Wall clock time and date at job start Tue Mar 31 2020 21:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36933 * 120.00081 * 2 1 4 4 H 1.08001 * 119.99984 * 321.04287 * 3 2 1 5 5 C 1.38812 * 120.00336 * 141.04472 * 3 2 1 6 6 N 1.31622 * 119.99989 * 158.42407 * 5 3 2 7 7 Si 1.86798 * 119.99985 * 338.43261 * 5 3 2 8 8 H 1.48498 * 109.47447 * 95.62438 * 7 5 3 9 9 H 1.48499 * 109.47383 * 215.62836 * 7 5 3 10 10 H 1.48504 * 109.46948 * 335.62818 * 7 5 3 11 11 C 1.46499 * 119.99935 * 179.72062 * 2 1 3 12 12 C 1.52994 * 109.47121 * 90.00059 * 11 2 1 13 13 O 1.42907 * 109.47323 * 65.00298 * 12 11 2 14 14 C 1.42896 * 114.00318 * 180.02562 * 13 12 11 15 15 C 1.52995 * 109.47169 * 179.97438 * 14 13 12 16 16 N 1.46499 * 109.47060 * 64.99618 * 15 14 13 17 17 C 1.34784 * 119.99902 * 179.97438 * 16 15 14 18 18 O 1.21276 * 119.99933 * 0.02562 * 17 16 15 19 19 C 1.50701 * 119.99899 * 180.02562 * 17 16 15 20 20 H 1.08998 * 109.69038 * 60.54684 * 19 17 16 21 21 C 1.53432 * 109.69109 * 181.13416 * 19 17 16 22 22 C 1.53122 * 109.54606 * 169.43201 * 21 19 17 23 23 C 1.53422 * 109.57223 * 289.92514 * 22 21 19 24 24 C 1.50593 * 108.33510 * 49.81925 * 23 22 21 25 25 N 1.32915 * 129.16257 * 163.38115 * 24 23 22 26 26 N 1.29020 * 108.63639 * 180.22955 * 25 24 23 27 27 N 1.29105 * 110.25719 * 359.97438 * 26 25 24 28 28 H 0.97001 * 126.00430 * 179.97438 * 27 26 25 29 29 C 1.34396 * 107.99153 * 359.92481 * 27 26 25 30 30 H 1.08997 * 109.47371 * 265.90214 * 1 2 3 31 31 H 1.09008 * 109.46907 * 25.90173 * 1 2 3 32 32 H 1.08998 * 109.47043 * 145.90129 * 1 2 3 33 33 H 0.97008 * 119.99670 * 180.02562 * 6 5 3 34 34 H 1.09006 * 109.47065 * 210.00350 * 11 2 1 35 35 H 1.09008 * 109.46980 * 330.00048 * 11 2 1 36 36 H 1.09000 * 109.47443 * 184.99663 * 12 11 2 37 37 H 1.08995 * 109.47294 * 305.00316 * 12 11 2 38 38 H 1.09007 * 109.46878 * 299.99801 * 14 13 12 39 39 H 1.08996 * 109.47008 * 59.99242 * 14 13 12 40 40 H 1.09000 * 109.47367 * 184.99704 * 15 14 13 41 41 H 1.08999 * 109.47295 * 305.00134 * 15 14 13 42 42 H 0.96997 * 120.00377 * 0.02562 * 16 15 14 43 43 H 1.08996 * 109.45671 * 289.45027 * 21 19 17 44 44 H 1.08994 * 109.45728 * 49.40188 * 21 19 17 45 45 H 1.09002 * 109.44948 * 169.89702 * 22 21 19 46 46 H 1.09004 * 109.46086 * 49.95914 * 22 21 19 47 47 H 1.09000 * 109.69292 * 290.10486 * 23 22 21 48 48 H 1.09002 * 109.72083 * 169.54250 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7898 2.0172 -0.5881 5 6 3.3063 1.3196 0.7558 6 7 4.1849 2.2523 0.4549 7 14 3.6160 0.1757 2.1997 8 1 4.4731 -0.9547 1.7608 9 1 4.2999 0.9230 3.2855 10 1 2.3209 -0.3507 2.7008 11 6 2.1975 -1.2687 0.0062 12 6 2.4525 -1.7174 -1.4341 13 8 3.3210 -0.7826 -2.0776 14 6 3.6241 -1.1101 -3.4351 15 6 4.5552 -0.0466 -4.0206 16 7 5.8398 -0.0816 -3.3173 17 6 6.8225 0.7724 -3.6660 18 8 6.6431 1.5701 -4.5617 19 6 8.1443 0.7360 -2.9429 20 1 8.6043 -0.2443 -3.0678 21 6 9.0725 1.8194 -3.5075 22 6 10.3039 1.9585 -2.6082 23 6 9.8953 2.5912 -1.2716 24 6 8.7056 1.8394 -0.7356 25 7 8.2046 1.8285 0.4954 26 7 7.1818 1.0423 0.5173 27 7 6.9851 0.5320 -0.6522 28 1 6.2795 -0.0888 -0.8921 29 6 7.9291 1.0129 -1.4791 30 1 -0.3634 -0.0734 1.0250 31 1 -0.3633 0.9245 -0.4489 32 1 -0.3633 -0.8510 -0.5761 33 1 4.9934 2.3454 0.9828 34 1 3.1499 -1.1359 0.5195 35 1 1.6083 -2.0259 0.5237 36 1 2.9181 -2.7029 -1.4306 37 1 1.5062 -1.7645 -1.9729 38 1 4.1138 -2.0832 -3.4735 39 1 2.7019 -1.1443 -4.0151 40 1 4.7153 -0.2472 -5.0799 41 1 4.1026 0.9379 -3.9016 42 1 5.9835 -0.7199 -2.6012 43 1 9.3870 1.5400 -4.5131 44 1 8.5405 2.7700 -3.5447 45 1 11.0422 2.5924 -3.0993 46 1 10.7345 0.9736 -2.4271 47 1 9.6297 3.6370 -1.4262 48 1 10.7219 2.5229 -0.5643 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485777308.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:31 Heat of formation + Delta-G solvation = 11.202600 kcal Electronic energy + Delta-G solvation = -31568.243323 eV Core-core repulsion = 27467.256642 eV Total energy + Delta-G solvation = -4100.986680 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.49919 -41.03228 -39.16711 -37.79995 -37.27802 -35.86096 -34.84182 -33.60344 -31.92369 -31.08212 -30.99258 -29.48739 -27.91662 -25.80798 -24.60414 -24.36252 -23.70818 -23.08056 -22.45194 -22.05560 -20.50158 -19.31438 -18.71282 -18.19892 -17.88384 -17.57591 -17.29611 -16.87293 -16.52266 -16.30910 -15.58267 -15.52812 -15.35382 -15.00917 -14.90383 -14.77968 -14.60521 -14.57576 -14.34781 -13.78178 -13.73123 -13.27719 -13.17275 -12.92665 -12.74552 -12.54190 -12.45166 -12.35173 -12.34362 -12.21503 -12.12114 -11.94843 -11.73032 -11.61560 -11.48023 -11.31615 -11.03120 -10.54070 -10.35013 -10.25012 -9.87773 -8.63788 -8.01250 -5.41480 0.52129 1.25576 1.34999 1.41858 1.53061 1.56125 1.75539 2.04414 2.48979 2.85710 3.19422 3.25561 3.35654 3.54374 3.58822 3.76742 3.94632 3.99509 4.16187 4.20172 4.33356 4.34071 4.35829 4.44657 4.50391 4.52124 4.55865 4.58016 4.67625 4.73569 4.77507 4.89152 4.94042 4.99961 5.03381 5.11488 5.15180 5.16786 5.20392 5.26292 5.36615 5.48082 5.79180 6.07178 6.27278 6.28065 6.52708 7.00455 7.12757 7.45391 7.76350 8.16591 9.16229 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012700 B = 0.004955 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.202477 B = 5649.758896 C = 7176.897585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.621 5.621 3 C -0.244 4.244 4 H 0.026 0.974 5 C 0.011 3.989 6 N -0.926 5.926 7 Si 0.926 3.074 8 H -0.272 1.272 9 H -0.328 1.328 10 H -0.271 1.271 11 C 0.124 3.876 12 C 0.053 3.947 13 O -0.388 6.388 14 C 0.046 3.954 15 C 0.128 3.872 16 N -0.717 5.717 17 C 0.513 3.487 18 O -0.562 6.562 19 C -0.021 4.021 20 H 0.159 0.841 21 C -0.095 4.095 22 C -0.104 4.104 23 C -0.036 4.036 24 C -0.018 4.018 25 N -0.297 5.297 26 N -0.103 5.103 27 N -0.360 5.360 28 H 0.444 0.556 29 C -0.018 4.018 30 H 0.010 0.990 31 H 0.034 0.966 32 H 0.060 0.940 33 H 0.261 0.739 34 H 0.034 0.966 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.051 0.949 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.103 0.897 41 H 0.037 0.963 42 H 0.399 0.601 43 H 0.105 0.895 44 H 0.052 0.948 45 H 0.109 0.891 46 H 0.088 0.912 47 H 0.079 0.921 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.162 -12.306 -11.717 19.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.346 5.346 3 C -0.374 4.374 4 H 0.044 0.956 5 C -0.187 4.187 6 N -0.569 5.569 7 Si 0.758 3.242 8 H -0.199 1.199 9 H -0.259 1.259 10 H -0.196 1.196 11 C -0.001 4.001 12 C -0.026 4.026 13 O -0.307 6.307 14 C -0.031 4.031 15 C 0.004 3.996 16 N -0.369 5.369 17 C 0.299 3.701 18 O -0.440 6.440 19 C -0.044 4.044 20 H 0.176 0.824 21 C -0.134 4.134 22 C -0.142 4.142 23 C -0.075 4.075 24 C -0.159 4.159 25 N -0.162 5.162 26 N -0.082 5.082 27 N -0.080 5.080 28 H 0.291 0.709 29 C -0.155 4.155 30 H 0.028 0.972 31 H 0.053 0.947 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.052 0.948 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.121 0.879 41 H 0.056 0.944 42 H 0.235 0.765 43 H 0.124 0.876 44 H 0.071 0.929 45 H 0.127 0.873 46 H 0.107 0.893 47 H 0.098 0.902 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.748 -11.349 -10.674 18.378 hybrid contribution -0.668 -0.745 0.316 1.049 sum 9.080 -12.094 -10.358 18.330 Atomic orbital electron populations 1.21158 0.82818 1.00029 0.98059 1.44072 1.01889 1.01597 1.87018 1.18274 1.06708 0.91144 1.21312 0.95628 1.25680 0.96820 0.97363 0.98876 1.69905 1.09801 1.36936 1.40275 0.86160 0.76952 0.79143 0.81933 1.19868 1.25876 1.19596 1.21447 0.95939 0.87991 0.94723 1.23173 0.93216 0.91436 0.94781 1.88246 1.67531 1.50445 1.24526 1.22829 0.98509 0.97283 0.84492 1.21395 0.82255 0.99227 0.96697 1.45998 1.14177 1.38136 1.38561 1.20886 0.86192 0.79702 0.83290 1.90687 1.82285 1.38300 1.32761 1.20236 0.93813 1.06036 0.84280 0.82364 1.21516 0.94847 0.96481 1.00514 1.21656 0.96809 1.03162 0.92578 1.20225 0.91533 0.97924 0.97855 1.22427 1.02359 1.01528 0.89614 1.74789 1.04858 1.14785 1.21777 1.78621 1.13915 1.10780 1.04840 1.44779 1.22863 1.32758 1.07603 0.70879 1.21856 0.94080 1.03588 0.95964 0.97179 0.94745 0.92093 0.92905 0.94767 0.89920 0.91362 0.93044 0.90180 0.90873 0.87875 0.94410 0.76529 0.87631 0.92898 0.87280 0.89301 0.90212 0.88295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.73 10.70 127.77 1.37 6.10 16 2 N -0.62 -28.69 2.44 -726.93 -1.77 -30.46 16 3 C -0.24 -13.94 9.41 84.03 0.79 -13.15 16 4 H 0.03 1.69 8.06 -2.91 -0.02 1.67 16 5 C 0.01 0.65 5.31 84.86 0.45 1.10 16 6 N -0.93 -58.49 13.97 21.65 0.30 -58.18 16 7 Si 0.93 48.37 25.03 68.60 1.72 50.09 16 8 H -0.27 -13.12 6.69 99.48 0.67 -12.46 16 9 H -0.33 -18.54 7.11 99.48 0.71 -17.84 16 10 H -0.27 -13.55 7.11 99.48 0.71 -12.85 16 11 C 0.12 4.81 4.93 86.38 0.43 5.24 16 12 C 0.05 1.62 6.28 71.98 0.45 2.07 16 13 O -0.39 -13.80 9.78 -148.98 -1.46 -15.26 16 14 C 0.05 1.13 6.07 71.98 0.44 1.57 16 15 C 0.13 3.56 6.06 86.38 0.52 4.09 16 16 N -0.72 -19.54 5.07 -463.07 -2.35 -21.89 16 17 C 0.51 15.02 7.15 87.66 0.63 15.65 16 18 O -0.56 -20.31 15.84 -3.02 -0.05 -20.36 16 19 C -0.02 -0.46 2.91 -12.19 -0.04 -0.50 16 20 H 0.16 2.16 8.14 -2.39 -0.02 2.14 16 21 C -0.10 -1.85 4.66 30.78 0.14 -1.70 16 22 C -0.10 -1.50 5.90 30.78 0.18 -1.32 16 23 C -0.04 -0.80 6.30 29.96 0.19 -0.62 16 24 C -0.02 -0.59 7.11 41.75 0.30 -0.30 16 25 N -0.30 -12.50 12.40 -48.99 -0.61 -13.11 16 26 N -0.10 -4.63 12.72 37.02 0.47 -4.16 16 27 N -0.36 -13.43 6.76 -48.27 -0.33 -13.76 16 28 H 0.44 15.85 6.82 -219.68 -1.50 14.35 16 29 C -0.02 -0.56 6.38 41.50 0.26 -0.30 16 30 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.03 1.35 8.01 -2.38 -0.02 1.34 16 32 H 0.06 1.86 8.10 -2.39 -0.02 1.84 16 33 H 0.26 16.50 7.63 -92.70 -0.71 15.80 16 34 H 0.03 1.51 3.38 -2.38 -0.01 1.50 16 35 H 0.08 2.68 8.07 -2.38 -0.02 2.66 16 36 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.05 1.46 8.14 -2.39 -0.02 1.45 16 38 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 39 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.10 2.34 8.14 -2.39 -0.02 2.33 16 41 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.40 9.62 6.51 -92.71 -0.60 9.02 16 43 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.05 1.37 7.75 -2.39 -0.02 1.35 16 45 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.09 0.98 8.12 -2.38 -0.02 0.96 16 47 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 48 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -84.34 384.21 0.96 -83.39 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: -1.09 Total: 25.77 kcal Atomic # 6 Polarization: 11.82 SS G_CDS: 6.11 Total: 17.93 kcal Atomic # 7 Polarization: -137.28 SS G_CDS: -4.28 Total: -141.56 kcal Atomic # 8 Polarization: -34.12 SS G_CDS: -1.50 Total: -35.62 kcal Atomic # 14 Polarization: 48.37 SS G_CDS: 1.72 Total: 50.09 kcal Total: -84.34 0.96 -83.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485777308.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.592 kcal (2) G-P(sol) polarization free energy of solvation -84.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds