16 7 Si 0.87 22.81 25.03 -169.99 -4.26 18.55 16 8 H -0.29 -7.21 6.69 56.52 0.38 -6.83 16 9 H -0.30 -8.30 7.11 56.52 0.40 -7.90 16 10 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 11 C 0.14 2.79 4.93 -4.05 -0.02 2.77 16 12 C 0.05 0.82 6.28 37.15 0.23 1.05 16 13 O -0.34 -6.39 9.78 -35.23 -0.34 -6.73 16 14 C 0.04 0.58 6.07 37.15 0.23 0.80 16 15 C 0.13 1.80 6.06 -4.04 -0.02 1.77 16 16 N -0.72 -10.15 5.07 -60.30 -0.31 -10.45 16 17 C 0.52 7.80 7.15 -10.98 -0.08 7.73 16 18 O -0.53 -9.50 15.84 5.56 0.09 -9.41 16 19 C -0.03 -0.33 2.91 -92.78 -0.27 -0.60 16 20 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 21 C -0.10 -1.05 4.66 -26.44 -0.12 -1.17 16 22 C -0.12 -1.04 5.90 -26.45 -0.16 -1.20 16 23 C -0.03 -0.39 6.30 -27.72 -0.17 -0.57 16 24 C -0.01 -0.13 7.11 -83.12 -0.59 -0.72 16 25 N -0.27 -5.41 12.40 33.16 0.41 -5.00 16 26 N -0.05 -1.03 12.72 60.35 0.77 -0.26 16 27 N -0.36 -6.57 6.76 33.39 0.23 -6.35 16 28 H 0.45 7.80 6.82 -190.07 -1.30 6.50 16 29 C -0.03 -0.46 6.38 -82.50 -0.53 -0.99 16 30 H 0.00 0.10 8.14 -51.93 -0.42 -0.33 16 31 H 0.04 0.90 8.01 -51.92 -0.42 0.48 16 32 H 0.02 0.38 8.10 -51.93 -0.42 -0.04 16 33 H 0.27 8.06 7.63 -40.82 -0.31 7.75 16 34 H 0.06 1.38 3.38 -51.93 -0.18 1.20 16 35 H 0.05 0.96 8.07 -51.92 -0.42 0.54 16 36 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.04 0.47 8.14 -51.92 -0.42 0.05 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 42 H 0.39 4.98 6.51 -40.82 -0.27 4.72 16 43 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.08 1.11 7.75 -51.93 -0.40 0.71 16 45 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.07 0.54 8.12 -51.93 -0.42 0.11 16 47 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 384.21 15.07 5.79 5.79 Total: -1.00 -35.72 384.21 -6.83 -42.55 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -8.44 Total: 6.08 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: -1.10 Total: 5.92 kcal Atomic # 7 Polarization: -64.19 SS G_CDS: 1.43 Total: -62.76 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -0.26 Total: -16.14 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.26 Total: 18.55 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.72 -6.83 -42.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485777308.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.050 kcal (2) G-P(sol) polarization free energy of solvation -35.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds