Wall clock time and date at job start Tue Mar 31 2020 21:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46906 * 110.99568 * 2 1 4 4 C 1.52996 * 109.46878 * 66.04845 * 3 2 1 5 5 N 1.46504 * 109.46878 * 179.97438 * 4 3 2 6 6 C 1.46500 * 120.00028 * 270.00036 * 5 4 3 7 7 C 1.34776 * 120.00102 * 89.99982 * 5 4 3 8 8 O 1.21284 * 119.99993 * 0.02562 * 7 5 4 9 9 C 1.50698 * 120.00297 * 179.97438 * 7 5 4 10 10 C 1.52998 * 109.47192 * 180.02562 * 9 7 5 11 11 C 1.50698 * 109.47192 * 179.97438 * 10 9 7 12 12 C 1.39874 * 126.04031 * 269.99886 * 11 10 9 13 13 N 1.30836 * 108.20052 * 179.73886 * 12 11 10 14 14 N 1.40084 * 108.20904 * 0.40640 * 13 12 11 15 15 H 0.97001 * 126.04219 * 179.85882 * 14 13 12 16 16 C 1.34947 * 107.92164 * 359.58781 * 14 13 12 17 17 C 1.46904 * 111.00063 * 236.04829 * 2 1 3 18 18 C 1.50695 * 109.47203 * 293.95516 * 17 2 1 19 19 O 1.21294 * 119.99861 * 359.97438 * 18 17 2 20 20 N 1.34775 * 119.99902 * 180.02562 * 18 17 2 21 21 C 1.37104 * 119.99707 * 179.97438 * 20 18 17 22 22 H 1.07995 * 119.99889 * 0.02562 * 21 20 18 23 23 C 1.38946 * 119.99629 * 180.02562 * 21 20 18 24 24 N 1.31413 * 119.99638 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 120.00264 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.47183 * 90.00190 * 25 23 21 27 27 H 1.48504 * 109.47091 * 209.99949 * 25 23 21 28 28 H 1.48501 * 109.47248 * 329.99967 * 25 23 21 29 29 H 1.09004 * 109.47538 * 59.99692 * 1 2 3 30 30 H 1.08997 * 109.46790 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47425 * 299.99797 * 1 2 3 32 32 H 1.08994 * 109.47354 * 306.04694 * 3 2 1 33 33 H 1.09005 * 109.46778 * 186.04311 * 3 2 1 34 34 H 1.09003 * 109.47095 * 60.00065 * 4 3 2 35 35 H 1.08999 * 109.47629 * 299.99494 * 4 3 2 36 36 H 1.09007 * 109.47081 * 269.99884 * 6 5 4 37 37 H 1.08997 * 109.47304 * 30.00160 * 6 5 4 38 38 H 1.09003 * 109.47358 * 150.00368 * 6 5 4 39 39 H 1.08994 * 109.46963 * 59.99584 * 9 7 5 40 40 H 1.09004 * 109.46771 * 299.99960 * 9 7 5 41 41 H 1.09007 * 109.47384 * 60.00098 * 10 9 7 42 42 H 1.09002 * 109.46954 * 300.00115 * 10 9 7 43 43 H 1.08001 * 125.89534 * 0.02562 * 12 11 10 44 44 H 1.08006 * 126.12506 * 180.22115 * 16 14 13 45 45 H 1.09004 * 109.46647 * 53.95159 * 17 2 1 46 46 H 1.09004 * 109.46896 * 173.94863 * 17 2 1 47 47 H 0.96992 * 120.00281 * 359.97438 * 20 18 17 48 48 H 0.96999 * 119.99518 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6313 2.0574 1.3183 5 7 2.1568 3.4250 1.3185 6 6 3.5017 3.6928 1.8339 7 6 1.4029 4.4367 0.8446 8 8 0.2892 4.2150 0.4184 9 6 1.9431 5.8435 0.8454 10 6 0.8953 6.7925 0.2602 11 6 1.4353 8.1994 0.2615 12 6 1.3011 9.1314 1.2958 13 7 1.9043 10.2343 0.9330 14 7 2.4342 10.0418 -0.3494 15 1 2.9314 10.6955 -0.8655 16 6 2.1357 8.7843 -0.7376 17 6 1.9955 -0.7660 -1.1376 18 6 1.6369 -2.2203 -0.9730 19 8 1.0054 -2.5832 -0.0031 20 7 2.0189 -3.1180 -1.9029 21 6 1.6932 -4.4413 -1.7528 22 1 1.1302 -4.7642 -0.8897 23 6 2.0875 -5.3668 -2.7113 24 7 1.7748 -6.6351 -2.5677 25 14 3.0619 -4.8082 -4.2039 26 1 4.5140 -4.8754 -3.9005 27 1 2.7552 -5.6946 -5.3553 28 1 2.6911 -3.4107 -4.5425 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.5610 1.9274 -0.8308 33 1 3.0797 1.3445 -0.1082 34 1 2.0658 1.5015 2.1492 35 1 0.5471 2.0845 1.4266 36 1 3.4457 3.9088 2.9008 37 1 4.1333 2.8192 1.6727 38 1 3.9270 4.5499 1.3116 39 1 2.8493 5.8850 0.2412 40 1 2.1739 6.1435 1.8676 41 1 -0.0107 6.7509 0.8648 42 1 0.6641 6.4926 -0.7620 43 1 0.7919 8.9672 2.2340 44 1 2.4070 8.3268 -1.6777 45 1 1.5610 -0.3871 -2.0628 46 1 3.0798 -0.6610 -1.1757 47 1 2.5243 -2.8279 -2.6783 48 1 2.0504 -7.2812 -3.2366 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496796353.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:30 Heat of formation + Delta-G solvation = 19.578328 kcal Electronic energy + Delta-G solvation = -28137.729302 eV Core-core repulsion = 24037.105821 eV Total energy + Delta-G solvation = -4100.623481 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.62494 -40.15841 -38.73631 -36.87891 -35.48124 -34.38617 -33.86988 -31.77063 -31.65898 -30.58801 -29.15740 -27.80621 -26.95250 -25.64522 -24.55747 -23.30414 -22.40757 -21.14740 -20.39167 -19.38506 -19.19466 -18.29305 -18.20089 -17.14309 -16.58644 -16.18304 -15.86935 -15.31826 -15.04759 -14.97161 -14.88964 -14.51720 -14.38268 -14.12507 -13.77212 -13.46598 -13.35334 -13.07510 -13.02111 -12.85851 -12.78475 -12.67739 -12.40717 -12.26660 -12.07218 -11.88375 -11.48900 -11.43172 -11.27950 -11.00142 -10.95428 -10.78943 -10.58594 -10.11231 -10.00827 -9.95979 -9.51959 -8.96736 -8.93159 -8.50969 -8.16009 -7.93636 -6.29352 -3.80525 1.43904 2.29247 2.43240 2.45666 2.77163 3.03546 3.07540 3.15763 3.76410 4.04822 4.11910 4.21578 4.42494 4.45213 4.68503 4.76075 4.81438 4.85075 4.95152 5.00912 5.09369 5.14806 5.21142 5.23645 5.27868 5.39885 5.40604 5.48905 5.55974 5.70325 5.75066 5.82089 5.87417 5.88405 5.91026 5.97728 6.02417 6.19543 6.28942 6.58176 6.79326 7.13799 7.19131 7.19265 7.33142 7.60726 7.97782 8.16865 8.62530 8.97408 9.44626 9.86094 10.83856 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023868 B = 0.001685 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.832743 B =16616.380124 C =17151.220663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.516 5.516 3 C 0.043 3.957 4 C 0.117 3.883 5 N -0.618 5.618 6 C 0.077 3.923 7 C 0.509 3.491 8 O -0.536 6.536 9 C -0.132 4.132 10 C -0.026 4.026 11 C -0.235 4.235 12 C 0.056 3.944 13 N -0.297 5.297 14 N -0.479 5.479 15 H 0.439 0.561 16 C 0.060 3.940 17 C 0.044 3.956 18 C 0.454 3.546 19 O -0.558 6.558 20 N -0.592 5.592 21 C -0.304 4.304 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.882 5.882 25 Si 0.879 3.121 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.270 1.270 29 H 0.016 0.984 30 H 0.096 0.904 31 H 0.063 0.937 32 H 0.034 0.966 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.058 0.942 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.183 0.817 44 H 0.176 0.824 45 H 0.048 0.952 46 H 0.088 0.912 47 H 0.370 0.630 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.161 32.366 3.732 33.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.241 5.241 3 C -0.087 4.087 4 C -0.006 4.006 5 N -0.352 5.352 6 C -0.067 4.067 7 C 0.298 3.702 8 O -0.413 6.413 9 C -0.172 4.172 10 C -0.065 4.065 11 C -0.247 4.247 12 C -0.131 4.131 13 N -0.120 5.120 14 N -0.187 5.187 15 H 0.283 0.717 16 C -0.087 4.087 17 C -0.087 4.087 18 C 0.240 3.760 19 O -0.440 6.440 20 N -0.232 5.232 21 C -0.432 4.432 22 H 0.138 0.862 23 C -0.162 4.162 24 N -0.522 5.522 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.196 1.196 29 H 0.035 0.965 30 H 0.114 0.886 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.109 0.891 40 H 0.111 0.889 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.200 0.800 44 H 0.193 0.807 45 H 0.066 0.934 46 H 0.106 0.894 47 H 0.202 0.798 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.596 32.720 4.869 33.551 hybrid contribution 0.853 0.104 -2.597 2.735 sum 6.450 32.824 2.273 33.529 Atomic orbital electron populations 1.22593 0.86354 1.04377 0.99449 1.61527 1.09075 1.10993 1.42484 1.22430 0.99980 0.89092 0.97193 1.21474 1.00987 0.80115 0.97982 1.47913 1.16672 1.07841 1.62742 1.21841 0.83076 1.02571 0.99187 1.20821 0.85337 0.87055 0.77026 1.90725 1.19747 1.84795 1.46022 1.21718 1.00445 0.91362 1.03677 1.19607 0.96954 0.87448 1.02523 1.20164 1.09841 0.98779 0.95870 1.23892 0.98647 0.90520 1.00019 1.77348 1.16547 1.23398 0.94673 1.46325 1.45761 1.12123 1.14499 0.71730 1.22466 0.99473 0.86325 1.00462 1.21887 1.00633 0.93986 0.92218 1.19633 0.85030 0.86411 0.84965 1.90527 1.42541 1.79938 1.30949 1.42213 1.51135 1.08366 1.21469 1.19433 1.33750 0.80298 1.09761 0.86248 1.25028 0.97921 0.95137 0.98073 1.69624 1.45729 1.01130 1.35735 0.86678 0.80889 0.78699 0.83152 1.19637 1.20217 1.19560 0.96496 0.88572 0.91821 0.94756 0.91073 0.89453 0.89467 0.92346 0.90622 0.91046 0.89112 0.88908 0.90251 0.90584 0.79962 0.80663 0.93385 0.89390 0.79762 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 8.96 60.06 0.54 0.87 16 2 N -0.52 -8.47 4.50 -244.36 -1.10 -9.57 16 3 C 0.04 0.54 5.28 -3.82 -0.02 0.52 16 4 C 0.12 1.34 5.33 -4.04 -0.02 1.32 16 5 N -0.62 -5.64 2.87 -181.57 -0.52 -6.16 16 6 C 0.08 0.42 10.24 59.85 0.61 1.03 16 7 C 0.51 5.12 7.67 -10.99 -0.08 5.03 16 8 O -0.54 -7.58 15.56 5.55 0.09 -7.50 16 9 C -0.13 -0.83 4.23 -27.88 -0.12 -0.94 16 10 C -0.03 -0.18 4.99 -27.88 -0.14 -0.32 16 11 C -0.23 -1.53 5.35 -105.05 -0.56 -2.09 16 12 C 0.06 0.40 11.96 -17.36 -0.21 0.19 16 13 N -0.30 -2.48 12.70 30.63 0.39 -2.09 16 14 N -0.48 -2.69 7.36 30.45 0.22 -2.46 16 15 H 0.44 1.14 8.96 -182.61 -1.64 -0.50 16 16 C 0.06 0.31 11.90 -17.22 -0.21 0.11 16 17 C 0.04 0.76 5.45 -4.98 -0.03 0.73 16 18 C 0.45 10.38 7.47 -10.99 -0.08 10.30 16 19 O -0.56 -14.90 13.91 5.55 0.08 -14.82 16 20 N -0.59 -14.18 5.09 -10.97 -0.06 -14.23 16 21 C -0.30 -8.61 10.16 -14.93 -0.15 -8.76 16 22 H 0.12 3.86 7.39 -52.49 -0.39 3.48 16 23 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 24 N -0.88 -25.82 13.96 55.50 0.77 -25.04 16 25 Si 0.88 19.40 27.74 -169.99 -4.71 14.68 16 26 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 27 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 28 H -0.27 -5.45 6.52 56.52 0.37 -5.08 16 29 H 0.02 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.10 1.93 5.82 -51.93 -0.30 1.63 16 31 H 0.06 0.97 6.47 -51.93 -0.34 0.63 16 32 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 33 H 0.07 0.81 7.93 -51.93 -0.41 0.39 16 34 H 0.09 0.95 8.07 -51.93 -0.42 0.53 16 35 H 0.09 1.16 5.83 -51.93 -0.30 0.86 16 36 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 37 H 0.07 0.40 8.07 -51.93 -0.42 -0.02 16 38 H 0.07 0.26 6.44 -51.93 -0.33 -0.07 16 39 H 0.09 0.43 7.40 -51.93 -0.38 0.05 16 40 H 0.09 0.47 8.11 -51.93 -0.42 0.04 16 41 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 42 H 0.08 0.59 8.10 -51.93 -0.42 0.17 16 43 H 0.18 0.90 8.06 -52.49 -0.42 0.48 16 44 H 0.18 0.40 8.06 -52.48 -0.42 -0.03 16 45 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 46 H 0.09 1.30 7.93 -51.93 -0.41 0.89 16 47 H 0.37 7.78 5.76 -40.82 -0.24 7.55 16 48 H 0.27 7.37 8.31 -40.82 -0.34 7.04 16 LS Contribution 396.28 15.07 5.97 5.97 Total: -1.00 -37.10 396.28 -7.98 -45.08 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -8.55 Total: 7.12 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: -0.56 Total: 9.03 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: -0.29 Total: -59.56 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: 0.16 Total: -22.32 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -4.71 Total: 14.68 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -37.10 -7.98 -45.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496796353.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.654 kcal (2) G-P(sol) polarization free energy of solvation -37.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds