Wall clock time and date at job start Tue Mar 31 2020 21:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 N 1.28595 * 124.62085 * 2 1 4 4 C 1.31381 * 108.72060 * 179.97438 * 3 2 1 5 5 C 1.39678 * 105.89910 * 0.02562 * 4 3 2 6 6 C 1.50703 * 127.04929 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.47457 * 124.99838 * 6 5 4 8 8 C 1.50698 * 109.47158 * 179.97438 * 7 6 5 9 9 O 1.21278 * 120.00220 * 0.02562 * 8 7 6 10 10 N 1.34784 * 119.99511 * 179.97438 * 8 7 6 11 11 C 1.46503 * 119.99456 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46751 * 176.96659 * 11 10 8 13 13 N 1.46496 * 109.54298 * 54.82372 * 12 11 10 14 14 C 1.36933 * 120.00253 * 61.86859 * 13 12 11 15 15 H 1.08010 * 119.99948 * 354.89986 * 14 13 12 16 16 C 1.38817 * 120.00417 * 174.89752 * 14 13 12 17 17 N 1.31618 * 119.99998 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 119.99415 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.46773 * 269.99283 * 18 16 14 20 20 H 1.48495 * 109.47706 * 29.99633 * 18 16 14 21 21 H 1.48506 * 109.46939 * 150.00054 * 18 16 14 22 22 C 1.53175 * 109.53962 * 175.00215 * 12 11 10 23 23 C 1.53288 * 109.06274 * 176.85511 * 22 12 11 24 24 O 1.42908 * 109.45737 * 302.44080 * 23 22 12 25 25 C 1.42905 * 114.09697 * 61.16054 * 24 23 22 26 26 C 1.53097 * 109.41317 * 298.84214 * 25 24 23 27 27 N 1.28601 * 124.61890 * 180.25144 * 2 1 3 28 28 H 1.08999 * 109.47195 * 90.02174 * 1 2 3 29 29 H 1.09005 * 109.47519 * 210.02325 * 1 2 3 30 30 H 1.08997 * 109.47138 * 330.02142 * 1 2 3 31 31 H 1.08001 * 127.05352 * 179.97438 * 4 3 2 32 32 H 1.08998 * 109.47576 * 4.99198 * 6 5 4 33 33 H 1.09008 * 109.46826 * 244.99665 * 6 5 4 34 34 H 1.09003 * 109.47101 * 59.99617 * 7 6 5 35 35 H 1.08997 * 109.46672 * 300.00125 * 7 6 5 36 36 H 0.96998 * 120.00254 * 0.02562 * 10 8 7 37 37 H 1.09003 * 109.47061 * 56.96796 * 11 10 8 38 38 H 1.08999 * 109.47126 * 296.97036 * 11 10 8 39 39 H 0.97005 * 119.99871 * 241.86721 * 13 12 11 40 40 H 0.96999 * 119.99682 * 180.02562 * 17 16 14 41 41 H 1.09000 * 109.52289 * 296.83515 * 22 12 11 42 42 H 1.09001 * 109.52647 * 57.03164 * 22 12 11 43 43 H 1.09001 * 109.45777 * 182.44860 * 23 22 12 44 44 H 1.08998 * 109.47131 * 62.44127 * 23 22 12 45 45 H 1.09000 * 109.48145 * 178.85803 * 25 24 23 46 46 H 1.08997 * 109.48895 * 58.82545 * 25 24 23 47 47 H 1.09003 * 109.52172 * 297.70309 * 26 25 24 48 48 H 1.09000 * 109.57367 * 177.55047 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.1955 1.0582 0.0000 4 6 3.4591 0.6983 0.0006 5 6 3.4590 -0.6985 0.0003 6 6 4.6618 -1.6065 0.0002 7 6 4.5704 -2.5743 1.1817 8 6 5.7728 -3.4827 1.1811 9 8 6.6198 -3.3671 0.3208 10 7 5.9074 -4.4229 2.1374 11 6 7.0767 -5.3056 2.1372 12 6 7.0238 -6.2223 3.3611 13 7 5.7469 -6.9401 3.3809 14 6 5.4236 -7.7906 2.3576 15 1 6.0709 -7.8702 1.4965 16 6 4.2641 -8.5507 2.4267 17 7 3.9532 -9.3678 1.4428 18 14 3.1445 -8.4127 3.9156 19 1 3.5592 -9.4042 4.9403 20 1 3.2419 -7.0439 4.4831 21 1 1.7421 -8.6804 3.5068 22 6 8.1767 -7.2288 3.2975 23 6 8.1604 -8.0894 4.5659 24 8 8.2594 -7.2455 5.7150 25 6 7.1830 -6.3153 5.8502 26 6 7.1600 -5.3836 4.6356 27 7 2.1955 -1.0583 -0.0046 28 1 -0.3633 -0.0004 -1.0276 29 1 -0.3634 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5135 31 1 4.3211 1.3490 0.0003 32 1 5.5686 -1.0084 0.0898 33 1 4.6901 -2.1719 -0.9313 34 1 3.6635 -3.1724 1.0920 35 1 4.5420 -2.0089 2.1131 36 1 5.2302 -4.5152 2.8257 37 1 7.9855 -4.7048 2.1722 38 1 7.0754 -5.9101 1.2301 39 1 5.1304 -6.8130 4.1190 40 1 3.1428 -9.8987 1.4911 41 1 8.0562 -7.8657 2.4212 42 1 9.1242 -6.6938 3.2328 43 1 9.0044 -8.7790 4.5476 44 1 7.2297 -8.6549 4.6093 45 1 7.3228 -5.7270 6.7571 46 1 6.2393 -6.8574 5.9104 47 1 8.0870 -4.8115 4.5978 48 1 6.3138 -4.7012 4.7148 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500587104.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:12 Heat of formation + Delta-G solvation = 10.315550 kcal Electronic energy + Delta-G solvation = -29793.621815 eV Core-core repulsion = 25692.596670 eV Total energy + Delta-G solvation = -4101.025146 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.51240 -41.15258 -40.18801 -37.40953 -35.83815 -35.09777 -33.96598 -33.80646 -32.59983 -31.99532 -31.63148 -29.15650 -27.92033 -25.83572 -25.44336 -24.38530 -23.37180 -23.22469 -21.74253 -21.02728 -20.04806 -19.79841 -18.43879 -17.95840 -17.68980 -17.10038 -17.01626 -16.78799 -16.60594 -16.23932 -15.98994 -15.68082 -15.53343 -15.11760 -14.93614 -14.60977 -14.37634 -14.16976 -14.05769 -13.93117 -13.60076 -13.49564 -13.23492 -13.03266 -12.96778 -12.89187 -12.68804 -12.59126 -12.17354 -12.08670 -11.94864 -11.77561 -11.75997 -11.48225 -11.25384 -11.17673 -11.03097 -10.80762 -10.37994 -10.06070 -9.88464 -9.29993 -7.95784 -5.30786 0.81432 1.36062 1.41975 1.42845 1.48555 1.52261 1.75445 2.39462 2.51134 3.04955 3.16877 3.35174 3.47598 3.72286 3.83265 3.88044 3.93360 4.10768 4.17237 4.20328 4.24376 4.29845 4.38980 4.43368 4.45588 4.56316 4.59185 4.66946 4.73521 4.78610 4.82125 4.86096 4.87327 5.02203 5.06634 5.09056 5.19324 5.20946 5.27326 5.29564 5.31866 5.61894 5.77874 5.85670 6.26377 6.34596 6.69546 7.12658 7.34750 7.36680 7.84331 8.04877 9.25671 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011755 B = 0.002983 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.370229 B = 9383.317503 C =10580.122211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.164 5.164 3 N -0.308 5.308 4 C -0.022 4.022 5 C -0.004 4.004 6 C -0.005 4.005 7 C -0.123 4.123 8 C 0.509 3.491 9 O -0.588 6.588 10 N -0.702 5.702 11 C 0.127 3.873 12 C 0.192 3.808 13 N -0.734 5.734 14 C -0.204 4.204 15 H 0.054 0.946 16 C -0.059 4.059 17 N -0.985 5.985 18 Si 0.943 3.057 19 H -0.287 1.287 20 H -0.241 1.241 21 H -0.307 1.307 22 C -0.150 4.150 23 C 0.075 3.925 24 O -0.395 6.395 25 C 0.059 3.941 26 C -0.146 4.146 27 N -0.310 5.310 28 H 0.101 0.899 29 H 0.111 0.889 30 H 0.121 0.879 31 H 0.227 0.773 32 H 0.108 0.892 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.117 0.883 36 H 0.406 0.594 37 H 0.071 0.929 38 H 0.027 0.973 39 H 0.367 0.633 40 H 0.253 0.747 41 H 0.054 0.946 42 H 0.081 0.919 43 H 0.098 0.902 44 H 0.037 0.963 45 H 0.118 0.882 46 H 0.039 0.961 47 H 0.094 0.906 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.078 20.205 5.911 21.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.066 5.066 3 N -0.150 5.150 4 C -0.204 4.204 5 C -0.166 4.166 6 C -0.045 4.045 7 C -0.163 4.163 8 C 0.297 3.703 9 O -0.470 6.470 10 N -0.352 5.352 11 C 0.001 3.999 12 C 0.102 3.898 13 N -0.378 5.378 14 C -0.335 4.335 15 H 0.072 0.928 16 C -0.250 4.250 17 N -0.636 5.636 18 Si 0.772 3.228 19 H -0.213 1.213 20 H -0.165 1.165 21 H -0.235 1.235 22 C -0.190 4.190 23 C -0.002 4.002 24 O -0.314 6.314 25 C -0.017 4.017 26 C -0.184 4.184 27 N -0.153 5.153 28 H 0.120 0.880 29 H 0.130 0.870 30 H 0.139 0.861 31 H 0.244 0.756 32 H 0.126 0.874 33 H 0.088 0.912 34 H 0.110 0.890 35 H 0.135 0.865 36 H 0.242 0.758 37 H 0.089 0.911 38 H 0.046 0.954 39 H 0.202 0.798 40 H 0.062 0.938 41 H 0.072 0.928 42 H 0.099 0.901 43 H 0.116 0.884 44 H 0.055 0.945 45 H 0.136 0.864 46 H 0.057 0.943 47 H 0.112 0.888 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.750 20.169 5.267 20.919 hybrid contribution -0.748 -0.900 0.126 1.177 sum -2.499 19.269 5.394 20.165 Atomic orbital electron populations 1.22502 0.68235 1.07237 1.06250 1.48383 1.10098 0.98817 1.49320 1.74005 1.04560 1.16598 1.19833 1.25181 0.95031 0.94546 1.05600 1.23301 0.92338 0.94841 1.06095 1.19532 0.92235 0.94624 0.98090 1.21530 0.95754 0.97221 1.01794 1.21059 0.87788 0.81104 0.80389 1.90650 1.45279 1.72583 1.38454 1.45743 1.25266 1.33759 1.30394 1.21586 0.87977 0.91643 0.98710 1.20007 0.85856 0.90637 0.93330 1.42783 1.18068 1.52052 1.24922 1.18714 1.04309 1.13344 0.97098 0.92818 1.25364 1.00433 0.98977 1.00260 1.69886 1.27292 1.31449 1.34988 0.85601 0.77932 0.79237 0.80063 1.21333 1.16525 1.23475 1.22431 0.98772 0.99122 0.98684 1.22398 1.01449 0.92056 0.84308 1.87830 1.47434 1.50724 1.45385 1.22678 0.89723 0.90686 0.98637 1.22373 1.04414 0.98203 0.93362 1.74022 1.04504 1.16603 1.20214 0.88036 0.87038 0.86077 0.75637 0.87396 0.91170 0.89050 0.86499 0.75768 0.91098 0.95421 0.79835 0.93805 0.92768 0.90060 0.88376 0.94482 0.86425 0.94307 0.88782 0.89270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.07 11.57 127.77 1.48 2.55 16 2 N -0.16 -3.50 4.35 -206.57 -0.90 -4.40 16 3 N -0.31 -6.74 12.05 -56.86 -0.69 -7.43 16 4 C -0.02 -0.43 12.15 85.11 1.03 0.60 16 5 C 0.00 -0.08 6.61 42.98 0.28 0.20 16 6 C -0.01 -0.12 5.10 29.85 0.15 0.04 16 7 C -0.12 -2.91 5.68 29.85 0.17 -2.74 16 8 C 0.51 15.85 7.83 87.66 0.69 16.53 16 9 O -0.59 -22.41 15.98 -3.02 -0.05 -22.46 16 10 N -0.70 -21.55 5.13 -463.05 -2.38 -23.93 16 11 C 0.13 4.30 4.36 86.38 0.38 4.68 16 12 C 0.19 6.13 0.41 3.72 0.00 6.13 16 13 N -0.73 -28.74 3.42 -302.81 -1.04 -29.78 16 14 C -0.20 -10.40 9.16 84.04 0.77 -9.63 16 15 H 0.05 3.15 7.00 -2.91 -0.02 3.13 16 16 C -0.06 -3.27 5.50 84.86 0.47 -2.80 16 17 N -0.99 -61.26 13.97 21.65 0.30 -60.95 16 18 Si 0.94 42.47 27.79 68.60 1.91 44.38 16 19 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 20 H -0.24 -9.17 6.45 99.48 0.64 -8.53 16 21 H -0.31 -14.59 7.11 99.48 0.71 -13.89 16 22 C -0.15 -4.89 4.80 30.75 0.15 -4.75 16 23 C 0.07 2.38 6.68 72.08 0.48 2.86 16 24 O -0.39 -11.68 10.77 -148.98 -1.60 -13.28 16 25 C 0.06 1.47 6.67 72.01 0.48 1.95 16 26 C -0.15 -3.49 4.80 30.69 0.15 -3.34 16 27 N -0.31 -7.86 12.04 -47.25 -0.57 -8.43 16 28 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.11 1.03 8.14 -2.38 -0.02 1.01 16 30 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.23 2.66 8.06 -2.91 -0.02 2.64 16 32 H 0.11 2.11 8.09 -2.39 -0.02 2.09 16 33 H 0.07 1.88 8.10 -2.38 -0.02 1.86 16 34 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.41 11.31 7.41 -92.71 -0.69 10.62 16 37 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.03 1.17 7.46 -2.39 -0.02 1.15 16 39 H 0.37 13.74 4.63 -92.70 -0.43 13.31 16 40 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 41 H 0.05 2.08 7.19 -2.39 -0.02 2.06 16 42 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 43 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 44 H 0.04 1.39 7.75 -2.39 -0.02 1.37 16 45 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 46 H 0.04 1.06 7.14 -2.39 -0.02 1.05 16 47 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 48 H 0.09 1.83 7.36 -2.39 -0.02 1.81 16 Total: -1.00 -76.14 387.42 1.47 -74.67 By element: Atomic # 1 Polarization: 39.52 SS G_CDS: -0.20 Total: 39.33 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: 6.68 Total: 12.29 kcal Atomic # 7 Polarization: -129.65 SS G_CDS: -5.26 Total: -134.91 kcal Atomic # 8 Polarization: -34.09 SS G_CDS: -1.65 Total: -35.74 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 1.91 Total: 44.38 kcal Total: -76.14 1.47 -74.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500587104.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.984 kcal (2) G-P(sol) polarization free energy of solvation -76.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds