Wall clock time and date at job start Tue Mar 31 2020 21:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36928 * 120.00366 * 2 1 4 4 H 1.08005 * 120.00404 * 203.32319 * 3 2 1 5 5 C 1.38819 * 119.99965 * 23.31916 * 3 2 1 6 6 N 1.31616 * 119.99854 * 14.40898 * 5 3 2 7 7 Si 1.86800 * 119.99919 * 194.40815 * 5 3 2 8 8 H 1.48503 * 109.47033 * 60.00285 * 7 5 3 9 9 H 1.48499 * 109.46910 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47352 * 299.99896 * 7 5 3 11 11 C 1.46504 * 119.99549 * 180.02562 * 2 1 3 12 12 C 1.52993 * 109.47181 * 89.99761 * 11 2 1 13 13 H 1.09004 * 110.89093 * 57.42752 * 12 11 2 14 14 C 1.55154 * 111.00653 * 293.54149 * 12 11 2 15 15 C 1.54318 * 102.94424 * 206.42448 * 14 12 11 16 16 N 1.47014 * 107.27476 * 22.19624 * 15 14 12 17 17 C 1.34777 * 125.65354 * 181.02247 * 16 15 14 18 18 O 1.21286 * 120.00074 * 180.02562 * 17 16 15 19 19 C 1.50697 * 119.99770 * 0.02562 * 17 16 15 20 20 C 1.52996 * 109.47079 * 179.97438 * 19 17 16 21 21 N 1.46505 * 109.47273 * 179.97438 * 20 19 17 22 22 N 1.40168 * 126.35264 * 270.00258 * 21 20 19 23 23 C 1.29400 * 108.14105 * 179.75700 * 22 21 20 24 24 N 1.37366 * 108.82826 * 0.38352 * 23 22 21 25 25 C 1.46501 * 125.83182 * 179.87666 * 24 23 22 26 26 C 1.34818 * 108.33337 * 359.61195 * 24 23 22 27 27 O 1.21809 * 126.30027 * 180.19169 * 26 24 23 28 28 C 1.47429 * 108.69915 * 1.28410 * 16 15 14 29 29 H 1.08998 * 109.46882 * 275.18800 * 1 2 3 30 30 H 1.08996 * 109.47070 * 35.17952 * 1 2 3 31 31 H 1.08999 * 109.47944 * 155.18739 * 1 2 3 32 32 H 0.97002 * 119.99946 * 179.97438 * 6 5 3 33 33 H 1.08999 * 109.47202 * 329.99075 * 11 2 1 34 34 H 1.09002 * 109.46468 * 209.99782 * 11 2 1 35 35 H 1.09005 * 110.71979 * 88.05960 * 14 12 11 36 36 H 1.08996 * 110.72322 * 324.79477 * 14 12 11 37 37 H 1.08999 * 109.88590 * 262.77601 * 15 14 12 38 38 H 1.09005 * 110.01152 * 141.68472 * 15 14 12 39 39 H 1.09004 * 109.47133 * 60.00543 * 19 17 16 40 40 H 1.08997 * 109.47230 * 300.00435 * 19 17 16 41 41 H 1.09005 * 109.47303 * 60.00375 * 20 19 17 42 42 H 1.08997 * 109.47578 * 300.00385 * 20 19 17 43 43 H 1.07997 * 125.58606 * 180.22457 * 23 22 21 44 44 H 1.08992 * 109.46718 * 269.69318 * 25 24 23 45 45 H 1.09004 * 109.46937 * 29.68867 * 25 24 23 46 46 H 1.09000 * 109.46959 * 149.68786 * 25 24 23 47 47 H 1.09003 * 110.36910 * 94.48833 * 28 16 15 48 48 H 1.09000 * 110.36874 * 216.80617 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1636 1.2240 -0.3703 5 6 1.5407 2.3389 0.4759 6 7 0.4322 2.2549 1.1805 7 14 2.2946 4.0098 0.1163 8 1 2.3588 4.2181 -1.3526 9 1 1.4586 5.0725 0.7303 10 1 3.6652 4.0672 0.6848 11 6 2.1974 -1.2688 -0.0006 12 6 2.4523 -1.7099 -1.4432 13 1 3.0019 -0.9452 -1.9921 14 6 1.1223 -2.0616 -2.1605 15 6 1.5674 -3.0734 -3.2373 16 7 2.8439 -3.6513 -2.7924 17 6 3.5707 -4.5638 -3.4672 18 8 4.6136 -4.9727 -3.0022 19 6 3.0877 -5.0762 -4.7995 20 6 4.0897 -6.0937 -5.3484 21 7 3.6198 -6.5923 -6.6434 22 7 2.7955 -7.7060 -6.8555 23 6 2.5968 -7.8236 -8.1287 24 7 3.2750 -6.8206 -8.7777 25 6 3.3078 -6.6057 -10.2265 26 6 3.9003 -6.0644 -7.8532 27 8 4.5918 -5.0854 -8.0701 28 6 3.1941 -3.0718 -1.4828 29 1 -0.3633 0.0929 1.0234 30 1 -0.3633 0.8399 -0.5921 31 1 -0.3635 -0.9327 -0.4312 32 1 0.0069 3.0607 1.5133 33 1 1.6084 -2.0286 0.5131 34 1 3.1499 -1.1387 0.5133 35 1 0.6863 -1.1750 -2.6211 36 1 0.4195 -2.5217 -1.4660 37 1 1.7036 -2.5638 -4.1912 38 1 0.8204 -3.8605 -3.3412 39 1 2.9965 -4.2439 -5.4975 40 1 2.1158 -5.5537 -4.6745 41 1 4.1814 -6.9262 -4.6507 42 1 5.0613 -5.6159 -5.4735 43 1 1.9982 -8.5868 -8.6036 44 1 4.1466 -7.1533 -10.6560 45 1 2.3770 -6.9619 -10.6678 46 1 3.4242 -5.5418 -10.4334 47 1 2.8476 -3.7187 -0.6768 48 1 4.2709 -2.9190 -1.4113 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494148994.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:41 Heat of formation + Delta-G solvation = 41.048237 kcal Electronic energy + Delta-G solvation = -28917.853891 eV Core-core repulsion = 24818.161414 eV Total energy + Delta-G solvation = -4099.692476 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.76144 -40.05965 -37.80119 -37.56122 -35.98194 -35.34629 -33.16698 -32.27611 -30.64108 -29.99476 -29.16536 -27.88991 -26.18784 -25.75216 -24.58512 -23.07639 -22.47726 -21.43029 -21.16126 -19.81216 -19.15431 -18.10823 -17.19891 -16.96065 -16.60965 -16.51055 -16.06192 -15.89142 -15.48213 -15.13110 -14.75735 -14.45945 -14.12718 -13.77646 -13.60130 -13.40573 -13.26037 -13.21974 -13.02701 -12.70583 -12.66914 -12.46468 -12.23245 -12.09599 -11.94501 -11.55131 -11.31728 -11.03748 -10.88586 -10.72380 -10.58325 -10.51877 -10.46595 -10.35319 -10.03015 -9.92355 -9.82866 -9.81445 -8.92401 -8.59899 -8.52213 -6.72526 -5.71585 -3.18365 1.37632 1.55981 2.32893 2.57988 2.68967 3.07102 3.39794 3.45098 3.46379 4.03044 4.29031 4.43920 4.50842 4.54688 4.58262 4.72313 4.83896 4.85288 5.01010 5.02503 5.13625 5.16493 5.33653 5.37882 5.47154 5.47865 5.53827 5.59069 5.73948 5.83942 5.87558 5.96666 6.08662 6.14741 6.22012 6.23008 6.41666 6.51811 6.74279 6.74761 6.89018 7.24448 7.34516 7.54031 7.70052 7.72597 7.81670 8.10577 8.41048 9.24735 9.88361 10.37273 11.32840 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.020486 B = 0.001961 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.430992 B =14278.144939 C =14670.706244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.598 5.598 3 C -0.255 4.255 4 H 0.067 0.933 5 C 0.002 3.998 6 N -0.907 5.907 7 Si 0.903 3.097 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.162 3.838 12 C -0.118 4.118 13 H 0.082 0.918 14 C -0.116 4.116 15 C 0.098 3.902 16 N -0.613 5.613 17 C 0.534 3.466 18 O -0.547 6.547 19 C -0.155 4.155 20 C 0.177 3.823 21 N -0.451 5.451 22 N -0.280 5.280 23 C 0.252 3.748 24 N -0.564 5.564 25 C 0.098 3.902 26 C 0.642 3.358 27 O -0.550 6.550 28 C 0.109 3.891 29 H 0.029 0.971 30 H 0.037 0.963 31 H 0.002 0.998 32 H 0.252 0.748 33 H 0.038 0.962 34 H 0.051 0.949 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.231 0.769 44 H 0.073 0.927 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.068 0.932 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.288 -22.351 -20.984 30.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.321 5.321 3 C -0.385 4.385 4 H 0.084 0.916 5 C -0.196 4.196 6 N -0.551 5.551 7 Si 0.733 3.267 8 H -0.212 1.212 9 H -0.217 1.217 10 H -0.209 1.209 11 C 0.034 3.966 12 C -0.140 4.140 13 H 0.101 0.899 14 C -0.154 4.154 15 C -0.025 4.025 16 N -0.347 5.347 17 C 0.322 3.678 18 O -0.425 6.425 19 C -0.196 4.196 20 C 0.056 3.944 21 N -0.272 5.272 22 N -0.100 5.100 23 C -0.047 4.047 24 N -0.293 5.293 25 C -0.044 4.044 26 C 0.341 3.659 27 O -0.423 6.423 28 C -0.013 4.013 29 H 0.048 0.952 30 H 0.056 0.944 31 H 0.020 0.980 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.115 0.885 40 H 0.118 0.882 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.247 0.753 44 H 0.092 0.908 45 H 0.107 0.893 46 H 0.107 0.893 47 H 0.086 0.914 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.520 -22.111 -19.854 29.721 hybrid contribution 0.215 1.280 -1.061 1.677 sum 0.735 -20.831 -20.915 29.528 Atomic orbital electron populations 1.20831 0.82733 0.95407 0.99413 1.43824 1.01731 1.00518 1.85996 1.19121 0.98462 0.85638 1.35290 0.91550 1.25011 0.98083 0.98503 0.98037 1.70061 1.20611 1.27326 1.37146 0.86364 0.78440 0.83952 0.77956 1.21155 1.21693 1.20919 1.20609 0.96412 0.88626 0.90937 1.23248 0.94799 0.94347 1.01585 0.89926 1.22616 0.98259 0.97914 0.96568 1.22177 0.84754 0.96641 0.98956 1.48572 1.23214 1.41288 1.21584 1.19859 0.83650 0.78582 0.85705 1.90718 1.23455 1.58517 1.69854 1.22002 1.01409 1.00723 0.95456 1.21204 0.96795 0.97446 0.78908 1.49047 1.46173 1.25131 1.06833 1.77020 1.12382 1.05729 1.14918 1.25954 0.96749 0.93528 0.88510 1.45971 1.46346 1.27804 1.09180 1.21832 1.03492 1.04414 0.74627 1.16826 0.83075 0.84249 0.81754 1.91117 1.42776 1.26170 1.82247 1.22426 1.00734 0.94466 0.83697 0.95242 0.94438 0.97970 0.93745 0.94322 0.93109 0.89759 0.90785 0.91705 0.91783 0.88454 0.88178 0.87721 0.87725 0.75296 0.90843 0.89263 0.89346 0.91425 0.90623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.78 8.61 59.85 0.52 4.29 16 2 N -0.60 -14.43 2.84 -181.12 -0.51 -14.95 16 3 C -0.26 -6.89 9.64 -15.06 -0.15 -7.04 16 4 H 0.07 1.76 7.87 -52.48 -0.41 1.35 16 5 C 0.00 0.06 5.07 -17.43 -0.09 -0.03 16 6 N -0.91 -26.28 10.81 55.49 0.60 -25.68 16 7 Si 0.90 21.86 29.58 -169.99 -5.03 16.83 16 8 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 9 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 C 0.16 3.16 5.16 -4.04 -0.02 3.14 16 12 C -0.12 -1.93 3.31 -88.36 -0.29 -2.22 16 13 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 14 C -0.12 -1.65 5.02 -24.90 -0.13 -1.78 16 15 C 0.10 1.17 6.48 -3.07 -0.02 1.15 16 16 N -0.61 -8.51 3.32 -170.38 -0.57 -9.08 16 17 C 0.53 7.49 7.85 -10.99 -0.09 7.41 16 18 O -0.55 -9.33 16.24 5.55 0.09 -9.24 16 19 C -0.15 -1.68 5.22 -27.89 -0.15 -1.83 16 20 C 0.18 1.97 5.68 -4.04 -0.02 1.95 16 21 N -0.45 -4.91 3.63 -65.12 -0.24 -5.14 16 22 N -0.28 -2.44 12.53 29.87 0.37 -2.07 16 23 C 0.25 1.28 12.66 -89.11 -1.13 0.15 16 24 N -0.56 -4.00 3.14 -130.11 -0.41 -4.41 16 25 C 0.10 0.32 11.05 59.85 0.66 0.98 16 26 C 0.64 7.52 8.60 -86.73 -0.75 6.77 16 27 O -0.55 -8.48 17.71 5.09 0.09 -8.39 16 28 C 0.11 1.63 6.38 -2.41 -0.02 1.61 16 29 H 0.03 0.76 7.32 -51.93 -0.38 0.38 16 30 H 0.04 0.95 7.40 -51.93 -0.38 0.57 16 31 H 0.00 0.04 6.16 -51.93 -0.32 -0.28 16 32 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 33 H 0.04 0.70 8.04 -51.93 -0.42 0.29 16 34 H 0.05 1.01 8.04 -51.93 -0.42 0.60 16 35 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.07 1.04 7.15 -51.93 -0.37 0.67 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.10 1.11 8.10 -51.93 -0.42 0.69 16 42 H 0.10 1.28 8.07 -51.93 -0.42 0.86 16 43 H 0.23 -0.13 8.06 -52.49 -0.42 -0.55 16 44 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 45 H 0.09 -0.01 8.14 -51.93 -0.42 -0.43 16 46 H 0.09 0.41 8.08 -51.93 -0.42 -0.01 16 47 H 0.07 0.97 8.04 -51.93 -0.42 0.55 16 48 H 0.08 1.19 8.03 -51.93 -0.42 0.78 16 LS Contribution 395.66 15.07 5.96 5.96 Total: -1.00 -36.43 395.66 -9.03 -45.46 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -7.74 Total: -3.86 kcal Atomic # 6 Polarization: 16.22 SS G_CDS: -1.66 Total: 14.56 kcal Atomic # 7 Polarization: -60.57 SS G_CDS: -0.75 Total: -61.32 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: 0.18 Total: -17.63 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.43 -9.03 -45.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494148994.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.513 kcal (2) G-P(sol) polarization free energy of solvation -36.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds