Wall clock time and date at job start Tue Mar 31 2020 21:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36928 * 120.00366 * 2 1 4 4 H 1.08005 * 120.00404 * 203.32319 * 3 2 1 5 5 C 1.38819 * 119.99965 * 23.31916 * 3 2 1 6 6 N 1.31616 * 119.99854 * 14.40898 * 5 3 2 7 7 Si 1.86800 * 119.99919 * 194.40815 * 5 3 2 8 8 H 1.48503 * 109.47033 * 60.00285 * 7 5 3 9 9 H 1.48499 * 109.46910 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47352 * 299.99896 * 7 5 3 11 11 C 1.46504 * 119.99549 * 180.02562 * 2 1 3 12 12 C 1.52993 * 109.47181 * 89.99761 * 11 2 1 13 13 H 1.09004 * 110.89093 * 57.42752 * 12 11 2 14 14 C 1.55154 * 111.00653 * 293.54149 * 12 11 2 15 15 C 1.54318 * 102.94424 * 206.42448 * 14 12 11 16 16 N 1.47014 * 107.27476 * 22.19624 * 15 14 12 17 17 C 1.34777 * 125.65354 * 181.02247 * 16 15 14 18 18 O 1.21286 * 120.00074 * 180.02562 * 17 16 15 19 19 C 1.50697 * 119.99770 * 0.02562 * 17 16 15 20 20 C 1.52996 * 109.47079 * 179.97438 * 19 17 16 21 21 N 1.46505 * 109.47273 * 179.97438 * 20 19 17 22 22 N 1.40168 * 126.35264 * 270.00258 * 21 20 19 23 23 C 1.29400 * 108.14105 * 179.75700 * 22 21 20 24 24 N 1.37366 * 108.82826 * 0.38352 * 23 22 21 25 25 C 1.46501 * 125.83182 * 179.87666 * 24 23 22 26 26 C 1.34818 * 108.33337 * 359.61195 * 24 23 22 27 27 O 1.21809 * 126.30027 * 180.19169 * 26 24 23 28 28 C 1.47429 * 108.69915 * 1.28410 * 16 15 14 29 29 H 1.08998 * 109.46882 * 275.18800 * 1 2 3 30 30 H 1.08996 * 109.47070 * 35.17952 * 1 2 3 31 31 H 1.08999 * 109.47944 * 155.18739 * 1 2 3 32 32 H 0.97002 * 119.99946 * 179.97438 * 6 5 3 33 33 H 1.08999 * 109.47202 * 329.99075 * 11 2 1 34 34 H 1.09002 * 109.46468 * 209.99782 * 11 2 1 35 35 H 1.09005 * 110.71979 * 88.05960 * 14 12 11 36 36 H 1.08996 * 110.72322 * 324.79477 * 14 12 11 37 37 H 1.08999 * 109.88590 * 262.77601 * 15 14 12 38 38 H 1.09005 * 110.01152 * 141.68472 * 15 14 12 39 39 H 1.09004 * 109.47133 * 60.00543 * 19 17 16 40 40 H 1.08997 * 109.47230 * 300.00435 * 19 17 16 41 41 H 1.09005 * 109.47303 * 60.00375 * 20 19 17 42 42 H 1.08997 * 109.47578 * 300.00385 * 20 19 17 43 43 H 1.07997 * 125.58606 * 180.22457 * 23 22 21 44 44 H 1.08992 * 109.46718 * 269.69318 * 25 24 23 45 45 H 1.09004 * 109.46937 * 29.68867 * 25 24 23 46 46 H 1.09000 * 109.46959 * 149.68786 * 25 24 23 47 47 H 1.09003 * 110.36910 * 94.48833 * 28 16 15 48 48 H 1.09000 * 110.36874 * 216.80617 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1636 1.2240 -0.3703 5 6 1.5407 2.3389 0.4759 6 7 0.4322 2.2549 1.1805 7 14 2.2946 4.0098 0.1163 8 1 2.3588 4.2181 -1.3526 9 1 1.4586 5.0725 0.7303 10 1 3.6652 4.0672 0.6848 11 6 2.1974 -1.2688 -0.0006 12 6 2.4523 -1.7099 -1.4432 13 1 3.0019 -0.9452 -1.9921 14 6 1.1223 -2.0616 -2.1605 15 6 1.5674 -3.0734 -3.2373 16 7 2.8439 -3.6513 -2.7924 17 6 3.5707 -4.5638 -3.4672 18 8 4.6136 -4.9727 -3.0022 19 6 3.0877 -5.0762 -4.7995 20 6 4.0897 -6.0937 -5.3484 21 7 3.6198 -6.5923 -6.6434 22 7 2.7955 -7.7060 -6.8555 23 6 2.5968 -7.8236 -8.1287 24 7 3.2750 -6.8206 -8.7777 25 6 3.3078 -6.6057 -10.2265 26 6 3.9003 -6.0644 -7.8532 27 8 4.5918 -5.0854 -8.0701 28 6 3.1941 -3.0718 -1.4828 29 1 -0.3633 0.0929 1.0234 30 1 -0.3633 0.8399 -0.5921 31 1 -0.3635 -0.9327 -0.4312 32 1 0.0069 3.0607 1.5133 33 1 1.6084 -2.0286 0.5131 34 1 3.1499 -1.1387 0.5133 35 1 0.6863 -1.1750 -2.6211 36 1 0.4195 -2.5217 -1.4660 37 1 1.7036 -2.5638 -4.1912 38 1 0.8204 -3.8605 -3.3412 39 1 2.9965 -4.2439 -5.4975 40 1 2.1158 -5.5537 -4.6745 41 1 4.1814 -6.9262 -4.6507 42 1 5.0613 -5.6159 -5.4735 43 1 1.9982 -8.5868 -8.6036 44 1 4.1466 -7.1533 -10.6560 45 1 2.3770 -6.9619 -10.6678 46 1 3.4242 -5.5418 -10.4334 47 1 2.8476 -3.7187 -0.6768 48 1 4.2709 -2.9190 -1.4113 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494148994.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:40 Heat of formation + Delta-G solvation = 18.029800 kcal Electronic energy + Delta-G solvation = -28918.852045 eV Core-core repulsion = 24818.161414 eV Total energy + Delta-G solvation = -4100.690631 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.41019 -41.20667 -39.07777 -38.43552 -37.11329 -36.65121 -34.13156 -33.69110 -32.17564 -30.91766 -30.39306 -28.43102 -27.92210 -27.26311 -25.67763 -24.11054 -23.19370 -22.92637 -22.11444 -21.21927 -20.25267 -18.90366 -18.56903 -17.96235 -17.78119 -17.49201 -17.03549 -16.79501 -16.66252 -16.43850 -15.97205 -15.45664 -15.26123 -15.19858 -14.70963 -14.59897 -14.46700 -14.26256 -14.00946 -13.67724 -13.62041 -13.50017 -13.42996 -13.21370 -12.90511 -12.88180 -12.76836 -12.59362 -12.51092 -12.42023 -12.22129 -11.96647 -11.74802 -11.62645 -11.40109 -11.37842 -11.20373 -10.93621 -10.60429 -9.71878 -9.67549 -8.72709 -7.80812 -5.29177 0.70614 1.09022 1.46098 1.47513 1.48266 1.53734 1.54152 1.91606 2.28684 2.51547 3.30766 3.35159 3.45075 3.60779 3.69320 3.75610 3.90153 3.98954 4.11726 4.14308 4.26995 4.27572 4.33022 4.43678 4.53458 4.59317 4.61926 4.63444 4.68834 4.82206 4.83356 4.85316 4.94304 4.95409 5.03045 5.08496 5.10259 5.23258 5.28911 5.36985 5.49900 5.66052 5.69576 5.76691 6.35265 6.44573 6.62870 6.92296 7.00136 7.18448 7.91563 8.33735 9.21018 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.020486 B = 0.001961 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.430992 B =14278.144939 C =14670.706244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.613 5.613 3 C -0.259 4.259 4 H 0.065 0.935 5 C -0.053 4.053 6 N -0.936 5.936 7 Si 0.963 3.037 8 H -0.281 1.281 9 H -0.294 1.294 10 H -0.278 1.278 11 C 0.162 3.838 12 C -0.108 4.108 13 H 0.059 0.941 14 C -0.111 4.111 15 C 0.103 3.897 16 N -0.615 5.615 17 C 0.532 3.468 18 O -0.583 6.583 19 C -0.137 4.137 20 C 0.181 3.819 21 N -0.458 5.458 22 N -0.314 5.314 23 C 0.281 3.719 24 N -0.559 5.559 25 C 0.091 3.909 26 C 0.624 3.376 27 O -0.602 6.602 28 C 0.116 3.884 29 H 0.000 1.000 30 H 0.010 0.990 31 H 0.043 0.957 32 H 0.247 0.753 33 H 0.056 0.944 34 H 0.039 0.961 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.123 0.877 41 H 0.107 0.893 42 H 0.082 0.918 43 H 0.291 0.709 44 H 0.084 0.916 45 H 0.134 0.866 46 H 0.069 0.931 47 H 0.079 0.921 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.690 -24.792 -23.296 34.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.336 5.336 3 C -0.390 4.390 4 H 0.082 0.918 5 C -0.248 4.248 6 N -0.583 5.583 7 Si 0.791 3.209 8 H -0.207 1.207 9 H -0.220 1.220 10 H -0.204 1.204 11 C 0.035 3.965 12 C -0.130 4.130 13 H 0.078 0.922 14 C -0.149 4.149 15 C -0.019 4.019 16 N -0.348 5.348 17 C 0.322 3.678 18 O -0.463 6.463 19 C -0.178 4.178 20 C 0.059 3.941 21 N -0.277 5.277 22 N -0.135 5.135 23 C -0.017 4.017 24 N -0.286 5.286 25 C -0.049 4.049 26 C 0.323 3.677 27 O -0.479 6.479 28 C -0.007 4.007 29 H 0.018 0.982 30 H 0.029 0.971 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.058 0.942 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.141 0.859 41 H 0.125 0.875 42 H 0.101 0.899 43 H 0.306 0.694 44 H 0.102 0.898 45 H 0.152 0.848 46 H 0.088 0.912 47 H 0.097 0.903 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.899 -24.609 -22.212 33.163 hybrid contribution 0.659 1.907 -0.417 2.060 sum -0.240 -22.703 -22.629 32.055 Atomic orbital electron populations 1.20588 0.82525 0.96335 0.97411 1.44039 1.02151 1.01322 1.86109 1.19401 0.98498 0.86987 1.34079 0.91752 1.25718 0.98884 1.01622 0.98557 1.70215 1.21936 1.27603 1.38547 0.85410 0.77654 0.80059 0.77728 1.20707 1.22034 1.20413 1.20733 0.95648 0.87189 0.92919 1.22897 0.96391 0.94497 0.99249 0.92238 1.22556 0.96920 0.98283 0.97137 1.22246 0.84403 0.96975 0.98265 1.48628 1.23891 1.41154 1.21151 1.20359 0.83020 0.78073 0.86376 1.90702 1.25021 1.59770 1.70853 1.21871 1.02063 1.00578 0.93247 1.21011 0.96068 0.97514 0.79533 1.49004 1.46563 1.25847 1.06308 1.77059 1.13771 1.05575 1.17124 1.27180 0.94487 0.92638 0.87352 1.46188 1.45180 1.27220 1.10012 1.22174 1.06412 1.03793 0.72532 1.17171 0.83365 0.84400 0.82813 1.91060 1.45127 1.28560 1.83148 1.22241 0.99717 0.93785 0.84948 0.98217 0.97088 0.93839 0.94333 0.92540 0.94217 0.90762 0.89894 0.90730 0.88612 0.88442 0.85933 0.87492 0.89936 0.69447 0.89750 0.84811 0.91187 0.90277 0.92023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.28 8.61 127.77 1.10 9.38 16 2 N -0.61 -29.66 2.84 -726.94 -2.06 -31.73 16 3 C -0.26 -14.14 9.64 84.04 0.81 -13.33 16 4 H 0.06 3.46 7.87 -2.91 -0.02 3.44 16 5 C -0.05 -2.96 5.07 84.86 0.43 -2.53 16 6 N -0.94 -55.36 10.81 21.65 0.23 -55.13 16 7 Si 0.96 45.54 29.58 68.60 2.03 47.57 16 8 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 9 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 11 C 0.16 6.21 5.16 86.38 0.45 6.66 16 12 C -0.11 -3.49 3.31 -9.33 -0.03 -3.52 16 13 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 14 C -0.11 -2.94 5.02 31.78 0.16 -2.78 16 15 C 0.10 2.18 6.48 86.73 0.56 2.75 16 16 N -0.62 -16.11 3.32 -811.36 -2.70 -18.81 16 17 C 0.53 14.48 7.85 87.66 0.69 15.17 16 18 O -0.58 -20.02 16.24 -3.05 -0.05 -20.07 16 19 C -0.14 -2.81 5.22 29.85 0.16 -2.65 16 20 C 0.18 4.02 5.68 86.38 0.49 4.51 16 21 N -0.46 -9.60 3.63 -478.01 -1.73 -11.33 16 22 N -0.31 -4.71 12.53 -59.41 -0.74 -5.45 16 23 C 0.28 1.74 12.66 179.82 2.28 4.02 16 24 N -0.56 -6.57 3.14 -683.69 -2.15 -8.72 16 25 C 0.09 0.35 11.05 127.77 1.41 1.76 16 26 C 0.62 14.37 8.60 178.99 1.54 15.91 16 27 O -0.60 -19.23 17.71 -4.70 -0.08 -19.31 16 28 C 0.12 3.36 6.38 86.93 0.55 3.92 16 29 H 0.00 -0.02 7.32 -2.39 -0.02 -0.04 16 30 H 0.01 0.54 7.40 -2.39 -0.02 0.52 16 31 H 0.04 1.64 6.16 -2.39 -0.01 1.63 16 32 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 33 H 0.06 1.97 8.04 -2.39 -0.02 1.95 16 34 H 0.04 1.59 8.04 -2.39 -0.02 1.57 16 35 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 36 H 0.08 2.07 7.15 -2.39 -0.02 2.05 16 37 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 39 H 0.10 2.04 8.14 -2.38 -0.02 2.02 16 40 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.11 2.27 8.10 -2.38 -0.02 2.25 16 42 H 0.08 2.16 8.07 -2.39 -0.02 2.14 16 43 H 0.29 -2.17 8.06 -2.91 -0.02 -2.19 16 44 H 0.08 0.17 8.14 -2.39 -0.02 0.15 16 45 H 0.13 -0.68 8.14 -2.39 -0.02 -0.70 16 46 H 0.07 0.57 8.08 -2.39 -0.02 0.55 16 47 H 0.08 2.13 8.04 -2.39 -0.02 2.11 16 48 H 0.06 1.96 8.03 -2.39 -0.02 1.94 16 Total: -1.00 -83.47 395.66 4.28 -79.19 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: 0.95 Total: 4.53 kcal Atomic # 6 Polarization: 28.67 SS G_CDS: 10.59 Total: 39.27 kcal Atomic # 7 Polarization: -122.02 SS G_CDS: -9.15 Total: -131.17 kcal Atomic # 8 Polarization: -39.25 SS G_CDS: -0.13 Total: -39.38 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -83.47 4.28 -79.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494148994.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.218 kcal (2) G-P(sol) polarization free energy of solvation -83.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds