Wall clock time and date at job start Tue Mar 31 2020 20:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47840 * 111.00157 * 2 1 4 4 C 1.54901 * 104.79868 * 146.36315 * 3 2 1 5 5 C 1.55143 * 101.65105 * 322.92696 * 4 3 2 6 6 C 1.47447 * 110.99635 * 120.84300 * 2 1 3 7 7 H 1.08992 * 109.88575 * 117.17837 * 6 2 1 8 8 C 1.50701 * 109.89017 * 356.14654 * 6 2 1 9 9 C 1.35361 * 126.38623 * 117.27566 * 8 6 2 10 10 C 1.41500 * 105.50565 * 180.02562 * 9 8 6 11 11 C 1.47708 * 126.52201 * 180.02562 * 10 9 8 12 12 O 1.21576 * 119.99389 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00342 * 179.97438 * 11 10 9 14 14 C 1.46498 * 120.00008 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.47054 * 180.02562 * 14 13 11 16 16 H 1.08995 * 109.46622 * 295.00131 * 15 14 13 17 17 C 1.52993 * 109.47050 * 174.99997 * 15 14 13 18 18 O 1.42899 * 109.47291 * 305.00123 * 17 15 14 19 19 N 1.46500 * 109.46838 * 55.00342 * 15 14 13 20 20 C 1.36943 * 119.99438 * 205.00434 * 19 15 14 21 21 H 1.07992 * 120.00030 * 359.97438 * 20 19 15 22 22 C 1.38807 * 119.99651 * 180.02562 * 20 19 15 23 23 N 1.31627 * 120.00479 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00123 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47138 * 89.99484 * 24 22 20 26 26 H 1.48497 * 109.47381 * 210.00084 * 24 22 20 27 27 H 1.48504 * 109.46947 * 330.00042 * 24 22 20 28 28 N 1.31815 * 106.96257 * 0.02562 * 10 9 8 29 29 N 1.28472 * 110.07322 * 359.97438 * 28 10 9 30 30 H 0.97000 * 124.88318 * 179.73107 * 29 28 10 31 31 H 1.09004 * 109.47426 * 306.03076 * 1 2 3 32 32 H 1.08998 * 109.47436 * 66.02457 * 1 2 3 33 33 H 1.08999 * 109.47570 * 186.02428 * 1 2 3 34 34 H 1.09001 * 110.37665 * 265.19423 * 3 2 1 35 35 H 1.09008 * 110.37507 * 27.41788 * 3 2 1 36 36 H 1.09001 * 110.99621 * 81.02122 * 4 3 2 37 37 H 1.09002 * 110.98966 * 204.80302 * 4 3 2 38 38 H 1.08997 * 110.71094 * 277.27099 * 5 4 3 39 39 H 1.09003 * 110.70408 * 154.03485 * 5 4 3 40 40 H 1.07997 * 127.24471 * 0.02562 * 9 8 6 41 41 H 0.96996 * 119.99727 * 0.02562 * 13 11 10 42 42 H 1.09004 * 109.47374 * 300.00439 * 14 13 11 43 43 H 1.08997 * 109.47109 * 60.00300 * 14 13 11 44 44 H 1.09002 * 109.47367 * 64.99958 * 17 15 14 45 45 H 1.09000 * 109.47521 * 185.00119 * 17 15 14 46 46 H 0.96700 * 114.00324 * 180.02562 * 18 17 15 47 47 H 0.96998 * 120.00518 * 24.99832 * 19 15 14 48 48 H 0.96997 * 119.99868 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3802 0.0000 4 6 3.3047 1.3027 0.8296 5 6 2.9157 0.2822 1.9315 6 6 1.9973 -0.7057 1.1819 7 1 2.5672 -1.5800 0.8676 8 6 0.8610 -1.1291 2.0767 9 6 0.5212 -2.3998 2.3964 10 6 -0.5990 -2.2876 3.2536 11 6 -1.3431 -3.4003 3.8780 12 8 -1.0044 -4.5495 3.6713 13 7 -2.3966 -3.1417 4.6777 14 6 -3.1342 -4.2453 5.2974 15 6 -4.2742 -3.6824 6.1487 16 1 -3.8595 -3.1106 6.9788 17 6 -5.1196 -4.8346 6.6949 18 8 -5.5673 -5.6522 5.6118 19 7 -5.1134 -2.8089 5.3248 20 6 -5.8509 -1.8155 5.9119 21 1 -5.8142 -1.6765 6.9822 22 6 -6.6465 -0.9881 5.1314 23 7 -6.6917 -1.1579 3.8269 24 14 -7.6531 0.3664 5.9322 25 1 -6.8475 1.6124 5.9919 26 1 -8.8813 0.6087 5.1334 27 1 -8.0308 -0.0452 7.3082 28 7 -0.8523 -1.0011 3.3889 29 7 -0.0087 -0.3116 2.7081 30 1 -0.0005 0.6568 2.6523 31 1 -0.3634 0.6045 0.8311 32 1 -0.3634 0.4176 -0.9390 33 1 -0.3634 -1.0219 0.1078 34 1 2.2148 1.7038 -1.0182 35 1 1.2880 2.0596 0.4706 36 1 4.1302 0.9281 0.2243 37 1 3.5498 2.2722 1.2634 38 1 2.3743 0.7747 2.7392 39 1 3.7999 -0.2279 2.3138 40 1 1.0037 -3.3080 2.0667 41 1 -2.6665 -2.2247 4.8429 42 1 -3.5454 -4.8893 4.5200 43 1 -2.4599 -4.8235 5.9291 44 1 -4.5184 -5.4343 7.3783 45 1 -5.9817 -4.4323 7.2270 46 1 -6.1108 -6.4039 5.8849 47 1 -5.1466 -2.9339 4.3635 48 1 -7.2480 -0.5799 3.2816 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485996334.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:25 Heat of formation + Delta-G solvation = -9.867473 kcal Electronic energy + Delta-G solvation = -29585.219629 eV Core-core repulsion = 25483.319281 eV Total energy + Delta-G solvation = -4101.900347 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.01525 -40.59436 -39.87453 -38.57212 -36.39046 -35.21675 -33.49405 -33.13203 -32.89994 -32.63553 -30.12535 -28.86213 -27.15299 -26.64139 -25.68572 -24.45955 -22.96521 -22.18965 -21.85191 -21.63214 -20.78563 -19.41009 -18.59250 -18.14353 -18.01677 -17.35933 -17.16908 -16.80418 -16.43131 -16.28441 -15.96956 -15.61735 -15.30156 -15.13175 -14.87272 -14.82170 -14.60824 -14.45707 -14.31883 -14.16861 -13.66408 -13.59197 -13.04176 -12.77916 -12.71548 -12.63838 -12.54643 -12.29522 -12.26918 -12.07080 -11.99229 -11.88684 -11.74293 -11.64190 -11.31057 -10.96038 -10.70734 -10.51943 -10.22885 -9.99773 -9.40669 -9.00425 -7.89642 -5.19067 0.46365 0.97085 1.48028 1.49201 1.57288 1.74005 2.22740 2.35743 2.57258 2.96215 3.27803 3.41142 3.43346 3.59215 3.62496 3.72137 3.89907 3.99745 4.08470 4.15047 4.26002 4.33901 4.38158 4.44453 4.47141 4.55537 4.56147 4.60238 4.63723 4.86745 4.87239 4.90936 4.96327 5.00626 5.03894 5.13439 5.21653 5.24395 5.28363 5.44795 5.54179 5.81389 5.86922 5.97459 6.28452 6.45211 6.79778 7.08822 7.14909 7.36360 8.08884 8.34411 9.33218 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011854 B = 0.002913 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.453789 B = 9608.208088 C =11322.949949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.527 5.527 3 C 0.029 3.971 4 C -0.120 4.120 5 C -0.135 4.135 6 C 0.141 3.859 7 H 0.123 0.877 8 C 0.023 3.977 9 C -0.180 4.180 10 C -0.031 4.031 11 C 0.595 3.405 12 O -0.573 6.573 13 N -0.699 5.699 14 C 0.128 3.872 15 C 0.160 3.840 16 H 0.078 0.922 17 C 0.066 3.934 18 O -0.584 6.584 19 N -0.723 5.723 20 C -0.236 4.236 21 H 0.081 0.919 22 C -0.073 4.073 23 N -0.967 5.967 24 Si 0.970 3.030 25 H -0.288 1.288 26 H -0.302 1.302 27 H -0.269 1.269 28 N -0.265 5.265 29 N -0.363 5.363 30 H 0.452 0.548 31 H 0.025 0.975 32 H 0.078 0.922 33 H 0.053 0.947 34 H 0.092 0.908 35 H 0.050 0.950 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.065 0.935 39 H 0.098 0.902 40 H 0.169 0.831 41 H 0.411 0.589 42 H 0.055 0.945 43 H 0.084 0.916 44 H 0.068 0.932 45 H 0.037 0.963 46 H 0.386 0.614 47 H 0.371 0.629 48 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.523 3.888 -2.803 22.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.251 5.251 3 C -0.098 4.098 4 C -0.158 4.158 5 C -0.174 4.174 6 C 0.032 3.968 7 H 0.140 0.860 8 C -0.104 4.104 9 C -0.209 4.209 10 C -0.191 4.191 11 C 0.380 3.620 12 O -0.452 6.452 13 N -0.349 5.349 14 C 0.004 3.996 15 C 0.051 3.949 16 H 0.096 0.904 17 C -0.014 4.014 18 O -0.390 6.390 19 N -0.362 5.362 20 C -0.367 4.367 21 H 0.099 0.901 22 C -0.265 4.265 23 N -0.617 5.617 24 Si 0.800 3.200 25 H -0.216 1.216 26 H -0.229 1.229 27 H -0.193 1.193 28 N -0.102 5.102 29 N -0.081 5.081 30 H 0.300 0.700 31 H 0.043 0.957 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.110 0.890 35 H 0.068 0.932 36 H 0.106 0.894 37 H 0.111 0.889 38 H 0.083 0.917 39 H 0.117 0.883 40 H 0.187 0.813 41 H 0.248 0.752 42 H 0.073 0.927 43 H 0.102 0.898 44 H 0.086 0.914 45 H 0.056 0.944 46 H 0.234 0.766 47 H 0.203 0.797 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 21.413 4.058 -3.045 22.006 hybrid contribution -1.553 0.843 0.586 1.862 sum 19.860 4.901 -2.459 20.603 Atomic orbital electron populations 1.22667 0.87884 1.01170 1.01323 1.63911 1.07660 1.15834 1.37707 1.23313 0.96382 0.88057 1.02023 1.22716 0.97164 0.99850 0.96069 1.22913 0.99952 0.96589 0.97965 1.21404 0.89815 0.99579 0.86020 0.85969 1.21912 0.97472 0.90010 1.00978 1.21672 0.98432 0.98281 1.02480 1.21836 1.00946 0.90589 1.05737 1.17201 0.79814 0.86799 0.78168 1.90721 1.69243 1.21704 1.63500 1.45882 1.29721 1.11726 1.47539 1.21494 0.92715 0.88567 0.96873 1.20860 0.89511 0.90661 0.93860 0.90428 1.22848 0.97592 0.92317 0.88688 1.86528 1.73122 1.43808 1.35587 1.42475 1.52139 1.35573 1.06061 1.19613 1.18159 1.06423 0.92530 0.90075 1.25508 1.02528 1.02574 0.95917 1.69865 1.44768 1.42198 1.04875 0.85194 0.77694 0.79541 0.77597 1.21554 1.22942 1.19338 1.73659 1.15437 1.04888 1.16183 1.43590 1.20685 1.10319 1.33490 0.70020 0.95685 0.90316 0.92805 0.88970 0.93172 0.89365 0.88885 0.91658 0.88347 0.81346 0.75233 0.92704 0.89811 0.91386 0.94423 0.76631 0.79698 0.94399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 8.30 127.69 1.06 1.41 16 2 N -0.53 -8.35 5.44 -890.93 -4.85 -13.20 16 3 C 0.03 0.32 6.73 86.77 0.58 0.91 16 4 C -0.12 -0.92 7.08 31.98 0.23 -0.69 16 5 C -0.14 -1.37 6.46 31.78 0.21 -1.17 16 6 C 0.14 2.11 3.90 44.51 0.17 2.29 16 7 H 0.12 1.71 8.12 -2.39 -0.02 1.69 16 8 C 0.02 0.49 3.67 41.40 0.15 0.65 16 9 C -0.18 -4.96 10.72 22.41 0.24 -4.72 16 10 C -0.03 -1.07 7.13 42.45 0.30 -0.76 16 11 C 0.59 23.31 7.82 86.75 0.68 23.99 16 12 O -0.57 -24.70 16.93 -3.95 -0.07 -24.77 16 13 N -0.70 -27.14 5.38 -466.09 -2.51 -29.65 16 14 C 0.13 4.79 5.12 86.38 0.44 5.23 16 15 C 0.16 6.19 2.84 44.99 0.13 6.32 16 16 H 0.08 2.81 8.08 -2.39 -0.02 2.79 16 17 C 0.07 2.23 6.85 71.98 0.49 2.72 16 18 O -0.58 -20.73 12.64 -148.98 -1.88 -22.62 16 19 N -0.72 -35.80 4.51 -322.95 -1.46 -37.25 16 20 C -0.24 -12.61 9.93 84.03 0.83 -11.77 16 21 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 22 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 23 N -0.97 -59.55 13.06 21.65 0.28 -59.27 16 24 Si 0.97 45.66 29.55 68.60 2.03 47.69 16 25 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 26 H -0.30 -14.61 7.11 99.48 0.71 -13.91 16 27 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 28 N -0.26 -8.38 11.92 -48.18 -0.57 -8.95 16 29 N -0.36 -8.32 5.13 -47.93 -0.25 -8.56 16 30 H 0.45 7.78 7.85 -219.99 -1.73 6.06 16 31 H 0.02 0.47 5.40 -2.38 -0.01 0.46 16 32 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.05 1.31 7.14 -2.39 -0.02 1.29 16 34 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.05 0.53 7.68 -2.38 -0.02 0.51 16 36 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.06 0.70 7.58 -2.39 -0.02 0.68 16 39 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.17 4.28 8.06 -2.91 -0.02 4.26 16 41 H 0.41 16.75 7.86 -92.71 -0.73 16.02 16 42 H 0.05 2.33 7.39 -2.38 -0.02 2.31 16 43 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 44 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.39 9.57 9.12 -74.06 -0.68 8.90 16 47 H 0.37 20.95 7.80 -92.71 -0.72 20.22 16 48 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -74.07 391.30 -6.12 -80.18 By element: Atomic # 1 Polarization: 58.48 SS G_CDS: -2.83 Total: 55.65 kcal Atomic # 6 Polarization: 14.76 SS G_CDS: 5.99 Total: 20.75 kcal Atomic # 7 Polarization: -147.53 SS G_CDS: -9.35 Total: -156.88 kcal Atomic # 8 Polarization: -45.44 SS G_CDS: -1.95 Total: -47.39 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -74.07 -6.12 -80.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485996334.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.317 kcal (2) G-P(sol) polarization free energy of solvation -74.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds