Wall clock time and date at job start Tue Mar 31 2020 21:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.37357 * 125.83731 * 2 1 4 4 N 1.29397 * 108.83459 * 180.02562 * 3 2 1 5 5 N 1.40165 * 108.13942 * 359.97438 * 4 3 2 6 6 C 1.46501 * 126.34945 * 180.26779 * 5 4 3 7 7 C 1.50703 * 109.47160 * 269.69043 * 6 5 4 8 8 O 1.21287 * 119.99931 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00199 * 179.97438 * 7 6 5 10 10 C 1.46501 * 120.00026 * 179.97438 * 9 7 6 11 11 H 1.08995 * 109.47498 * 325.00530 * 10 9 7 12 12 C 1.53001 * 109.46916 * 85.00860 * 10 9 7 13 13 C 1.52998 * 109.47055 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47259 * 299.99505 * 13 12 10 15 15 C 1.53002 * 109.47129 * 59.99768 * 14 13 12 16 16 C 1.53000 * 109.47525 * 300.00490 * 15 14 13 17 17 H 1.09003 * 109.46777 * 299.99841 * 16 15 14 18 18 C 1.52993 * 109.47369 * 179.97438 * 16 15 14 19 19 N 1.46501 * 109.46914 * 64.99874 * 18 16 15 20 20 C 1.36939 * 119.99944 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00215 * 0.02562 * 20 19 18 22 22 C 1.38811 * 120.00263 * 179.97438 * 20 19 18 23 23 N 1.31625 * 119.99510 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00364 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46656 * 60.00310 * 24 22 20 26 26 H 1.48493 * 109.47091 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47145 * 300.00520 * 24 22 20 28 28 C 1.34817 * 125.83270 * 180.02562 * 2 1 3 29 29 O 1.21816 * 126.30186 * 359.97438 * 28 2 1 30 30 H 1.09001 * 109.46895 * 269.97510 * 1 2 3 31 31 H 1.09001 * 109.46960 * 29.97771 * 1 2 3 32 32 H 1.09000 * 109.47205 * 149.97468 * 1 2 3 33 33 H 1.08001 * 125.58218 * 359.97438 * 3 2 1 34 34 H 1.09004 * 109.47090 * 29.68707 * 6 5 4 35 35 H 1.08999 * 109.47404 * 149.68930 * 6 5 4 36 36 H 0.97006 * 119.99681 * 0.02562 * 9 7 6 37 37 H 1.09009 * 109.46483 * 299.99605 * 12 10 9 38 38 H 1.08995 * 109.47306 * 59.99552 * 12 10 9 39 39 H 1.09003 * 109.47170 * 179.97438 * 13 12 10 40 40 H 1.09003 * 109.47121 * 59.99465 * 13 12 10 41 41 H 1.08995 * 109.47053 * 300.00352 * 14 13 12 42 42 H 1.08998 * 109.47580 * 180.02562 * 14 13 12 43 43 H 1.08997 * 109.47295 * 180.02562 * 15 14 13 44 44 H 1.09003 * 109.46963 * 60.00217 * 15 14 13 45 45 H 1.09001 * 109.47342 * 184.99489 * 18 16 15 46 46 H 1.09003 * 109.47056 * 304.99951 * 18 16 15 47 47 H 0.96998 * 120.00158 * 359.97438 * 19 18 16 48 48 H 0.97003 * 119.99520 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2692 1.1135 0.0000 4 7 3.5066 0.7352 -0.0005 5 7 3.5344 -0.6662 -0.0003 6 6 4.7313 -1.5110 0.0047 7 6 5.1432 -1.8070 -1.4144 8 8 4.5000 -1.3571 -2.3389 9 7 6.2264 -2.5717 -1.6561 10 6 6.6265 -2.8599 -3.0356 11 1 5.7377 -2.9572 -3.6590 12 6 7.4971 -1.7178 -3.5633 13 6 7.9155 -2.0191 -5.0038 14 6 8.7107 -3.3256 -5.0413 15 6 7.8402 -4.4678 -4.5135 16 6 7.4217 -4.1666 -3.0730 17 1 8.3104 -4.0690 -2.4494 18 6 6.5507 -5.3084 -2.5455 19 7 7.3478 -6.5353 -2.4691 20 6 6.7762 -7.6963 -2.0210 21 1 5.7378 -7.7076 -1.7244 22 6 7.5312 -8.8589 -1.9491 23 7 8.7966 -8.8452 -2.3111 24 14 6.7514 -10.4428 -1.3386 25 1 5.6147 -10.8073 -2.2220 26 1 7.7616 -11.5309 -1.3567 27 1 6.2579 -10.2490 0.0485 28 6 2.2542 -1.0930 -0.0005 29 8 1.8805 -2.2524 -0.0006 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3633 -0.8897 -0.5142 33 1 1.9250 2.1373 -0.0004 34 1 5.5408 -0.9910 0.5171 35 1 4.5145 -2.4453 0.5225 36 1 6.7406 -2.9319 -0.9166 37 1 6.9306 -0.7869 -3.5362 38 1 8.3859 -1.6206 -2.9399 39 1 8.5354 -1.2052 -5.3799 40 1 7.0268 -2.1166 -5.6274 41 1 9.5993 -3.2281 -4.4176 42 1 9.0092 -3.5401 -6.0674 43 1 8.4069 -5.3986 -4.5398 44 1 6.9515 -4.5654 -5.1371 45 1 6.1798 -5.0537 -1.5527 46 1 5.7082 -5.4639 -3.2194 47 1 8.2803 -6.5253 -2.7358 48 1 9.3243 -9.6576 -2.2604 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498488482.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:41 Heat of formation + Delta-G solvation = -14.693235 kcal Electronic energy + Delta-G solvation = -29756.790886 eV Core-core repulsion = 25654.681278 eV Total energy + Delta-G solvation = -4102.109608 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.42106 -41.25419 -39.44552 -38.44493 -36.46928 -36.20961 -35.28754 -33.71421 -32.94915 -31.24299 -30.82084 -29.14919 -27.68083 -26.87435 -24.75349 -24.12237 -23.22790 -22.37514 -22.02571 -21.54680 -20.84616 -19.35734 -18.70503 -18.53424 -17.40923 -17.37204 -17.02959 -16.76028 -16.69612 -16.08451 -15.87830 -15.55539 -15.43530 -15.27399 -15.06020 -14.79549 -14.63493 -14.33963 -14.15280 -13.75025 -13.58211 -13.48554 -13.38119 -13.28715 -12.94321 -12.92582 -12.74662 -12.70240 -12.24675 -12.14793 -11.95603 -11.87749 -11.68295 -11.45686 -11.44228 -11.33794 -11.16023 -10.95236 -10.70860 -10.06634 -9.66445 -9.00769 -7.97041 -5.25220 0.64970 1.08350 1.45205 1.47616 1.48135 1.54044 1.54147 2.08002 2.34000 2.53903 3.35811 3.45458 3.50348 3.64360 3.76983 3.91103 4.06269 4.07861 4.10609 4.13356 4.23951 4.35799 4.40736 4.43037 4.47704 4.50353 4.51528 4.55102 4.77749 4.82228 4.85799 4.87772 4.98150 5.02150 5.10263 5.13632 5.22417 5.27615 5.29109 5.41185 5.45157 5.47580 5.58127 5.68017 6.25520 6.44268 6.59877 6.91212 7.12636 7.32642 8.06973 8.33116 9.25800 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010288 B = 0.003007 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2720.974894 B = 9307.834584 C =11535.691647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.559 5.559 3 C 0.278 3.722 4 N -0.308 5.308 5 N -0.445 5.445 6 C 0.140 3.860 7 C 0.498 3.502 8 O -0.575 6.575 9 N -0.708 5.708 10 C 0.163 3.837 11 H 0.058 0.942 12 C -0.115 4.115 13 C -0.111 4.111 14 C -0.113 4.113 15 C -0.106 4.106 16 C -0.083 4.083 17 H 0.086 0.914 18 C 0.160 3.840 19 N -0.737 5.737 20 C -0.249 4.249 21 H 0.066 0.934 22 C -0.068 4.068 23 N -0.964 5.964 24 Si 0.970 3.030 25 H -0.283 1.283 26 H -0.291 1.291 27 H -0.278 1.278 28 C 0.628 3.372 29 O -0.603 6.603 30 H 0.090 0.910 31 H 0.132 0.868 32 H 0.064 0.936 33 H 0.291 0.709 34 H 0.163 0.837 35 H 0.130 0.870 36 H 0.415 0.585 37 H 0.057 0.943 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.054 0.946 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.052 0.948 44 H 0.049 0.951 45 H 0.023 0.977 46 H -0.002 1.002 47 H 0.378 0.622 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.409 27.727 4.451 29.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.287 5.287 3 C -0.019 4.019 4 N -0.129 5.129 5 N -0.263 5.263 6 C 0.015 3.985 7 C 0.283 3.717 8 O -0.454 6.454 9 N -0.360 5.360 10 C 0.058 3.942 11 H 0.076 0.924 12 C -0.154 4.154 13 C -0.149 4.149 14 C -0.150 4.150 15 C -0.144 4.144 16 C -0.103 4.103 17 H 0.104 0.896 18 C 0.033 3.967 19 N -0.380 5.380 20 C -0.381 4.381 21 H 0.084 0.916 22 C -0.261 4.261 23 N -0.615 5.615 24 Si 0.799 3.201 25 H -0.209 1.209 26 H -0.217 1.217 27 H -0.204 1.204 28 C 0.327 3.673 29 O -0.480 6.480 30 H 0.109 0.891 31 H 0.150 0.850 32 H 0.083 0.917 33 H 0.306 0.694 34 H 0.180 0.820 35 H 0.148 0.852 36 H 0.252 0.748 37 H 0.075 0.925 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.071 0.929 44 H 0.068 0.932 45 H 0.041 0.959 46 H 0.016 0.984 47 H 0.211 0.789 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.266 27.386 3.871 29.169 hybrid contribution -0.667 -1.996 0.309 2.127 sum -9.933 25.390 4.180 27.582 Atomic orbital electron populations 1.22167 0.71851 1.05838 1.04973 1.46113 1.10203 1.05956 1.66389 1.27146 0.84417 0.96094 0.94283 1.76968 1.20368 0.89999 1.25527 1.48345 1.05261 1.04262 1.68478 1.21420 0.86719 0.96397 0.93992 1.21331 0.80100 0.78016 0.92231 1.90684 1.54557 1.53067 1.47088 1.45946 1.29072 1.51397 1.09570 1.20835 0.96928 0.94091 0.82338 0.92386 1.21802 0.99437 0.96708 0.97403 1.21475 1.00036 0.97814 0.95559 1.21534 0.98187 0.93637 1.01639 1.21442 0.99693 0.98926 0.94331 1.21430 0.98322 0.92354 0.98166 0.89600 1.20757 0.93026 0.86049 0.96889 1.42466 1.11291 1.05484 1.78801 1.19519 0.95152 0.88620 1.34842 0.91583 1.25482 0.96536 1.00939 1.03169 1.69789 1.07810 1.28288 1.55588 0.85275 0.77056 0.79449 0.78361 1.20902 1.21661 1.20402 1.17130 0.83023 0.85519 0.81659 1.91055 1.78570 1.17608 1.60751 0.89107 0.84959 0.91699 0.69353 0.81961 0.85215 0.74764 0.92469 0.90067 0.89692 0.92756 0.90983 0.90986 0.92899 0.93184 0.95872 0.98439 0.78944 0.93851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.82 11.05 127.77 1.41 2.23 16 2 N -0.56 -9.87 3.14 -683.69 -2.15 -12.02 16 3 C 0.28 3.24 12.66 179.83 2.28 5.52 16 4 N -0.31 -6.18 12.53 -59.42 -0.74 -6.93 16 5 N -0.44 -11.51 3.11 -481.76 -1.50 -13.01 16 6 C 0.14 3.13 6.87 85.63 0.59 3.72 16 7 C 0.50 14.28 7.86 87.66 0.69 14.97 16 8 O -0.57 -21.50 16.09 -3.05 -0.05 -21.55 16 9 N -0.71 -18.07 4.30 -442.52 -1.90 -19.98 16 10 C 0.16 4.64 1.90 44.99 0.09 4.73 16 11 H 0.06 2.01 7.58 -2.39 -0.02 1.99 16 12 C -0.11 -2.68 5.49 30.59 0.17 -2.51 16 13 C -0.11 -2.40 5.92 30.59 0.18 -2.22 16 14 C -0.11 -2.67 5.92 30.59 0.18 -2.49 16 15 C -0.11 -3.33 5.08 30.59 0.16 -3.18 16 16 C -0.08 -2.65 1.80 -10.79 -0.02 -2.67 16 17 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 18 C 0.16 6.65 5.56 86.38 0.48 7.14 16 19 N -0.74 -37.95 5.33 -343.45 -1.83 -39.78 16 20 C -0.25 -14.38 9.99 84.03 0.84 -13.54 16 21 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 22 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 23 N -0.96 -59.04 13.06 21.65 0.28 -58.75 16 24 Si 0.97 47.20 29.55 68.60 2.03 49.23 16 25 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 26 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 27 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 28 C 0.63 18.38 8.60 178.99 1.54 19.92 16 29 O -0.60 -23.14 17.72 -4.72 -0.08 -23.22 16 30 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.13 0.01 8.14 -2.39 -0.02 -0.01 16 32 H 0.06 0.92 8.08 -2.39 -0.02 0.90 16 33 H 0.29 -0.79 8.06 -2.91 -0.02 -0.81 16 34 H 0.16 2.27 8.14 -2.38 -0.02 2.25 16 35 H 0.13 2.78 8.11 -2.39 -0.02 2.76 16 36 H 0.42 8.61 8.39 -92.70 -0.78 7.83 16 37 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 38 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.05 1.95 7.18 -2.39 -0.02 1.94 16 44 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.02 0.96 7.30 -2.39 -0.02 0.94 16 46 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 47 H 0.38 20.20 6.85 -92.71 -0.63 19.56 16 48 H 0.25 14.99 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -90.26 395.76 2.66 -87.60 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: -0.43 Total: 30.32 kcal Atomic # 6 Polarization: 19.05 SS G_CDS: 9.04 Total: 28.09 kcal Atomic # 7 Polarization: -142.62 SS G_CDS: -7.84 Total: -150.47 kcal Atomic # 8 Polarization: -44.64 SS G_CDS: -0.13 Total: -44.77 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.23 kcal Total: -90.26 2.66 -87.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498488482.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.908 kcal (2) G-P(sol) polarization free energy of solvation -90.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds