Wall clock time and date at job start Tue Mar 31 2020 21:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.37357 * 125.83731 * 2 1 4 4 N 1.29397 * 108.83459 * 180.02562 * 3 2 1 5 5 N 1.40165 * 108.13942 * 359.97438 * 4 3 2 6 6 C 1.46501 * 126.34945 * 180.26779 * 5 4 3 7 7 C 1.50703 * 109.47160 * 269.69043 * 6 5 4 8 8 O 1.21287 * 119.99931 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00199 * 179.97438 * 7 6 5 10 10 C 1.46501 * 120.00026 * 179.97438 * 9 7 6 11 11 H 1.08995 * 109.47498 * 325.00530 * 10 9 7 12 12 C 1.53001 * 109.46916 * 85.00860 * 10 9 7 13 13 C 1.52998 * 109.47055 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47259 * 299.99505 * 13 12 10 15 15 C 1.53002 * 109.47129 * 59.99768 * 14 13 12 16 16 C 1.53000 * 109.47525 * 300.00490 * 15 14 13 17 17 H 1.09003 * 109.46777 * 299.99841 * 16 15 14 18 18 C 1.52993 * 109.47369 * 179.97438 * 16 15 14 19 19 N 1.46501 * 109.46914 * 64.99874 * 18 16 15 20 20 C 1.36939 * 119.99944 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00215 * 0.02562 * 20 19 18 22 22 C 1.38811 * 120.00263 * 179.97438 * 20 19 18 23 23 N 1.31625 * 119.99510 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00364 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46656 * 60.00310 * 24 22 20 26 26 H 1.48493 * 109.47091 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47145 * 300.00520 * 24 22 20 28 28 C 1.34817 * 125.83270 * 180.02562 * 2 1 3 29 29 O 1.21816 * 126.30186 * 359.97438 * 28 2 1 30 30 H 1.09001 * 109.46895 * 269.97510 * 1 2 3 31 31 H 1.09001 * 109.46960 * 29.97771 * 1 2 3 32 32 H 1.09000 * 109.47205 * 149.97468 * 1 2 3 33 33 H 1.08001 * 125.58218 * 359.97438 * 3 2 1 34 34 H 1.09004 * 109.47090 * 29.68707 * 6 5 4 35 35 H 1.08999 * 109.47404 * 149.68930 * 6 5 4 36 36 H 0.97006 * 119.99681 * 0.02562 * 9 7 6 37 37 H 1.09009 * 109.46483 * 299.99605 * 12 10 9 38 38 H 1.08995 * 109.47306 * 59.99552 * 12 10 9 39 39 H 1.09003 * 109.47170 * 179.97438 * 13 12 10 40 40 H 1.09003 * 109.47121 * 59.99465 * 13 12 10 41 41 H 1.08995 * 109.47053 * 300.00352 * 14 13 12 42 42 H 1.08998 * 109.47580 * 180.02562 * 14 13 12 43 43 H 1.08997 * 109.47295 * 180.02562 * 15 14 13 44 44 H 1.09003 * 109.46963 * 60.00217 * 15 14 13 45 45 H 1.09001 * 109.47342 * 184.99489 * 18 16 15 46 46 H 1.09003 * 109.47056 * 304.99951 * 18 16 15 47 47 H 0.96998 * 120.00158 * 359.97438 * 19 18 16 48 48 H 0.97003 * 119.99520 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2692 1.1135 0.0000 4 7 3.5066 0.7352 -0.0005 5 7 3.5344 -0.6662 -0.0003 6 6 4.7313 -1.5110 0.0047 7 6 5.1432 -1.8070 -1.4144 8 8 4.5000 -1.3571 -2.3389 9 7 6.2264 -2.5717 -1.6561 10 6 6.6265 -2.8599 -3.0356 11 1 5.7377 -2.9572 -3.6590 12 6 7.4971 -1.7178 -3.5633 13 6 7.9155 -2.0191 -5.0038 14 6 8.7107 -3.3256 -5.0413 15 6 7.8402 -4.4678 -4.5135 16 6 7.4217 -4.1666 -3.0730 17 1 8.3104 -4.0690 -2.4494 18 6 6.5507 -5.3084 -2.5455 19 7 7.3478 -6.5353 -2.4691 20 6 6.7762 -7.6963 -2.0210 21 1 5.7378 -7.7076 -1.7244 22 6 7.5312 -8.8589 -1.9491 23 7 8.7966 -8.8452 -2.3111 24 14 6.7514 -10.4428 -1.3386 25 1 5.6147 -10.8073 -2.2220 26 1 7.7616 -11.5309 -1.3567 27 1 6.2579 -10.2490 0.0485 28 6 2.2542 -1.0930 -0.0005 29 8 1.8805 -2.2524 -0.0006 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3633 -0.8897 -0.5142 33 1 1.9250 2.1373 -0.0004 34 1 5.5408 -0.9910 0.5171 35 1 4.5145 -2.4453 0.5225 36 1 6.7406 -2.9319 -0.9166 37 1 6.9306 -0.7869 -3.5362 38 1 8.3859 -1.6206 -2.9399 39 1 8.5354 -1.2052 -5.3799 40 1 7.0268 -2.1166 -5.6274 41 1 9.5993 -3.2281 -4.4176 42 1 9.0092 -3.5401 -6.0674 43 1 8.4069 -5.3986 -4.5398 44 1 6.9515 -4.5654 -5.1371 45 1 6.1798 -5.0537 -1.5527 46 1 5.7082 -5.4639 -3.2194 47 1 8.2803 -6.5253 -2.7358 48 1 9.3243 -9.6576 -2.2604 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498488482.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:43 Heat of formation + Delta-G solvation = 12.925989 kcal Electronic energy + Delta-G solvation = -29755.593227 eV Core-core repulsion = 25654.681278 eV Total energy + Delta-G solvation = -4100.911949 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.59379 -40.07613 -38.22095 -37.37633 -35.43732 -34.59395 -34.12343 -32.13657 -31.85714 -29.80994 -29.48898 -28.27748 -26.92912 -25.16194 -23.28068 -22.94109 -22.20910 -21.43082 -20.63223 -20.41546 -19.68754 -17.95984 -17.62875 -17.10116 -16.42147 -16.40119 -16.08794 -15.71149 -15.09397 -14.89658 -14.64405 -14.43774 -14.25636 -13.94258 -13.72827 -13.50992 -13.30517 -13.09346 -13.03590 -12.72222 -12.64527 -12.57232 -12.25507 -12.07271 -11.80440 -11.50981 -11.08173 -10.85947 -10.85683 -10.71587 -10.69143 -10.43513 -10.33985 -10.22578 -10.08828 -9.95095 -9.70546 -9.60064 -8.92382 -8.80932 -8.72582 -6.88947 -5.74311 -3.02349 1.45901 1.73804 2.51270 2.59121 2.84310 3.27579 3.46782 3.50821 3.52319 4.16711 4.45325 4.58089 4.63478 4.68237 4.84853 4.87384 4.94383 4.94857 5.08344 5.14344 5.16813 5.27218 5.38249 5.58367 5.59353 5.61750 5.65224 5.69464 5.76558 5.85336 5.90729 6.12960 6.16291 6.22747 6.26728 6.27857 6.30869 6.41511 6.55877 6.59142 6.71406 6.81576 6.94051 7.39125 7.51080 7.73475 7.87892 8.20971 8.45101 9.56339 10.13884 10.49001 11.48529 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010288 B = 0.003007 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2720.974894 B = 9307.834584 C =11535.691647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.562 5.562 3 C 0.254 3.746 4 N -0.274 5.274 5 N -0.436 5.436 6 C 0.141 3.859 7 C 0.499 3.501 8 O -0.531 6.531 9 N -0.716 5.716 10 C 0.156 3.844 11 H 0.086 0.914 12 C -0.125 4.125 13 C -0.115 4.115 14 C -0.121 4.121 15 C -0.107 4.107 16 C -0.099 4.099 17 H 0.076 0.924 18 C 0.158 3.842 19 N -0.730 5.730 20 C -0.238 4.238 21 H 0.069 0.931 22 C -0.014 4.014 23 N -0.935 5.935 24 Si 0.906 3.094 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 C 0.651 3.349 29 O -0.547 6.547 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.230 0.770 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.404 0.596 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.080 0.920 44 H 0.060 0.940 45 H 0.019 0.981 46 H 0.018 0.982 47 H 0.384 0.616 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.262 25.081 3.664 26.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.292 5.292 3 C -0.046 4.046 4 N -0.095 5.095 5 N -0.256 5.256 6 C 0.016 3.984 7 C 0.283 3.717 8 O -0.406 6.406 9 N -0.367 5.367 10 C 0.051 3.949 11 H 0.104 0.896 12 C -0.163 4.163 13 C -0.153 4.153 14 C -0.159 4.159 15 C -0.145 4.145 16 C -0.118 4.118 17 H 0.094 0.906 18 C 0.031 3.969 19 N -0.375 5.375 20 C -0.369 4.369 21 H 0.087 0.913 22 C -0.210 4.210 23 N -0.584 5.584 24 Si 0.738 3.262 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 C 0.350 3.650 29 O -0.419 6.419 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.247 0.753 34 H 0.143 0.857 35 H 0.145 0.855 36 H 0.238 0.762 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.098 0.902 44 H 0.079 0.921 45 H 0.037 0.963 46 H 0.036 0.964 47 H 0.218 0.782 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.105 24.680 3.061 26.483 hybrid contribution -0.608 -1.257 0.566 1.507 sum -9.713 23.423 3.627 25.615 Atomic orbital electron populations 1.21815 0.74160 1.04825 1.03425 1.45852 1.08851 1.06640 1.67830 1.25881 0.85812 0.94725 0.98159 1.76948 1.18279 0.91594 1.22665 1.48163 1.05463 1.03042 1.68977 1.21256 0.85759 0.95499 0.95900 1.20804 0.80707 0.78826 0.91393 1.90714 1.53221 1.51201 1.45511 1.46008 1.29156 1.51873 1.09670 1.21019 0.97963 0.94082 0.81824 0.89553 1.21882 0.99477 0.98287 0.96699 1.21484 1.00058 0.97607 0.96124 1.21595 0.98568 0.94714 1.00985 1.21495 0.99868 0.98631 0.94517 1.21595 0.98801 0.93436 0.98017 0.90605 1.20667 0.93221 0.86053 0.97006 1.42350 1.11279 1.04724 1.79117 1.19193 0.95108 0.87274 1.35344 0.91342 1.24715 0.95949 0.97910 1.02381 1.69650 1.06673 1.27734 1.54311 0.86275 0.77959 0.83351 0.78665 1.21296 1.21719 1.21287 1.16670 0.81937 0.85102 0.81241 1.91124 1.77516 1.15199 1.58096 0.90874 0.89351 0.89366 0.75344 0.85693 0.85526 0.76161 0.91905 0.91828 0.92172 0.91984 0.91991 0.92103 0.90183 0.92084 0.96313 0.96434 0.78231 0.93526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.54 11.05 59.84 0.66 1.20 16 2 N -0.56 -5.38 3.14 -130.11 -0.41 -5.79 16 3 C 0.25 1.86 12.66 -89.12 -1.13 0.74 16 4 N -0.27 -3.00 12.53 29.87 0.37 -2.63 16 5 N -0.44 -5.71 3.11 -66.30 -0.21 -5.92 16 6 C 0.14 1.60 6.87 -5.19 -0.04 1.57 16 7 C 0.50 7.10 7.86 -10.98 -0.09 7.02 16 8 O -0.53 -9.68 16.09 5.55 0.09 -9.59 16 9 N -0.72 -9.22 4.30 -53.80 -0.23 -9.45 16 10 C 0.16 2.21 1.90 -67.93 -0.13 2.09 16 11 H 0.09 1.44 7.58 -51.93 -0.39 1.05 16 12 C -0.12 -1.55 5.49 -26.73 -0.15 -1.70 16 13 C -0.11 -1.35 5.92 -26.73 -0.16 -1.51 16 14 C -0.12 -1.53 5.92 -26.73 -0.16 -1.69 16 15 C -0.11 -1.66 5.08 -26.73 -0.14 -1.80 16 16 C -0.10 -1.56 1.80 -90.62 -0.16 -1.73 16 17 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 18 C 0.16 3.21 5.56 -4.04 -0.02 3.18 16 19 N -0.73 -18.35 5.33 -59.91 -0.32 -18.67 16 20 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 21 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 22 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 23 N -0.93 -28.26 13.06 55.49 0.72 -27.53 16 24 Si 0.91 22.78 29.55 -169.99 -5.02 17.76 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 28 C 0.65 9.39 8.60 -86.73 -0.75 8.64 16 29 O -0.55 -9.95 17.72 5.09 0.09 -9.86 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 32 H 0.09 0.62 8.08 -51.93 -0.42 0.20 16 33 H 0.23 0.32 8.06 -52.49 -0.42 -0.10 16 34 H 0.13 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.13 1.33 8.11 -51.93 -0.42 0.91 16 36 H 0.40 4.35 8.39 -40.82 -0.34 4.01 16 37 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.08 1.44 7.18 -51.93 -0.37 1.06 16 44 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.02 0.38 7.30 -51.93 -0.38 0.00 16 46 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.38 10.01 6.85 -40.82 -0.28 9.73 16 48 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 395.76 15.07 5.96 5.96 Total: -1.00 -39.50 395.76 -9.09 -48.59 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -7.65 Total: 8.51 kcal Atomic # 6 Polarization: 11.11 SS G_CDS: -2.50 Total: 8.62 kcal Atomic # 7 Polarization: -69.92 SS G_CDS: -0.07 Total: -69.99 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: 0.18 Total: -19.45 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -39.50 -9.09 -48.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498488482.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.518 kcal (2) G-P(sol) polarization free energy of solvation -39.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds