Wall clock time and date at job start Tue Mar 31 2020 21:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 N 1.28595 * 124.62085 * 2 1 4 4 C 1.31381 * 108.72060 * 179.97438 * 3 2 1 5 5 C 1.39678 * 105.89910 * 0.02562 * 4 3 2 6 6 C 1.50703 * 127.04929 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.47457 * 124.99838 * 6 5 4 8 8 C 1.50698 * 109.47158 * 179.97438 * 7 6 5 9 9 O 1.21278 * 120.00220 * 0.02562 * 8 7 6 10 10 N 1.34784 * 119.99511 * 179.97438 * 8 7 6 11 11 C 1.46503 * 119.99456 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46751 * 176.96659 * 11 10 8 13 13 N 1.46496 * 109.54298 * 54.82372 * 12 11 10 14 14 C 1.36933 * 120.00253 * 61.86859 * 13 12 11 15 15 H 1.08010 * 119.99948 * 354.89986 * 14 13 12 16 16 C 1.38817 * 120.00417 * 174.89752 * 14 13 12 17 17 N 1.31618 * 119.99998 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 119.99415 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.46773 * 269.99283 * 18 16 14 20 20 H 1.48495 * 109.47706 * 29.99633 * 18 16 14 21 21 H 1.48506 * 109.46939 * 150.00054 * 18 16 14 22 22 C 1.53175 * 109.53962 * 175.00215 * 12 11 10 23 23 C 1.53288 * 109.06274 * 176.85511 * 22 12 11 24 24 O 1.42908 * 109.45737 * 302.44080 * 23 22 12 25 25 C 1.42905 * 114.09697 * 61.16054 * 24 23 22 26 26 C 1.53097 * 109.41317 * 298.84214 * 25 24 23 27 27 N 1.28601 * 124.61890 * 180.25144 * 2 1 3 28 28 H 1.08999 * 109.47195 * 90.02174 * 1 2 3 29 29 H 1.09005 * 109.47519 * 210.02325 * 1 2 3 30 30 H 1.08997 * 109.47138 * 330.02142 * 1 2 3 31 31 H 1.08001 * 127.05352 * 179.97438 * 4 3 2 32 32 H 1.08998 * 109.47576 * 4.99198 * 6 5 4 33 33 H 1.09008 * 109.46826 * 244.99665 * 6 5 4 34 34 H 1.09003 * 109.47101 * 59.99617 * 7 6 5 35 35 H 1.08997 * 109.46672 * 300.00125 * 7 6 5 36 36 H 0.96998 * 120.00254 * 0.02562 * 10 8 7 37 37 H 1.09003 * 109.47061 * 56.96796 * 11 10 8 38 38 H 1.08999 * 109.47126 * 296.97036 * 11 10 8 39 39 H 0.97005 * 119.99871 * 241.86721 * 13 12 11 40 40 H 0.96999 * 119.99682 * 180.02562 * 17 16 14 41 41 H 1.09000 * 109.52289 * 296.83515 * 22 12 11 42 42 H 1.09001 * 109.52647 * 57.03164 * 22 12 11 43 43 H 1.09001 * 109.45777 * 182.44860 * 23 22 12 44 44 H 1.08998 * 109.47131 * 62.44127 * 23 22 12 45 45 H 1.09000 * 109.48145 * 178.85803 * 25 24 23 46 46 H 1.08997 * 109.48895 * 58.82545 * 25 24 23 47 47 H 1.09003 * 109.52172 * 297.70309 * 26 25 24 48 48 H 1.09000 * 109.57367 * 177.55047 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.1955 1.0582 0.0000 4 6 3.4591 0.6983 0.0006 5 6 3.4590 -0.6985 0.0003 6 6 4.6618 -1.6065 0.0002 7 6 4.5704 -2.5743 1.1817 8 6 5.7728 -3.4827 1.1811 9 8 6.6198 -3.3671 0.3208 10 7 5.9074 -4.4229 2.1374 11 6 7.0767 -5.3056 2.1372 12 6 7.0238 -6.2223 3.3611 13 7 5.7469 -6.9401 3.3809 14 6 5.4236 -7.7906 2.3576 15 1 6.0709 -7.8702 1.4965 16 6 4.2641 -8.5507 2.4267 17 7 3.9532 -9.3678 1.4428 18 14 3.1445 -8.4127 3.9156 19 1 3.5592 -9.4042 4.9403 20 1 3.2419 -7.0439 4.4831 21 1 1.7421 -8.6804 3.5068 22 6 8.1767 -7.2288 3.2975 23 6 8.1604 -8.0894 4.5659 24 8 8.2594 -7.2455 5.7150 25 6 7.1830 -6.3153 5.8502 26 6 7.1600 -5.3836 4.6356 27 7 2.1955 -1.0583 -0.0046 28 1 -0.3633 -0.0004 -1.0276 29 1 -0.3634 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5135 31 1 4.3211 1.3490 0.0003 32 1 5.5686 -1.0084 0.0898 33 1 4.6901 -2.1719 -0.9313 34 1 3.6635 -3.1724 1.0920 35 1 4.5420 -2.0089 2.1131 36 1 5.2302 -4.5152 2.8257 37 1 7.9855 -4.7048 2.1722 38 1 7.0754 -5.9101 1.2301 39 1 5.1304 -6.8130 4.1190 40 1 3.1428 -9.8987 1.4911 41 1 8.0562 -7.8657 2.4212 42 1 9.1242 -6.6938 3.2328 43 1 9.0044 -8.7790 4.5476 44 1 7.2297 -8.6549 4.6093 45 1 7.3228 -5.7270 6.7571 46 1 6.2393 -6.8574 5.9104 47 1 8.0870 -4.8115 4.5978 48 1 6.3138 -4.7012 4.7148 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500587104.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:14 Heat of formation + Delta-G solvation = 36.023053 kcal Electronic energy + Delta-G solvation = -29792.507054 eV Core-core repulsion = 25692.596670 eV Total energy + Delta-G solvation = -4099.910385 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.67825 -39.79902 -38.87579 -36.00956 -34.92126 -33.47818 -33.05539 -32.22645 -31.64973 -30.75163 -29.86775 -28.20343 -26.82768 -24.63548 -23.85529 -23.02513 -22.47990 -22.00898 -20.73248 -19.79690 -18.59401 -17.88903 -17.52930 -17.05137 -16.68639 -15.75311 -15.63198 -15.53762 -15.35673 -14.95248 -14.65078 -14.43321 -14.23299 -14.02349 -13.61712 -13.35057 -13.25254 -13.13035 -12.85912 -12.70862 -12.44691 -12.20008 -12.08973 -11.92900 -11.67176 -11.50588 -11.03719 -11.01977 -11.00050 -10.92251 -10.87813 -10.42783 -10.35560 -10.11870 -9.88059 -9.66889 -9.51786 -9.28389 -9.21734 -8.88832 -8.48568 -7.42506 -5.86259 -3.24934 1.66399 2.16793 2.28460 3.05081 3.23499 3.28957 3.36643 3.64282 3.93807 4.25622 4.47457 4.62163 4.71579 4.77895 4.95473 4.97974 4.97988 5.09066 5.12795 5.18427 5.26190 5.35409 5.39763 5.44364 5.54911 5.61829 5.64274 5.77519 5.86382 5.96900 5.97101 6.01553 6.09262 6.15512 6.19034 6.20585 6.27306 6.45590 6.52655 6.53487 6.62868 6.70286 6.97513 7.59436 7.86828 7.99310 8.19059 8.31429 8.65817 9.07212 9.79063 9.97067 11.31401 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011755 B = 0.002983 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.370229 B = 9383.317503 C =10580.122211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.163 5.163 3 N -0.294 5.294 4 C -0.024 4.024 5 C 0.008 3.992 6 C -0.012 4.012 7 C -0.135 4.135 8 C 0.512 3.488 9 O -0.555 6.555 10 N -0.704 5.704 11 C 0.119 3.881 12 C 0.195 3.805 13 N -0.740 5.740 14 C -0.241 4.241 15 H 0.092 0.908 16 C 0.012 3.988 17 N -0.928 5.928 18 Si 0.879 3.121 19 H -0.284 1.284 20 H -0.280 1.280 21 H -0.292 1.292 22 C -0.152 4.152 23 C 0.069 3.931 24 O -0.391 6.391 25 C 0.066 3.934 26 C -0.155 4.155 27 N -0.283 5.283 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.197 0.803 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.399 0.601 37 H 0.056 0.944 38 H 0.070 0.930 39 H 0.361 0.639 40 H 0.260 0.740 41 H 0.084 0.916 42 H 0.058 0.942 43 H 0.082 0.918 44 H 0.065 0.935 45 H 0.084 0.916 46 H 0.050 0.950 47 H 0.075 0.925 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.129 17.308 3.242 17.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.063 5.063 3 N -0.136 5.136 4 C -0.206 4.206 5 C -0.155 4.155 6 C -0.052 4.052 7 C -0.176 4.176 8 C 0.298 3.702 9 O -0.434 6.434 10 N -0.354 5.354 11 C -0.007 4.007 12 C 0.104 3.896 13 N -0.383 5.383 14 C -0.371 4.371 15 H 0.110 0.890 16 C -0.184 4.184 17 N -0.574 5.574 18 Si 0.710 3.290 19 H -0.211 1.211 20 H -0.206 1.206 21 H -0.218 1.218 22 C -0.192 4.192 23 C -0.008 4.008 24 O -0.310 6.310 25 C -0.011 4.011 26 C -0.193 4.193 27 N -0.125 5.125 28 H 0.106 0.894 29 H 0.121 0.879 30 H 0.119 0.881 31 H 0.214 0.786 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.117 0.883 35 H 0.107 0.893 36 H 0.234 0.766 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.195 0.805 40 H 0.070 0.930 41 H 0.102 0.898 42 H 0.077 0.923 43 H 0.100 0.900 44 H 0.084 0.916 45 H 0.102 0.898 46 H 0.068 0.932 47 H 0.093 0.907 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.823 17.213 2.548 17.496 hybrid contribution -0.818 -0.041 1.029 1.315 sum -2.641 17.172 3.577 17.738 Atomic orbital electron populations 1.22098 0.70383 1.05779 1.04863 1.47913 1.08844 0.99410 1.50165 1.74009 1.04024 1.16241 1.19291 1.24676 0.94398 0.94762 1.06753 1.23294 0.92674 0.94180 1.05329 1.19625 0.91380 0.94763 0.99403 1.21584 0.98208 0.97712 1.00047 1.20454 0.87344 0.81155 0.81291 1.90664 1.43764 1.71654 1.37321 1.45747 1.25455 1.34092 1.30061 1.21770 0.86691 0.91720 1.00499 1.19794 0.87603 0.90630 0.91602 1.42894 1.16512 1.52726 1.26211 1.18910 1.06137 1.14398 0.97661 0.88986 1.24646 0.98210 0.98400 0.97188 1.69687 1.26534 1.29152 1.32068 0.86671 0.81203 0.77417 0.83743 1.21107 1.20636 1.21835 1.22466 0.97678 0.99330 0.99694 1.22517 1.02161 0.91951 0.84152 1.87822 1.46707 1.50500 1.45992 1.22444 0.90685 0.90875 0.97118 1.22403 1.02511 0.98537 0.95824 1.74071 1.03705 1.15382 1.19389 0.89380 0.87864 0.88094 0.78586 0.88875 0.89124 0.88314 0.89346 0.76584 0.92575 0.91177 0.80498 0.92999 0.89780 0.92314 0.89958 0.91623 0.89807 0.93174 0.90674 0.91288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.69 11.57 59.84 0.69 1.39 16 2 N -0.16 -1.85 4.35 -16.64 -0.07 -1.93 16 3 N -0.29 -3.49 12.05 30.68 0.37 -3.12 16 4 C -0.02 -0.26 12.15 -17.21 -0.21 -0.46 16 5 C 0.01 0.10 6.61 -82.25 -0.54 -0.44 16 6 C -0.01 -0.14 5.10 -27.88 -0.14 -0.28 16 7 C -0.13 -1.71 5.68 -27.88 -0.16 -1.86 16 8 C 0.51 8.21 7.83 -10.98 -0.09 8.12 16 9 O -0.55 -10.61 15.98 5.56 0.09 -10.52 16 10 N -0.70 -11.29 5.13 -60.29 -0.31 -11.60 16 11 C 0.12 2.05 4.36 -4.04 -0.02 2.03 16 12 C 0.20 3.26 0.41 -131.64 -0.05 3.20 16 13 N -0.74 -14.81 3.42 -47.06 -0.16 -14.97 16 14 C -0.24 -6.02 9.16 -15.06 -0.14 -6.16 16 15 H 0.09 2.54 7.00 -52.48 -0.37 2.18 16 16 C 0.01 0.32 5.50 -17.43 -0.10 0.23 16 17 N -0.93 -27.60 13.97 55.49 0.78 -26.83 16 18 Si 0.88 20.54 27.79 -169.99 -4.72 15.82 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.28 -5.97 6.45 56.52 0.36 -5.61 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 C -0.15 -2.52 4.80 -26.49 -0.13 -2.64 16 23 C 0.07 1.13 6.68 37.31 0.25 1.38 16 24 O -0.39 -6.36 10.77 -35.23 -0.38 -6.74 16 25 C 0.07 0.95 6.67 37.21 0.25 1.19 16 26 C -0.15 -2.15 4.80 -26.59 -0.13 -2.28 16 27 N -0.28 -3.74 12.04 33.72 0.41 -3.33 16 28 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.20 1.44 8.06 -52.49 -0.42 1.02 16 32 H 0.09 0.99 8.09 -51.93 -0.42 0.57 16 33 H 0.09 1.20 8.10 -51.92 -0.42 0.78 16 34 H 0.10 1.33 8.14 -51.93 -0.42 0.90 16 35 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.40 6.05 7.41 -40.82 -0.30 5.74 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.07 1.43 7.46 -51.93 -0.39 1.04 16 39 H 0.36 7.21 4.63 -40.82 -0.19 7.02 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.08 1.55 7.19 -51.93 -0.37 1.18 16 42 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.07 1.24 7.75 -51.93 -0.40 0.84 16 45 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.05 0.78 7.14 -51.93 -0.37 0.41 16 47 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.07 0.88 7.36 -51.93 -0.38 0.49 16 LS Contribution 387.42 15.07 5.84 5.84 Total: -1.00 -33.65 387.42 -6.12 -39.76 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: -7.44 Total: 14.20 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -0.51 Total: 3.41 kcal Atomic # 7 Polarization: -62.78 SS G_CDS: 1.01 Total: -61.77 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -0.29 Total: -17.26 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.72 Total: 15.82 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.65 -6.12 -39.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500587104.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.787 kcal (2) G-P(sol) polarization free energy of solvation -33.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds