Wall clock time and date at job start Tue Mar 31 2020 21:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46906 * 110.99568 * 2 1 4 4 C 1.52996 * 109.46878 * 66.04845 * 3 2 1 5 5 N 1.46504 * 109.46878 * 179.97438 * 4 3 2 6 6 C 1.46500 * 120.00028 * 270.00036 * 5 4 3 7 7 C 1.34776 * 120.00102 * 89.99982 * 5 4 3 8 8 O 1.21284 * 119.99993 * 0.02562 * 7 5 4 9 9 C 1.50698 * 120.00297 * 179.97438 * 7 5 4 10 10 C 1.52998 * 109.47192 * 180.02562 * 9 7 5 11 11 C 1.50698 * 109.47192 * 179.97438 * 10 9 7 12 12 C 1.39874 * 126.04031 * 269.99886 * 11 10 9 13 13 N 1.30836 * 108.20052 * 179.73886 * 12 11 10 14 14 N 1.40084 * 108.20904 * 0.40640 * 13 12 11 15 15 H 0.97001 * 126.04219 * 179.85882 * 14 13 12 16 16 C 1.34947 * 107.92164 * 359.58781 * 14 13 12 17 17 C 1.46904 * 111.00063 * 236.04829 * 2 1 3 18 18 C 1.50695 * 109.47203 * 293.95516 * 17 2 1 19 19 O 1.21294 * 119.99861 * 359.97438 * 18 17 2 20 20 N 1.34775 * 119.99902 * 180.02562 * 18 17 2 21 21 C 1.37104 * 119.99707 * 179.97438 * 20 18 17 22 22 H 1.07995 * 119.99889 * 0.02562 * 21 20 18 23 23 C 1.38946 * 119.99629 * 180.02562 * 21 20 18 24 24 N 1.31413 * 119.99638 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 120.00264 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.47183 * 90.00190 * 25 23 21 27 27 H 1.48504 * 109.47091 * 209.99949 * 25 23 21 28 28 H 1.48501 * 109.47248 * 329.99967 * 25 23 21 29 29 H 1.09004 * 109.47538 * 59.99692 * 1 2 3 30 30 H 1.08997 * 109.46790 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47425 * 299.99797 * 1 2 3 32 32 H 1.08994 * 109.47354 * 306.04694 * 3 2 1 33 33 H 1.09005 * 109.46778 * 186.04311 * 3 2 1 34 34 H 1.09003 * 109.47095 * 60.00065 * 4 3 2 35 35 H 1.08999 * 109.47629 * 299.99494 * 4 3 2 36 36 H 1.09007 * 109.47081 * 269.99884 * 6 5 4 37 37 H 1.08997 * 109.47304 * 30.00160 * 6 5 4 38 38 H 1.09003 * 109.47358 * 150.00368 * 6 5 4 39 39 H 1.08994 * 109.46963 * 59.99584 * 9 7 5 40 40 H 1.09004 * 109.46771 * 299.99960 * 9 7 5 41 41 H 1.09007 * 109.47384 * 60.00098 * 10 9 7 42 42 H 1.09002 * 109.46954 * 300.00115 * 10 9 7 43 43 H 1.08001 * 125.89534 * 0.02562 * 12 11 10 44 44 H 1.08006 * 126.12506 * 180.22115 * 16 14 13 45 45 H 1.09004 * 109.46647 * 53.95159 * 17 2 1 46 46 H 1.09004 * 109.46896 * 173.94863 * 17 2 1 47 47 H 0.96992 * 120.00281 * 359.97438 * 20 18 17 48 48 H 0.96999 * 119.99518 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6313 2.0574 1.3183 5 7 2.1568 3.4250 1.3185 6 6 3.5017 3.6928 1.8339 7 6 1.4029 4.4367 0.8446 8 8 0.2892 4.2150 0.4184 9 6 1.9431 5.8435 0.8454 10 6 0.8953 6.7925 0.2602 11 6 1.4353 8.1994 0.2615 12 6 1.3011 9.1314 1.2958 13 7 1.9043 10.2343 0.9330 14 7 2.4342 10.0418 -0.3494 15 1 2.9314 10.6955 -0.8655 16 6 2.1357 8.7843 -0.7376 17 6 1.9955 -0.7660 -1.1376 18 6 1.6369 -2.2203 -0.9730 19 8 1.0054 -2.5832 -0.0031 20 7 2.0189 -3.1180 -1.9029 21 6 1.6932 -4.4413 -1.7528 22 1 1.1302 -4.7642 -0.8897 23 6 2.0875 -5.3668 -2.7113 24 7 1.7748 -6.6351 -2.5677 25 14 3.0619 -4.8082 -4.2039 26 1 4.5140 -4.8754 -3.9005 27 1 2.7552 -5.6946 -5.3553 28 1 2.6911 -3.4107 -4.5425 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.5610 1.9274 -0.8308 33 1 3.0797 1.3445 -0.1082 34 1 2.0658 1.5015 2.1492 35 1 0.5471 2.0845 1.4266 36 1 3.4457 3.9088 2.9008 37 1 4.1333 2.8192 1.6727 38 1 3.9270 4.5499 1.3116 39 1 2.8493 5.8850 0.2412 40 1 2.1739 6.1435 1.8676 41 1 -0.0107 6.7509 0.8648 42 1 0.6641 6.4926 -0.7620 43 1 0.7919 8.9672 2.2340 44 1 2.4070 8.3268 -1.6777 45 1 1.5610 -0.3871 -2.0628 46 1 3.0798 -0.6610 -1.1757 47 1 2.5243 -2.8279 -2.6783 48 1 2.0504 -7.2812 -3.2366 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496796353.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:29 Heat of formation + Delta-G solvation = -9.999358 kcal Electronic energy + Delta-G solvation = -28139.011887 eV Core-core repulsion = 24037.105821 eV Total energy + Delta-G solvation = -4101.906066 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.06965 -40.95901 -40.42642 -38.16987 -36.43557 -35.84387 -34.93029 -33.74328 -32.23601 -31.47032 -29.90206 -29.14713 -27.63028 -26.93207 -25.84734 -24.31943 -22.88046 -22.26135 -21.25269 -20.84991 -20.21433 -19.88675 -18.73458 -17.93502 -17.73961 -17.31087 -16.89313 -16.63342 -16.52927 -15.92247 -15.62227 -15.52017 -15.34601 -15.21797 -14.94702 -14.65906 -14.43713 -14.28485 -14.04645 -13.82240 -13.69249 -13.53046 -13.32931 -13.24160 -13.09086 -12.99878 -12.72020 -12.59106 -12.53005 -12.39562 -11.99504 -11.96863 -11.80488 -11.46027 -11.44394 -10.79214 -10.56986 -10.40077 -10.22016 -9.64965 -9.38382 -9.27052 -8.39726 -6.00431 1.02376 1.31113 1.36506 1.45328 1.70136 1.79580 1.96919 2.05045 2.14084 2.24287 2.72580 3.15644 3.27937 3.64083 3.92595 4.00475 4.09473 4.10544 4.14957 4.29167 4.30867 4.36003 4.41744 4.43258 4.51208 4.58536 4.62372 4.65525 4.71633 4.77789 4.82339 4.87965 4.95255 4.97790 5.06045 5.18681 5.31143 5.38885 5.52061 5.55523 5.74152 5.87709 5.98974 6.13535 6.47528 6.49156 6.61412 6.75994 6.90101 7.25728 7.41360 7.98824 8.77944 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023868 B = 0.001685 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.832743 B =16616.380124 C =17151.220663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.533 5.533 3 C 0.052 3.948 4 C 0.121 3.879 5 N -0.615 5.615 6 C 0.070 3.930 7 C 0.503 3.497 8 O -0.586 6.586 9 C -0.120 4.120 10 C -0.018 4.018 11 C -0.250 4.250 12 C 0.047 3.953 13 N -0.336 5.336 14 N -0.474 5.474 15 H 0.451 0.549 16 C 0.072 3.928 17 C 0.055 3.945 18 C 0.452 3.548 19 O -0.604 6.604 20 N -0.592 5.592 21 C -0.328 4.328 22 H 0.055 0.945 23 C -0.015 4.015 24 N -0.935 5.935 25 Si 0.965 3.035 26 H -0.255 1.255 27 H -0.276 1.276 28 H -0.233 1.233 29 H 0.023 0.977 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.028 0.972 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.096 0.904 39 H 0.116 0.884 40 H 0.110 0.890 41 H 0.061 0.939 42 H 0.066 0.934 43 H 0.194 0.806 44 H 0.208 0.792 45 H 0.072 0.928 46 H 0.126 0.874 47 H 0.389 0.611 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.414 35.447 1.745 36.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.258 5.258 3 C -0.076 4.076 4 C -0.003 4.003 5 N -0.348 5.348 6 C -0.072 4.072 7 C 0.294 3.706 8 O -0.466 6.466 9 C -0.159 4.159 10 C -0.058 4.058 11 C -0.261 4.261 12 C -0.139 4.139 13 N -0.159 5.159 14 N -0.183 5.183 15 H 0.297 0.703 16 C -0.076 4.076 17 C -0.076 4.076 18 C 0.240 3.760 19 O -0.488 6.488 20 N -0.234 5.234 21 C -0.457 4.457 22 H 0.073 0.927 23 C -0.213 4.213 24 N -0.576 5.576 25 Si 0.785 3.215 26 H -0.179 1.179 27 H -0.201 1.201 28 H -0.156 1.156 29 H 0.042 0.958 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.046 0.954 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.114 0.886 39 H 0.134 0.866 40 H 0.128 0.872 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.211 0.789 44 H 0.224 0.776 45 H 0.090 0.910 46 H 0.143 0.857 47 H 0.225 0.775 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.891 35.857 2.906 37.057 hybrid contribution -0.226 -0.862 -1.850 2.054 sum 8.664 34.995 1.056 36.067 Atomic orbital electron populations 1.22402 0.87286 1.01931 1.00334 1.61475 1.08492 1.13295 1.42505 1.22431 1.01052 0.86637 0.97506 1.21273 0.99733 0.81662 0.97607 1.48004 1.17971 1.06572 1.62254 1.22114 0.81015 1.03909 1.00121 1.21520 0.84710 0.88448 0.75967 1.90707 1.21979 1.85627 1.48328 1.21709 1.00716 0.88379 1.05120 1.19453 0.96642 0.88030 1.01628 1.20149 1.11004 0.98525 0.96429 1.24186 0.98440 0.90460 1.00784 1.77297 1.17984 1.24317 0.96253 1.46378 1.45388 1.12697 1.13871 0.70336 1.22948 0.97902 0.85806 1.00961 1.21838 1.02952 0.89346 0.93449 1.20835 0.82969 0.88726 0.83507 1.90519 1.44083 1.81391 1.32822 1.42026 1.51883 1.06790 1.22697 1.19005 1.34803 0.83049 1.08817 0.92652 1.26105 0.98676 0.94650 1.01917 1.69809 1.47211 1.03000 1.37537 0.85366 0.79120 0.80021 0.77013 1.17916 1.20125 1.15641 0.95828 0.92457 0.90852 0.95374 0.88599 0.88909 0.91997 0.91246 0.90011 0.88584 0.86625 0.87202 0.91977 0.91543 0.78900 0.77567 0.91018 0.85661 0.77541 0.91187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.97 8.96 127.69 1.14 2.12 16 2 N -0.53 -16.68 4.50 -927.03 -4.17 -20.85 16 3 C 0.05 1.20 5.28 86.30 0.46 1.66 16 4 C 0.12 2.58 5.33 86.38 0.46 3.04 16 5 N -0.62 -9.74 2.87 -846.75 -2.43 -12.17 16 6 C 0.07 0.50 10.24 127.77 1.31 1.81 16 7 C 0.50 9.25 7.67 87.66 0.67 9.92 16 8 O -0.59 -16.48 15.56 -3.04 -0.05 -16.52 16 9 C -0.12 -1.17 4.23 29.85 0.13 -1.05 16 10 C -0.02 -0.23 4.99 29.85 0.15 -0.08 16 11 C -0.25 -2.78 5.35 -20.14 -0.11 -2.89 16 12 C 0.05 0.62 11.96 85.24 1.02 1.64 16 13 N -0.34 -5.22 12.70 -57.02 -0.72 -5.94 16 14 N -0.47 -4.35 7.36 -57.59 -0.42 -4.77 16 15 H 0.45 1.41 8.96 -213.33 -1.91 -0.50 16 16 C 0.07 0.55 11.90 83.54 0.99 1.54 16 17 C 0.06 1.75 5.45 85.55 0.47 2.22 16 18 C 0.45 20.65 7.47 87.66 0.66 21.31 16 19 O -0.60 -33.68 13.91 -3.07 -0.04 -33.72 16 20 N -0.59 -28.09 5.09 -306.99 -1.56 -29.66 16 21 C -0.33 -19.29 10.16 84.04 0.85 -18.44 16 22 H 0.06 3.88 7.39 -2.91 -0.02 3.86 16 23 C -0.02 -0.83 5.50 84.93 0.47 -0.37 16 24 N -0.93 -56.56 13.96 21.66 0.30 -56.26 16 25 Si 0.96 38.73 27.74 68.60 1.90 40.64 16 26 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 27 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 28 H -0.23 -7.90 6.52 99.48 0.65 -7.25 16 29 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.06 2.40 5.82 -2.39 -0.01 2.39 16 31 H 0.07 2.29 6.47 -2.39 -0.02 2.28 16 32 H 0.03 0.70 8.12 -2.39 -0.02 0.68 16 33 H 0.10 1.75 7.93 -2.38 -0.02 1.73 16 34 H 0.09 1.86 8.07 -2.39 -0.02 1.85 16 35 H 0.06 1.65 5.83 -2.39 -0.01 1.63 16 36 H 0.07 0.38 8.14 -2.38 -0.02 0.36 16 37 H 0.08 0.53 8.07 -2.39 -0.02 0.51 16 38 H 0.10 0.24 6.44 -2.39 -0.02 0.22 16 39 H 0.12 0.60 7.40 -2.39 -0.02 0.58 16 40 H 0.11 0.75 8.11 -2.39 -0.02 0.73 16 41 H 0.06 0.98 8.10 -2.38 -0.02 0.96 16 42 H 0.07 0.95 8.10 -2.39 -0.02 0.93 16 43 H 0.19 1.78 8.06 -2.91 -0.02 1.76 16 44 H 0.21 0.12 8.06 -2.91 -0.02 0.10 16 45 H 0.07 2.00 8.12 -2.39 -0.02 1.98 16 46 H 0.13 3.10 7.93 -2.39 -0.02 3.08 16 47 H 0.39 15.24 5.76 -92.71 -0.53 14.70 16 48 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -88.10 396.28 -0.05 -88.15 By element: Atomic # 1 Polarization: 30.19 SS G_CDS: -1.51 Total: 28.68 kcal Atomic # 6 Polarization: 13.78 SS G_CDS: 8.67 Total: 22.44 kcal Atomic # 7 Polarization: -120.64 SS G_CDS: -9.01 Total: -129.65 kcal Atomic # 8 Polarization: -50.16 SS G_CDS: -0.09 Total: -50.25 kcal Atomic # 14 Polarization: 38.73 SS G_CDS: 1.90 Total: 40.64 kcal Total: -88.10 -0.05 -88.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496796353.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.147 kcal (2) G-P(sol) polarization free energy of solvation -88.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds