Wall clock time and date at job start Tue Mar 31 2020 21:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.37360 * 125.83348 * 2 1 4 4 N 1.29400 * 108.83054 * 179.77595 * 3 2 1 5 5 N 1.40172 * 108.13909 * 0.38304 * 4 3 2 6 6 C 1.46498 * 126.35074 * 179.88268 * 5 4 3 7 7 C 1.50701 * 109.47016 * 269.68714 * 6 5 4 8 8 O 1.21283 * 120.00236 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00314 * 179.97438 * 7 6 5 10 10 C 1.46503 * 120.00139 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.46913 * 35.00537 * 10 9 7 12 12 C 1.52997 * 109.47269 * 275.00485 * 10 9 7 13 13 C 1.53004 * 109.47236 * 299.99844 * 12 10 9 14 14 C 1.52997 * 109.47024 * 300.00477 * 13 12 10 15 15 C 1.52997 * 109.47504 * 59.99687 * 14 13 12 16 16 C 1.52997 * 109.46834 * 155.00103 * 10 9 7 17 17 H 1.09004 * 109.46881 * 179.97438 * 16 10 9 18 18 C 1.52997 * 109.47504 * 300.00238 * 16 10 9 19 19 N 1.46505 * 109.47212 * 184.99959 * 18 16 10 20 20 C 1.36936 * 119.99992 * 179.97438 * 19 18 16 21 21 H 1.08006 * 119.99834 * 0.02562 * 20 19 18 22 22 C 1.38801 * 120.00093 * 180.02562 * 20 19 18 23 23 N 1.31619 * 120.00176 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00265 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46951 * 89.99797 * 24 22 20 26 26 H 1.48500 * 109.47313 * 210.00112 * 24 22 20 27 27 H 1.48501 * 109.46991 * 330.00153 * 24 22 20 28 28 C 1.34818 * 125.83137 * 180.02562 * 2 1 3 29 29 O 1.21813 * 126.30341 * 359.97438 * 28 2 1 30 30 H 1.09001 * 109.47086 * 269.97321 * 1 2 3 31 31 H 1.08995 * 109.47423 * 29.97261 * 1 2 3 32 32 H 1.09000 * 109.47532 * 149.97581 * 1 2 3 33 33 H 1.08000 * 125.58421 * 0.02562 * 3 2 1 34 34 H 1.08995 * 109.47355 * 149.69024 * 6 5 4 35 35 H 1.08999 * 109.47155 * 29.68220 * 6 5 4 36 36 H 0.96997 * 119.99966 * 0.02562 * 9 7 6 37 37 H 1.09001 * 109.47630 * 59.99974 * 12 10 9 38 38 H 1.09004 * 109.47346 * 180.02562 * 12 10 9 39 39 H 1.09004 * 109.46741 * 59.99889 * 13 12 10 40 40 H 1.09000 * 109.47403 * 180.02562 * 13 12 10 41 41 H 1.09002 * 109.47016 * 179.97438 * 14 13 12 42 42 H 1.09004 * 109.47325 * 299.99623 * 14 13 12 43 43 H 1.09001 * 109.47630 * 180.02562 * 15 14 13 44 44 H 1.09004 * 109.47346 * 59.99924 * 15 14 13 45 45 H 1.09002 * 109.47153 * 64.99951 * 18 16 10 46 46 H 1.09001 * 109.46832 * 305.00142 * 18 16 10 47 47 H 0.96996 * 119.99606 * 0.02562 * 19 18 16 48 48 H 0.97001 * 120.00803 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2691 1.1136 0.0000 4 7 3.5065 0.7352 0.0048 5 7 3.5343 -0.6662 -0.0008 6 6 4.7312 -1.5110 -0.0006 7 6 5.1415 -1.8012 -1.4213 8 8 4.4973 -1.3475 -2.3433 9 7 6.2244 -2.5649 -1.6675 10 6 6.6229 -2.8475 -3.0486 11 1 6.4127 -1.9786 -3.6724 12 6 5.8366 -4.0519 -3.5701 13 6 6.1318 -5.2715 -2.6945 14 6 7.6293 -5.5815 -2.7399 15 6 8.4156 -4.3770 -2.2185 16 6 8.1204 -3.1575 -3.0940 17 1 8.4169 -3.3681 -4.1216 18 6 8.9067 -1.9530 -2.5726 19 7 10.3420 -2.2028 -2.7270 20 6 11.2484 -1.2576 -2.3267 21 1 10.9051 -0.3281 -1.8969 22 6 12.6082 -1.4939 -2.4734 23 7 13.0266 -2.6264 -2.9977 24 14 13.8448 -0.2049 -1.9268 25 1 14.2097 -0.4399 -0.5067 26 1 15.0620 -0.2965 -2.7725 27 1 13.2454 1.1466 -2.0667 28 6 2.2542 -1.0930 -0.0005 29 8 1.8805 -2.2524 -0.0006 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3634 0.8902 -0.5134 32 1 -0.3634 -0.8897 -0.5142 33 1 1.9249 2.1373 0.0004 34 1 4.5150 -2.4474 0.5136 35 1 5.5413 -0.9931 0.5129 36 1 6.7395 -2.9281 -0.9301 37 1 4.7697 -3.8311 -3.5377 38 1 6.1335 -4.2625 -4.5976 39 1 5.8353 -5.0612 -1.6669 40 1 5.5720 -6.1297 -3.0662 41 1 7.8396 -6.4500 -2.1158 42 1 7.9259 -5.7917 -3.7675 43 1 9.4825 -4.5977 -2.2512 44 1 8.1191 -4.1668 -1.1908 45 1 8.6763 -1.7973 -1.5186 46 1 8.6293 -1.0647 -3.1402 47 1 10.6502 -3.0374 -3.1133 48 1 13.9769 -2.7916 -3.1007 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498488486.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:57 Heat of formation + Delta-G solvation = 15.444346 kcal Electronic energy + Delta-G solvation = -29937.596045 eV Core-core repulsion = 25836.793301 eV Total energy + Delta-G solvation = -4100.802744 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.61818 -40.26473 -38.21596 -37.42035 -35.44800 -34.63941 -33.65407 -32.14619 -31.88947 -30.02833 -29.52697 -28.37626 -26.98839 -25.17374 -23.22307 -22.95084 -22.26051 -21.69706 -20.97222 -20.45403 -18.95776 -18.04379 -17.71739 -17.10277 -16.52261 -16.35526 -16.02446 -15.53585 -15.32311 -14.90840 -14.67490 -14.63620 -14.20196 -14.06543 -13.69816 -13.52739 -13.26414 -13.13041 -13.05990 -12.75889 -12.66450 -12.49027 -12.10960 -12.00787 -11.94755 -11.64479 -11.38835 -10.88898 -10.87414 -10.71872 -10.70639 -10.47026 -10.33736 -10.19285 -9.97187 -9.84332 -9.77548 -9.61003 -8.93341 -8.83244 -8.75358 -6.90927 -5.76182 -3.04428 1.43928 1.74813 2.46848 2.59661 2.82660 3.29489 3.43822 3.49358 3.50965 4.14614 4.45736 4.57100 4.64921 4.65557 4.83418 4.88173 4.91636 4.93151 4.95810 5.11221 5.13119 5.27495 5.35992 5.55869 5.58235 5.62888 5.65663 5.70564 5.77951 5.82609 5.84788 6.07990 6.16663 6.18273 6.25418 6.26320 6.30107 6.39810 6.50191 6.58803 6.69571 6.82290 6.88564 7.37895 7.51183 7.70955 7.83049 8.21546 8.42957 9.54254 10.12086 10.46881 11.46681 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013227 B = 0.002764 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.341380 B =10128.129995 C =11802.114955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.562 5.562 3 C 0.253 3.747 4 N -0.269 5.269 5 N -0.435 5.435 6 C 0.141 3.859 7 C 0.498 3.502 8 O -0.531 6.531 9 N -0.711 5.711 10 C 0.157 3.843 11 H 0.087 0.913 12 C -0.128 4.128 13 C -0.115 4.115 14 C -0.121 4.121 15 C -0.110 4.110 16 C -0.101 4.101 17 H 0.085 0.915 18 C 0.160 3.840 19 N -0.731 5.731 20 C -0.237 4.237 21 H 0.069 0.931 22 C -0.014 4.014 23 N -0.934 5.934 24 Si 0.906 3.094 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.282 1.282 28 C 0.652 3.348 29 O -0.554 6.554 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.231 0.769 34 H 0.124 0.876 35 H 0.128 0.872 36 H 0.402 0.598 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.079 0.921 44 H 0.055 0.945 45 H 0.018 0.982 46 H 0.017 0.983 47 H 0.384 0.616 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.941 1.817 6.994 25.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.292 5.292 3 C -0.046 4.046 4 N -0.090 5.090 5 N -0.255 5.255 6 C 0.015 3.985 7 C 0.282 3.718 8 O -0.407 6.407 9 N -0.364 5.364 10 C 0.053 3.947 11 H 0.105 0.895 12 C -0.167 4.167 13 C -0.153 4.153 14 C -0.158 4.158 15 C -0.148 4.148 16 C -0.121 4.121 17 H 0.104 0.896 18 C 0.033 3.967 19 N -0.375 5.375 20 C -0.369 4.369 21 H 0.087 0.913 22 C -0.210 4.210 23 N -0.583 5.583 24 Si 0.737 3.263 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.208 1.208 28 C 0.352 3.648 29 O -0.428 6.428 30 H 0.091 0.909 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.247 0.753 34 H 0.141 0.859 35 H 0.145 0.855 36 H 0.238 0.762 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.098 0.902 44 H 0.073 0.927 45 H 0.036 0.964 46 H 0.035 0.965 47 H 0.218 0.782 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -24.571 1.720 6.386 25.446 hybrid contribution 0.398 0.162 0.427 0.606 sum -24.174 1.882 6.813 25.186 Atomic orbital electron populations 1.21806 0.74202 1.04788 1.03395 1.45847 1.08833 1.06663 1.67822 1.25926 0.85760 0.94737 0.98219 1.77036 1.18203 0.91431 1.22293 1.48170 1.05416 1.03169 1.68736 1.21255 0.85879 0.95343 0.96008 1.20779 0.81040 0.78640 0.91321 1.90713 1.53088 1.51177 1.45712 1.46021 1.28881 1.51829 1.09648 1.20960 0.93893 0.97807 0.82076 0.89504 1.21899 1.00218 0.94918 0.99646 1.21489 0.96486 0.97316 0.99998 1.21589 0.94629 0.98083 1.01525 1.21534 1.01377 0.93639 0.98217 1.21631 0.92376 0.96696 1.01356 0.89638 1.20637 0.85379 0.93665 0.97039 1.42368 0.99141 1.20660 1.75356 1.19218 0.87110 0.97249 1.33291 0.91297 1.24722 0.96930 0.97444 1.01908 1.69652 1.14042 1.24092 1.50487 0.86202 0.81211 0.80937 0.77928 1.21763 1.21807 1.20788 1.16636 0.81926 0.85071 0.81190 1.91079 1.77671 1.15272 1.58731 0.90893 0.89312 0.89466 0.75267 0.85854 0.85463 0.76199 0.91857 0.91036 0.92269 0.92487 0.92239 0.91926 0.90235 0.92662 0.96395 0.96485 0.78217 0.93553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.49 11.05 59.84 0.66 1.15 16 2 N -0.56 -5.18 3.14 -130.11 -0.41 -5.59 16 3 C 0.25 1.92 12.66 -89.12 -1.13 0.80 16 4 N -0.27 -3.11 12.53 29.87 0.37 -2.73 16 5 N -0.44 -5.64 3.11 -66.31 -0.21 -5.85 16 6 C 0.14 1.57 6.87 -5.19 -0.04 1.54 16 7 C 0.50 6.99 7.86 -10.99 -0.09 6.91 16 8 O -0.53 -9.60 16.09 5.55 0.09 -9.51 16 9 N -0.71 -8.97 3.62 -53.81 -0.19 -9.16 16 10 C 0.16 2.20 2.23 -67.93 -0.15 2.05 16 11 H 0.09 1.39 7.58 -51.93 -0.39 1.00 16 12 C -0.13 -1.63 5.60 -26.73 -0.15 -1.78 16 13 C -0.12 -1.32 5.77 -26.73 -0.15 -1.47 16 14 C -0.12 -1.45 5.92 -26.73 -0.16 -1.61 16 15 C -0.11 -1.56 4.91 -26.73 -0.13 -1.69 16 16 C -0.10 -1.56 2.02 -90.62 -0.18 -1.75 16 17 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 18 C 0.16 3.14 5.42 -4.04 -0.02 3.12 16 19 N -0.73 -18.05 5.33 -59.91 -0.32 -18.37 16 20 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 21 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 22 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 23 N -0.93 -28.00 13.06 55.49 0.72 -27.28 16 24 Si 0.91 22.41 29.55 -169.99 -5.02 17.38 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 27 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 28 C 0.65 8.90 8.60 -86.73 -0.75 8.16 16 29 O -0.55 -9.22 17.71 5.09 0.09 -9.13 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.09 0.54 8.08 -51.93 -0.42 0.12 16 33 H 0.23 0.42 8.06 -52.49 -0.42 0.00 16 34 H 0.12 1.13 8.11 -51.93 -0.42 0.71 16 35 H 0.13 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.40 4.35 6.67 -40.82 -0.27 4.08 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.06 0.67 7.60 -51.93 -0.39 0.27 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.08 1.35 7.18 -51.93 -0.37 0.98 16 44 H 0.05 0.72 6.51 -51.93 -0.34 0.38 16 45 H 0.02 0.35 7.61 -51.93 -0.40 -0.05 16 46 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.38 9.90 6.85 -40.82 -0.28 9.63 16 48 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 391.66 15.07 5.90 5.90 Total: -1.00 -38.73 391.66 -8.99 -47.72 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -7.48 Total: 8.47 kcal Atomic # 6 Polarization: 10.68 SS G_CDS: -2.53 Total: 8.15 kcal Atomic # 7 Polarization: -68.95 SS G_CDS: -0.03 Total: -68.98 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: 0.18 Total: -18.64 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -38.73 -8.99 -47.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498488486.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.163 kcal (2) G-P(sol) polarization free energy of solvation -38.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds