Wall clock time and date at job start Tue Mar 31 2020 20:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47840 * 111.00157 * 2 1 4 4 C 1.54901 * 104.79868 * 146.36315 * 3 2 1 5 5 C 1.55143 * 101.65105 * 322.92696 * 4 3 2 6 6 C 1.47447 * 110.99635 * 120.84300 * 2 1 3 7 7 H 1.08992 * 109.88575 * 117.17837 * 6 2 1 8 8 C 1.50701 * 109.89017 * 356.14654 * 6 2 1 9 9 C 1.35361 * 126.38623 * 117.27566 * 8 6 2 10 10 C 1.41500 * 105.50565 * 180.02562 * 9 8 6 11 11 C 1.47708 * 126.52201 * 180.02562 * 10 9 8 12 12 O 1.21576 * 119.99389 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00342 * 179.97438 * 11 10 9 14 14 C 1.46498 * 120.00008 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.47054 * 180.02562 * 14 13 11 16 16 H 1.08995 * 109.46622 * 295.00131 * 15 14 13 17 17 C 1.52993 * 109.47050 * 174.99997 * 15 14 13 18 18 O 1.42899 * 109.47291 * 305.00123 * 17 15 14 19 19 N 1.46500 * 109.46838 * 55.00342 * 15 14 13 20 20 C 1.36943 * 119.99438 * 205.00434 * 19 15 14 21 21 H 1.07992 * 120.00030 * 359.97438 * 20 19 15 22 22 C 1.38807 * 119.99651 * 180.02562 * 20 19 15 23 23 N 1.31627 * 120.00479 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00123 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47138 * 89.99484 * 24 22 20 26 26 H 1.48497 * 109.47381 * 210.00084 * 24 22 20 27 27 H 1.48504 * 109.46947 * 330.00042 * 24 22 20 28 28 N 1.31815 * 106.96257 * 0.02562 * 10 9 8 29 29 N 1.28472 * 110.07322 * 359.97438 * 28 10 9 30 30 H 0.97000 * 124.88318 * 179.73107 * 29 28 10 31 31 H 1.09004 * 109.47426 * 306.03076 * 1 2 3 32 32 H 1.08998 * 109.47436 * 66.02457 * 1 2 3 33 33 H 1.08999 * 109.47570 * 186.02428 * 1 2 3 34 34 H 1.09001 * 110.37665 * 265.19423 * 3 2 1 35 35 H 1.09008 * 110.37507 * 27.41788 * 3 2 1 36 36 H 1.09001 * 110.99621 * 81.02122 * 4 3 2 37 37 H 1.09002 * 110.98966 * 204.80302 * 4 3 2 38 38 H 1.08997 * 110.71094 * 277.27099 * 5 4 3 39 39 H 1.09003 * 110.70408 * 154.03485 * 5 4 3 40 40 H 1.07997 * 127.24471 * 0.02562 * 9 8 6 41 41 H 0.96996 * 119.99727 * 0.02562 * 13 11 10 42 42 H 1.09004 * 109.47374 * 300.00439 * 14 13 11 43 43 H 1.08997 * 109.47109 * 60.00300 * 14 13 11 44 44 H 1.09002 * 109.47367 * 64.99958 * 17 15 14 45 45 H 1.09000 * 109.47521 * 185.00119 * 17 15 14 46 46 H 0.96700 * 114.00324 * 180.02562 * 18 17 15 47 47 H 0.96998 * 120.00518 * 24.99832 * 19 15 14 48 48 H 0.96997 * 119.99868 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3802 0.0000 4 6 3.3047 1.3027 0.8296 5 6 2.9157 0.2822 1.9315 6 6 1.9973 -0.7057 1.1819 7 1 2.5672 -1.5800 0.8676 8 6 0.8610 -1.1291 2.0767 9 6 0.5212 -2.3998 2.3964 10 6 -0.5990 -2.2876 3.2536 11 6 -1.3431 -3.4003 3.8780 12 8 -1.0044 -4.5495 3.6713 13 7 -2.3966 -3.1417 4.6777 14 6 -3.1342 -4.2453 5.2974 15 6 -4.2742 -3.6824 6.1487 16 1 -3.8595 -3.1106 6.9788 17 6 -5.1196 -4.8346 6.6949 18 8 -5.5673 -5.6522 5.6118 19 7 -5.1134 -2.8089 5.3248 20 6 -5.8509 -1.8155 5.9119 21 1 -5.8142 -1.6765 6.9822 22 6 -6.6465 -0.9881 5.1314 23 7 -6.6917 -1.1579 3.8269 24 14 -7.6531 0.3664 5.9322 25 1 -6.8475 1.6124 5.9919 26 1 -8.8813 0.6087 5.1334 27 1 -8.0308 -0.0452 7.3082 28 7 -0.8523 -1.0011 3.3889 29 7 -0.0087 -0.3116 2.7081 30 1 -0.0005 0.6568 2.6523 31 1 -0.3634 0.6045 0.8311 32 1 -0.3634 0.4176 -0.9390 33 1 -0.3634 -1.0219 0.1078 34 1 2.2148 1.7038 -1.0182 35 1 1.2880 2.0596 0.4706 36 1 4.1302 0.9281 0.2243 37 1 3.5498 2.2722 1.2634 38 1 2.3743 0.7747 2.7392 39 1 3.7999 -0.2279 2.3138 40 1 1.0037 -3.3080 2.0667 41 1 -2.6665 -2.2247 4.8429 42 1 -3.5454 -4.8893 4.5200 43 1 -2.4599 -4.8235 5.9291 44 1 -4.5184 -5.4343 7.3783 45 1 -5.9817 -4.4323 7.2270 46 1 -6.1108 -6.4039 5.8849 47 1 -5.1466 -2.9339 4.3635 48 1 -7.2480 -0.5799 3.2816 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485996334.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:27 Heat of formation + Delta-G solvation = 19.731979 kcal Electronic energy + Delta-G solvation = -29583.936100 eV Core-core repulsion = 25483.319281 eV Total energy + Delta-G solvation = -4100.616819 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 2.92 seconds Orbital eigenvalues (eV) -42.95085 -39.42218 -38.84761 -37.02172 -34.82653 -33.43137 -32.61235 -31.99756 -31.90560 -31.13033 -28.41392 -27.99101 -26.06124 -25.59629 -23.74353 -23.10054 -22.04578 -21.65667 -20.92563 -20.03782 -19.41035 -17.65195 -17.55265 -16.75302 -16.58925 -16.51984 -15.78888 -15.68912 -15.42171 -14.79617 -14.45736 -14.35160 -14.09656 -13.94925 -13.72001 -13.55521 -13.32001 -13.29476 -12.98150 -12.89318 -12.73835 -11.96909 -11.93212 -11.83956 -11.70291 -11.52712 -11.37352 -11.25773 -10.86745 -10.81647 -10.79931 -10.52495 -10.07580 -9.81188 -9.70971 -9.35276 -9.32256 -9.24859 -8.94349 -8.65441 -8.48192 -6.99056 -5.77038 -3.07155 1.68011 2.04744 2.73888 3.40550 3.45833 3.47835 3.59534 3.62971 3.76307 4.09394 4.20703 4.27682 4.55246 4.58431 4.66122 4.92959 4.94446 4.97084 5.09268 5.15811 5.19368 5.36428 5.42684 5.44119 5.49305 5.57030 5.57924 5.59923 5.62760 5.71032 5.74741 5.88139 5.94277 6.07227 6.10518 6.34618 6.43045 6.50280 6.55600 6.56907 6.79538 6.86881 6.98659 7.65848 7.77713 8.12666 8.25067 8.39549 8.64986 9.51824 10.07719 10.44216 11.44468 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011854 B = 0.002913 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.453789 B = 9608.208088 C =11322.949949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.522 5.522 3 C 0.034 3.966 4 C -0.129 4.129 5 C -0.138 4.138 6 C 0.142 3.858 7 H 0.115 0.885 8 C -0.005 4.005 9 C -0.164 4.164 10 C -0.004 4.004 11 C 0.598 3.402 12 O -0.547 6.547 13 N -0.697 5.697 14 C 0.118 3.882 15 C 0.165 3.835 16 H 0.066 0.934 17 C 0.060 3.940 18 O -0.560 6.560 19 N -0.712 5.712 20 C -0.246 4.246 21 H 0.070 0.930 22 C -0.008 4.008 23 N -0.925 5.925 24 Si 0.905 3.095 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.283 1.283 28 N -0.241 5.241 29 N -0.380 5.380 30 H 0.440 0.560 31 H 0.025 0.975 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.046 0.954 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.085 0.915 40 H 0.162 0.838 41 H 0.416 0.584 42 H 0.078 0.922 43 H 0.063 0.937 44 H 0.027 0.973 45 H 0.048 0.952 46 H 0.363 0.637 47 H 0.389 0.611 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.744 2.867 -3.728 20.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.246 5.246 3 C -0.093 4.093 4 C -0.167 4.167 5 C -0.177 4.177 6 C 0.033 3.967 7 H 0.133 0.867 8 C -0.131 4.131 9 C -0.192 4.192 10 C -0.166 4.166 11 C 0.381 3.619 12 O -0.423 6.423 13 N -0.349 5.349 14 C -0.006 4.006 15 C 0.054 3.946 16 H 0.083 0.917 17 C -0.022 4.022 18 O -0.363 6.363 19 N -0.354 5.354 20 C -0.377 4.377 21 H 0.088 0.912 22 C -0.205 4.205 23 N -0.572 5.572 24 Si 0.736 3.264 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.208 1.208 28 N -0.076 5.076 29 N -0.096 5.096 30 H 0.285 0.715 31 H 0.043 0.957 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.065 0.935 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.104 0.896 40 H 0.180 0.820 41 H 0.253 0.747 42 H 0.096 0.904 43 H 0.081 0.919 44 H 0.045 0.955 45 H 0.067 0.933 46 H 0.208 0.792 47 H 0.224 0.776 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 19.619 3.060 -4.036 20.262 hybrid contribution -1.093 1.194 0.899 1.852 sum 18.526 4.254 -3.137 19.266 Atomic orbital electron populations 1.22749 0.86820 1.02779 1.00938 1.63872 1.08660 1.14267 1.37792 1.23197 0.95645 0.89336 1.01164 1.22728 0.97843 0.99402 0.96758 1.22902 1.00079 0.96850 0.97904 1.21200 0.90650 0.98539 0.86356 0.86747 1.21570 0.97953 0.91117 1.02477 1.21505 0.98728 0.96814 1.02195 1.22044 0.99692 0.90741 1.04107 1.16862 0.80014 0.86384 0.78620 1.90757 1.68465 1.20530 1.62577 1.45864 1.29646 1.12028 1.47320 1.21599 0.92720 0.88817 0.97497 1.20591 0.89628 0.90284 0.94084 0.91670 1.23030 0.97927 0.92536 0.88658 1.86576 1.72380 1.42670 1.34669 1.42364 1.51571 1.34922 1.06540 1.19201 1.19495 1.06923 0.92065 0.91241 1.24737 1.00499 0.99791 0.95440 1.69689 1.43273 1.40834 1.03391 0.86234 0.79743 0.82236 0.78153 1.21795 1.21848 1.20847 1.73740 1.14098 1.04967 1.14838 1.43558 1.21585 1.09728 1.34695 0.71494 0.95672 0.90908 0.90340 0.89622 0.93527 0.90081 0.90455 0.91513 0.89627 0.81993 0.74717 0.90379 0.91924 0.95501 0.93326 0.79196 0.77628 0.93533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 8.30 60.06 0.50 0.65 16 2 N -0.52 -4.57 5.44 -232.95 -1.27 -5.84 16 3 C 0.03 0.23 6.73 -2.30 -0.02 0.21 16 4 C -0.13 -0.70 7.08 -24.59 -0.17 -0.87 16 5 C -0.14 -0.89 6.46 -24.90 -0.16 -1.05 16 6 C 0.14 1.19 3.90 -67.87 -0.26 0.93 16 7 H 0.11 0.92 8.12 -51.93 -0.42 0.49 16 8 C -0.01 -0.06 3.67 -82.21 -0.30 -0.36 16 9 C -0.16 -2.24 10.72 -39.37 -0.42 -2.66 16 10 C 0.00 -0.07 7.13 -82.76 -0.59 -0.66 16 11 C 0.60 11.37 7.82 -12.39 -0.10 11.27 16 12 O -0.55 -11.48 16.93 5.30 0.09 -11.39 16 13 N -0.70 -13.24 5.38 -61.29 -0.33 -13.57 16 14 C 0.12 2.21 5.12 -4.04 -0.02 2.19 16 15 C 0.17 3.25 2.84 -67.93 -0.19 3.06 16 16 H 0.07 1.23 8.08 -51.93 -0.42 0.81 16 17 C 0.06 1.06 6.85 37.15 0.25 1.32 16 18 O -0.56 -10.20 12.64 -35.23 -0.45 -10.64 16 19 N -0.71 -17.49 4.51 -53.43 -0.24 -17.73 16 20 C -0.25 -6.60 9.93 -15.06 -0.15 -6.75 16 21 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 22 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 23 N -0.92 -27.76 13.06 55.49 0.72 -27.04 16 24 Si 0.91 22.06 29.55 -169.99 -5.02 17.03 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 27 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 28 N -0.24 -3.76 11.92 33.42 0.40 -3.36 16 29 N -0.38 -4.45 5.13 33.50 0.17 -4.28 16 30 H 0.44 4.03 7.85 -190.44 -1.50 2.53 16 31 H 0.02 0.24 5.40 -51.93 -0.28 -0.04 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.95 7.14 -51.93 -0.37 0.57 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.05 0.30 7.68 -51.92 -0.40 -0.10 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.45 7.58 -51.93 -0.39 0.06 16 39 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.16 2.04 8.06 -52.49 -0.42 1.61 16 41 H 0.42 8.23 7.86 -40.82 -0.32 7.91 16 42 H 0.08 1.62 7.39 -51.93 -0.38 1.24 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.36 4.77 9.12 45.56 0.42 5.19 16 47 H 0.39 10.65 7.80 -40.82 -0.32 10.34 16 48 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 391.30 15.07 5.90 5.90 Total: -1.00 -33.70 391.30 -9.50 -43.20 By element: Atomic # 1 Polarization: 28.52 SS G_CDS: -7.74 Total: 20.78 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: -1.73 Total: 6.95 kcal Atomic # 7 Polarization: -71.27 SS G_CDS: -0.54 Total: -71.82 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.36 Total: -22.04 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.70 -9.50 -43.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485996334.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.929 kcal (2) G-P(sol) polarization free energy of solvation -33.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.92 seconds