Wall clock time and date at job start Tue Mar 31 2020 21:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.37360 * 125.83348 * 2 1 4 4 N 1.29400 * 108.83054 * 179.77595 * 3 2 1 5 5 N 1.40172 * 108.13909 * 0.38304 * 4 3 2 6 6 C 1.46498 * 126.35074 * 179.88268 * 5 4 3 7 7 C 1.50701 * 109.47016 * 269.68714 * 6 5 4 8 8 O 1.21283 * 120.00236 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00314 * 179.97438 * 7 6 5 10 10 C 1.46503 * 120.00139 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.46913 * 35.00537 * 10 9 7 12 12 C 1.52997 * 109.47269 * 275.00485 * 10 9 7 13 13 C 1.53004 * 109.47236 * 299.99844 * 12 10 9 14 14 C 1.52997 * 109.47024 * 300.00477 * 13 12 10 15 15 C 1.52997 * 109.47504 * 59.99687 * 14 13 12 16 16 C 1.52997 * 109.46834 * 155.00103 * 10 9 7 17 17 H 1.09004 * 109.46881 * 179.97438 * 16 10 9 18 18 C 1.52997 * 109.47504 * 300.00238 * 16 10 9 19 19 N 1.46505 * 109.47212 * 184.99959 * 18 16 10 20 20 C 1.36936 * 119.99992 * 179.97438 * 19 18 16 21 21 H 1.08006 * 119.99834 * 0.02562 * 20 19 18 22 22 C 1.38801 * 120.00093 * 180.02562 * 20 19 18 23 23 N 1.31619 * 120.00176 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00265 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46951 * 89.99797 * 24 22 20 26 26 H 1.48500 * 109.47313 * 210.00112 * 24 22 20 27 27 H 1.48501 * 109.46991 * 330.00153 * 24 22 20 28 28 C 1.34818 * 125.83137 * 180.02562 * 2 1 3 29 29 O 1.21813 * 126.30341 * 359.97438 * 28 2 1 30 30 H 1.09001 * 109.47086 * 269.97321 * 1 2 3 31 31 H 1.08995 * 109.47423 * 29.97261 * 1 2 3 32 32 H 1.09000 * 109.47532 * 149.97581 * 1 2 3 33 33 H 1.08000 * 125.58421 * 0.02562 * 3 2 1 34 34 H 1.08995 * 109.47355 * 149.69024 * 6 5 4 35 35 H 1.08999 * 109.47155 * 29.68220 * 6 5 4 36 36 H 0.96997 * 119.99966 * 0.02562 * 9 7 6 37 37 H 1.09001 * 109.47630 * 59.99974 * 12 10 9 38 38 H 1.09004 * 109.47346 * 180.02562 * 12 10 9 39 39 H 1.09004 * 109.46741 * 59.99889 * 13 12 10 40 40 H 1.09000 * 109.47403 * 180.02562 * 13 12 10 41 41 H 1.09002 * 109.47016 * 179.97438 * 14 13 12 42 42 H 1.09004 * 109.47325 * 299.99623 * 14 13 12 43 43 H 1.09001 * 109.47630 * 180.02562 * 15 14 13 44 44 H 1.09004 * 109.47346 * 59.99924 * 15 14 13 45 45 H 1.09002 * 109.47153 * 64.99951 * 18 16 10 46 46 H 1.09001 * 109.46832 * 305.00142 * 18 16 10 47 47 H 0.96996 * 119.99606 * 0.02562 * 19 18 16 48 48 H 0.97001 * 120.00803 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2691 1.1136 0.0000 4 7 3.5065 0.7352 0.0048 5 7 3.5343 -0.6662 -0.0008 6 6 4.7312 -1.5110 -0.0006 7 6 5.1415 -1.8012 -1.4213 8 8 4.4973 -1.3475 -2.3433 9 7 6.2244 -2.5649 -1.6675 10 6 6.6229 -2.8475 -3.0486 11 1 6.4127 -1.9786 -3.6724 12 6 5.8366 -4.0519 -3.5701 13 6 6.1318 -5.2715 -2.6945 14 6 7.6293 -5.5815 -2.7399 15 6 8.4156 -4.3770 -2.2185 16 6 8.1204 -3.1575 -3.0940 17 1 8.4169 -3.3681 -4.1216 18 6 8.9067 -1.9530 -2.5726 19 7 10.3420 -2.2028 -2.7270 20 6 11.2484 -1.2576 -2.3267 21 1 10.9051 -0.3281 -1.8969 22 6 12.6082 -1.4939 -2.4734 23 7 13.0266 -2.6264 -2.9977 24 14 13.8448 -0.2049 -1.9268 25 1 14.2097 -0.4399 -0.5067 26 1 15.0620 -0.2965 -2.7725 27 1 13.2454 1.1466 -2.0667 28 6 2.2542 -1.0930 -0.0005 29 8 1.8805 -2.2524 -0.0006 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3634 0.8902 -0.5134 32 1 -0.3634 -0.8897 -0.5142 33 1 1.9249 2.1373 0.0004 34 1 4.5150 -2.4474 0.5136 35 1 5.5413 -0.9931 0.5129 36 1 6.7395 -2.9281 -0.9301 37 1 4.7697 -3.8311 -3.5377 38 1 6.1335 -4.2625 -4.5976 39 1 5.8353 -5.0612 -1.6669 40 1 5.5720 -6.1297 -3.0662 41 1 7.8396 -6.4500 -2.1158 42 1 7.9259 -5.7917 -3.7675 43 1 9.4825 -4.5977 -2.2512 44 1 8.1191 -4.1668 -1.1908 45 1 8.6763 -1.7973 -1.5186 46 1 8.6293 -1.0647 -3.1402 47 1 10.6502 -3.0374 -3.1133 48 1 13.9769 -2.7916 -3.1007 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498488486.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:56 Heat of formation + Delta-G solvation = -10.793193 kcal Electronic energy + Delta-G solvation = -29938.733790 eV Core-core repulsion = 25836.793301 eV Total energy + Delta-G solvation = -4101.940489 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.41516 -41.42547 -39.40755 -38.41417 -36.48023 -36.19217 -34.77951 -33.71659 -32.93116 -31.25460 -31.02919 -29.21254 -27.68891 -26.84943 -24.68641 -24.05479 -23.33319 -22.61453 -22.09690 -21.71888 -20.09301 -19.35684 -18.74526 -18.56780 -17.44557 -17.14971 -17.05939 -16.72630 -16.48031 -16.28595 -16.05269 -15.52821 -15.41053 -15.18157 -15.09054 -14.89713 -14.65732 -14.33600 -14.05972 -13.57848 -13.51912 -13.47948 -13.30782 -13.11232 -12.96801 -12.91069 -12.86204 -12.70762 -12.60761 -12.11144 -11.94512 -11.84435 -11.58789 -11.43326 -11.41090 -11.20355 -11.04295 -10.86038 -10.75293 -10.06161 -9.65542 -8.97828 -7.94235 -5.22406 0.66720 1.08994 1.47842 1.49046 1.50847 1.55112 1.57568 2.09493 2.35389 2.56356 3.39202 3.45698 3.53222 3.70117 3.77857 3.82658 4.06560 4.07602 4.10536 4.13837 4.21535 4.40727 4.41916 4.47129 4.48130 4.52960 4.56683 4.64184 4.72402 4.79104 4.87426 4.89883 4.99791 5.02000 5.06550 5.14923 5.25462 5.30623 5.32504 5.45061 5.48185 5.52363 5.58306 5.67274 6.28026 6.45568 6.60652 6.92022 7.14476 7.35118 8.10508 8.34989 9.29017 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013227 B = 0.002764 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.341380 B =10128.129995 C =11802.114955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.559 5.559 3 C 0.277 3.723 4 N -0.314 5.314 5 N -0.445 5.445 6 C 0.139 3.861 7 C 0.498 3.502 8 O -0.576 6.576 9 N -0.701 5.701 10 C 0.166 3.834 11 H 0.064 0.936 12 C -0.122 4.122 13 C -0.108 4.108 14 C -0.113 4.113 15 C -0.105 4.105 16 C -0.087 4.087 17 H 0.076 0.924 18 C 0.162 3.838 19 N -0.740 5.740 20 C -0.244 4.244 21 H 0.071 0.929 22 C -0.073 4.073 23 N -0.967 5.967 24 Si 0.971 3.029 25 H -0.285 1.285 26 H -0.296 1.296 27 H -0.273 1.273 28 C 0.632 3.368 29 O -0.598 6.598 30 H 0.091 0.909 31 H 0.129 0.871 32 H 0.068 0.932 33 H 0.288 0.712 34 H 0.142 0.858 35 H 0.151 0.849 36 H 0.413 0.587 37 H 0.050 0.950 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.061 0.939 43 H 0.051 0.949 44 H 0.069 0.931 45 H 0.029 0.971 46 H 0.002 0.998 47 H 0.376 0.624 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.335 2.882 8.319 27.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.287 5.287 3 C -0.020 4.020 4 N -0.135 5.135 5 N -0.264 5.264 6 C 0.014 3.986 7 C 0.283 3.717 8 O -0.455 6.455 9 N -0.355 5.355 10 C 0.060 3.940 11 H 0.082 0.918 12 C -0.160 4.160 13 C -0.146 4.146 14 C -0.151 4.151 15 C -0.142 4.142 16 C -0.106 4.106 17 H 0.094 0.906 18 C 0.036 3.964 19 N -0.383 5.383 20 C -0.376 4.376 21 H 0.089 0.911 22 C -0.265 4.265 23 N -0.618 5.618 24 Si 0.800 3.200 25 H -0.212 1.212 26 H -0.222 1.222 27 H -0.198 1.198 28 C 0.331 3.669 29 O -0.475 6.475 30 H 0.109 0.891 31 H 0.147 0.853 32 H 0.087 0.913 33 H 0.303 0.697 34 H 0.159 0.841 35 H 0.169 0.831 36 H 0.251 0.749 37 H 0.069 0.931 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.079 0.921 43 H 0.070 0.930 44 H 0.087 0.913 45 H 0.047 0.953 46 H 0.020 0.980 47 H 0.209 0.791 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -26.001 2.822 7.743 27.275 hybrid contribution 0.723 -0.077 0.001 0.727 sum -25.278 2.744 7.744 26.580 Atomic orbital electron populations 1.22167 0.71756 1.05884 1.04992 1.46129 1.10232 1.05908 1.66420 1.27103 0.84436 0.96167 0.94335 1.77038 1.20518 0.90464 1.25451 1.48346 1.05463 1.04078 1.68479 1.21423 0.86535 0.96611 0.94048 1.21316 0.80470 0.77718 0.92179 1.90685 1.54518 1.52955 1.47321 1.45930 1.28699 1.51450 1.09396 1.20744 0.92887 0.97649 0.82695 0.91828 1.21830 0.99014 0.94820 1.00366 1.21448 0.96081 0.97017 1.00035 1.21526 0.94520 0.97362 1.01642 1.21463 1.00027 0.93911 0.98830 1.21441 0.92603 0.95619 1.00929 0.90563 1.20738 0.83339 0.94921 0.97434 1.42528 1.00852 1.19840 1.75083 1.19579 0.87931 0.97697 1.32375 0.91077 1.25512 0.98772 0.99500 1.02760 1.69802 1.14002 1.25899 1.52082 0.85179 0.78535 0.78892 0.77386 1.21169 1.22244 1.19785 1.17029 0.82736 0.85543 0.81545 1.91020 1.78492 1.17157 1.60864 0.89080 0.85292 0.91288 0.69672 0.84076 0.83109 0.74919 0.93081 0.90463 0.91691 0.90956 0.90712 0.92069 0.93043 0.91273 0.95340 0.98030 0.79133 0.94005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.69 11.05 127.77 1.41 2.10 16 2 N -0.56 -9.35 3.14 -683.70 -2.15 -11.50 16 3 C 0.28 3.47 12.66 179.82 2.28 5.74 16 4 N -0.31 -6.81 12.53 -59.42 -0.74 -7.56 16 5 N -0.45 -11.33 3.11 -481.78 -1.50 -12.83 16 6 C 0.14 3.02 6.87 85.63 0.59 3.61 16 7 C 0.50 13.96 7.86 87.66 0.69 14.65 16 8 O -0.58 -21.28 16.09 -3.04 -0.05 -21.33 16 9 N -0.70 -17.38 3.62 -442.53 -1.60 -18.98 16 10 C 0.17 4.65 2.23 44.99 0.10 4.75 16 11 H 0.06 2.11 7.58 -2.39 -0.02 2.09 16 12 C -0.12 -3.03 5.60 30.59 0.17 -2.85 16 13 C -0.11 -2.28 5.77 30.59 0.18 -2.10 16 14 C -0.11 -2.53 5.92 30.59 0.18 -2.35 16 15 C -0.10 -2.90 4.91 30.59 0.15 -2.75 16 16 C -0.09 -2.68 2.02 -10.79 -0.02 -2.70 16 17 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 18 C 0.16 6.41 5.42 86.38 0.47 6.88 16 19 N -0.74 -37.07 5.33 -343.45 -1.83 -38.90 16 20 C -0.24 -13.62 9.99 84.03 0.84 -12.78 16 21 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 22 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 23 N -0.97 -58.75 13.06 21.65 0.28 -58.47 16 24 Si 0.97 46.15 29.55 68.60 2.03 48.17 16 25 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 26 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 27 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 28 C 0.63 17.15 8.60 178.99 1.54 18.69 16 29 O -0.60 -20.36 17.71 -4.71 -0.08 -20.44 16 30 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.13 -0.08 8.14 -2.39 -0.02 -0.10 16 32 H 0.07 0.81 8.08 -2.39 -0.02 0.79 16 33 H 0.29 -0.35 8.06 -2.91 -0.02 -0.37 16 34 H 0.14 2.49 8.11 -2.39 -0.02 2.47 16 35 H 0.15 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.41 8.40 6.67 -92.71 -0.62 7.78 16 37 H 0.05 1.42 8.14 -2.39 -0.02 1.41 16 38 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.06 1.31 7.60 -2.39 -0.02 1.30 16 40 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 43 H 0.05 1.75 7.18 -2.39 -0.02 1.73 16 44 H 0.07 1.70 6.51 -2.39 -0.02 1.69 16 45 H 0.03 1.08 7.61 -2.39 -0.02 1.06 16 46 H 0.00 0.07 8.14 -2.39 -0.02 0.06 16 47 H 0.38 19.87 6.85 -92.71 -0.64 19.24 16 48 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -87.08 391.66 3.12 -83.96 By element: Atomic # 1 Polarization: 30.98 SS G_CDS: -0.27 Total: 30.71 kcal Atomic # 6 Polarization: 18.12 SS G_CDS: 9.04 Total: 27.16 kcal Atomic # 7 Polarization: -140.69 SS G_CDS: -7.54 Total: -148.23 kcal Atomic # 8 Polarization: -41.64 SS G_CDS: -0.13 Total: -41.77 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.17 kcal Total: -87.08 3.12 -83.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498488486.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.166 kcal (2) G-P(sol) polarization free energy of solvation -87.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds