Wall clock time and date at job start Tue Mar 31 2020 21:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.37357 * 125.83267 * 2 1 4 4 N 1.29403 * 108.82835 * 179.87793 * 3 2 1 5 5 N 1.40172 * 108.13750 * 0.38362 * 4 3 2 6 6 C 1.46504 * 126.34690 * 179.75719 * 5 4 3 7 7 C 1.53005 * 109.47066 * 269.99995 * 6 5 4 8 8 C 1.50699 * 109.47017 * 180.02562 * 7 6 5 9 9 O 1.21280 * 120.00130 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99932 * 180.02562 * 8 7 6 11 11 C 1.47025 * 125.64921 * 0.02562 * 10 8 7 12 12 C 1.54325 * 107.27080 * 181.02433 * 11 10 8 13 13 C 1.55147 * 102.94128 * 22.19487 * 12 11 10 14 14 H 1.08995 * 111.00820 * 82.57289 * 13 12 11 15 15 C 1.53005 * 111.00235 * 206.38607 * 13 12 11 16 16 C 1.53003 * 109.46919 * 293.54441 * 15 13 12 17 17 N 1.46504 * 109.46815 * 180.02562 * 16 15 13 18 18 C 1.36936 * 119.99831 * 180.02562 * 17 16 15 19 19 H 1.08004 * 120.00172 * 359.97438 * 18 17 16 20 20 C 1.38809 * 120.00293 * 180.02562 * 18 17 16 21 21 N 1.31626 * 119.99614 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00244 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47202 * 90.00023 * 22 20 18 24 24 H 1.48502 * 109.47276 * 209.99835 * 22 20 18 25 25 H 1.48497 * 109.47334 * 329.99763 * 22 20 18 26 26 C 1.47424 * 125.64986 * 179.72074 * 10 8 7 27 27 C 1.34815 * 125.82983 * 180.31630 * 2 1 3 28 28 O 1.21815 * 126.30582 * 359.92617 * 27 2 1 29 29 H 1.09001 * 109.47060 * 269.69069 * 1 2 3 30 30 H 1.09004 * 109.47073 * 29.68557 * 1 2 3 31 31 H 1.09000 * 109.47212 * 149.68640 * 1 2 3 32 32 H 1.08000 * 125.58963 * 0.04218 * 3 2 1 33 33 H 1.08997 * 109.47171 * 30.00285 * 6 5 4 34 34 H 1.08998 * 109.47066 * 150.00332 * 6 5 4 35 35 H 1.08997 * 109.47363 * 300.00173 * 7 6 5 36 36 H 1.08998 * 109.46903 * 60.00237 * 7 6 5 37 37 H 1.09004 * 109.88326 * 300.44329 * 11 10 8 38 38 H 1.09001 * 109.87918 * 61.44896 * 11 10 8 39 39 H 1.09004 * 110.71638 * 140.55927 * 12 11 10 40 40 H 1.09001 * 110.71546 * 263.82955 * 12 11 10 41 41 H 1.08996 * 109.47021 * 53.54554 * 15 13 12 42 42 H 1.09001 * 109.46754 * 173.54576 * 15 13 12 43 43 H 1.08996 * 109.47366 * 299.99901 * 16 15 13 44 44 H 1.08995 * 109.46906 * 60.00326 * 16 15 13 45 45 H 0.96996 * 120.00175 * 359.97438 * 17 16 15 46 46 H 0.96996 * 119.99575 * 179.97438 * 21 20 18 47 47 H 1.09003 * 110.36109 * 274.74788 * 26 10 8 48 48 H 1.09001 * 110.36735 * 37.06294 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2692 1.1136 0.0000 4 7 3.5066 0.7352 0.0026 5 7 3.5344 -0.6663 -0.0045 6 6 4.7313 -1.5110 -0.0095 7 6 5.1472 -1.7978 -1.4537 8 6 6.3781 -2.6672 -1.4588 9 8 6.8736 -3.0229 -0.4105 10 7 6.9282 -3.0495 -2.6282 11 6 6.4331 -2.6919 -3.9656 12 6 7.3597 -3.3734 -4.9946 13 6 7.9861 -4.5366 -4.1812 14 1 7.3178 -5.3972 -4.1520 15 6 9.3534 -4.9267 -4.7462 16 6 9.1761 -5.5252 -6.1431 17 7 10.4853 -5.8993 -6.6838 18 6 10.5768 -6.4586 -7.9304 19 1 9.6838 -6.6243 -8.5148 20 6 11.8172 -6.8136 -8.4425 21 7 12.9055 -6.6121 -7.7301 22 14 11.9419 -7.5772 -10.1427 23 1 12.1074 -6.5044 -11.1563 24 1 13.1131 -8.4889 -10.1912 25 1 10.7045 -8.3452 -10.4324 26 6 8.1298 -3.8904 -2.7783 27 6 2.2542 -1.0930 -0.0060 28 8 1.8806 -2.2524 -0.0112 29 1 -0.3633 -0.0055 1.0277 30 1 -0.3633 0.8928 -0.5090 31 1 -0.3634 -0.8872 -0.5187 32 1 1.9251 2.1373 0.0006 33 1 5.5416 -0.9960 0.5066 34 1 4.5153 -2.4502 0.4997 35 1 4.3369 -2.3127 -1.9697 36 1 5.3633 -0.8585 -1.9628 37 1 5.4118 -3.0514 -4.0912 38 1 6.4637 -1.6100 -4.0951 39 1 6.7841 -3.7577 -5.8367 40 1 8.1306 -2.6826 -5.3361 41 1 9.9870 -4.0419 -4.8077 42 1 9.8201 -5.6631 -4.0919 43 1 8.5426 -6.4100 -6.0816 44 1 8.7094 -4.7888 -6.7972 45 1 11.2874 -5.7501 -6.1591 46 1 13.7722 -6.8605 -8.0879 47 1 9.0300 -3.2775 -2.7307 48 1 8.1529 -4.6602 -2.0070 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501597033.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:26 Heat of formation + Delta-G solvation = 20.938665 kcal Electronic energy + Delta-G solvation = -28112.916877 eV Core-core repulsion = 24012.352384 eV Total energy + Delta-G solvation = -4100.564493 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.84288 -40.29827 -38.05904 -37.64672 -36.07145 -35.15875 -33.33639 -32.90100 -31.02059 -30.24986 -29.56735 -28.09737 -27.34044 -25.23730 -23.76314 -23.07153 -22.64722 -21.62858 -21.33803 -20.14984 -19.31423 -18.22091 -17.31429 -17.14175 -17.06978 -16.64150 -16.17916 -15.99654 -15.68169 -15.24191 -14.72614 -14.58186 -14.30380 -14.21759 -13.77535 -13.53241 -13.37584 -13.31337 -13.19202 -13.08967 -12.85373 -12.62899 -12.59820 -12.32192 -12.17138 -11.68792 -11.63472 -11.30934 -11.06932 -10.81805 -10.66732 -10.66337 -10.59211 -10.48406 -10.32148 -10.09337 -9.98546 -9.67723 -9.00793 -8.86197 -8.81472 -6.90816 -5.75498 -3.04204 1.29130 1.48349 2.24156 2.40054 2.58896 2.86882 3.44057 3.49005 3.50998 3.94776 4.16880 4.28428 4.41222 4.45603 4.49797 4.59170 4.65783 4.68661 4.74495 4.84433 4.94889 5.01401 5.08253 5.23998 5.26633 5.36397 5.41164 5.47743 5.55346 5.61749 5.67214 5.74484 5.80090 5.84339 5.89702 6.06461 6.08788 6.11529 6.25396 6.36606 6.39837 6.84530 6.89369 7.16383 7.30740 7.61521 7.70460 7.91569 8.43660 9.54489 10.13283 10.47482 11.47483 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.030420 B = 0.001553 C = 0.001520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.239130 B =18023.068887 C =18415.248721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.563 5.563 3 C 0.253 3.747 4 N -0.280 5.280 5 N -0.451 5.451 6 C 0.177 3.823 7 C -0.155 4.155 8 C 0.536 3.464 9 O -0.543 6.543 10 N -0.616 5.616 11 C 0.098 3.902 12 C -0.127 4.127 13 C -0.094 4.094 14 H 0.085 0.915 15 C -0.116 4.116 16 C 0.155 3.845 17 N -0.735 5.735 18 C -0.240 4.240 19 H 0.070 0.930 20 C -0.015 4.015 21 N -0.934 5.934 22 Si 0.907 3.093 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.109 3.891 27 C 0.642 3.358 28 O -0.551 6.551 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.231 0.769 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.017 0.983 44 H 0.019 0.981 45 H 0.383 0.617 46 H 0.255 0.745 47 H 0.072 0.928 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.236 19.982 16.531 36.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.292 5.292 3 C -0.046 4.046 4 N -0.101 5.101 5 N -0.272 5.272 6 C 0.056 3.944 7 C -0.196 4.196 8 C 0.324 3.676 9 O -0.420 6.420 10 N -0.350 5.350 11 C -0.025 4.025 12 C -0.165 4.165 13 C -0.114 4.114 14 H 0.104 0.896 15 C -0.154 4.154 16 C 0.027 3.973 17 N -0.379 5.379 18 C -0.371 4.371 19 H 0.088 0.912 20 C -0.211 4.211 21 N -0.582 5.582 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.013 4.013 27 C 0.341 3.659 28 O -0.424 6.424 29 H 0.092 0.908 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.247 0.753 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.116 0.884 36 H 0.119 0.881 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.105 0.895 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.035 0.965 44 H 0.037 0.963 45 H 0.217 0.783 46 H 0.065 0.935 47 H 0.090 0.910 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -25.301 19.151 17.018 36.007 hybrid contribution -0.447 -0.417 -0.974 1.150 sum -25.747 18.734 16.044 35.655 Atomic orbital electron populations 1.21841 0.74085 1.04819 1.03640 1.45969 1.08980 1.06698 1.67601 1.25967 0.85829 0.94791 0.98036 1.77037 1.18176 0.91995 1.22871 1.49027 1.06217 1.03115 1.68852 1.21194 0.83381 0.93768 0.96044 1.22009 0.97026 1.01247 0.99300 1.19891 0.84700 0.80567 0.82486 1.90735 1.63862 1.56840 1.30612 1.48517 1.29412 1.51404 1.05669 1.22145 0.98537 0.99862 0.81934 1.22740 0.98949 0.97598 0.97195 1.22380 0.98494 0.97522 0.92982 0.89646 1.21668 0.94447 1.01314 0.97954 1.20624 0.89583 0.95995 0.91094 1.42375 1.02764 1.74689 1.18051 1.19237 0.92756 1.32415 0.92699 0.91213 1.24750 0.95471 1.02214 0.98645 1.69665 0.97401 1.53743 1.37424 0.86183 0.77036 0.78735 0.84195 1.21738 1.21755 1.20786 1.22429 0.87118 0.93872 0.97885 1.16824 0.82164 0.85159 0.81748 1.91116 1.77670 1.15177 1.58408 0.90809 0.89231 0.89338 0.75268 0.87683 0.87714 0.88382 0.88067 0.91399 0.91362 0.89530 0.89961 0.91563 0.91471 0.96529 0.96275 0.78308 0.93524 0.90957 0.90246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.23 11.05 59.85 0.66 0.90 16 2 N -0.56 -3.44 3.14 -130.10 -0.41 -3.85 16 3 C 0.25 1.06 12.66 -89.12 -1.13 -0.07 16 4 N -0.28 -2.18 12.53 29.87 0.37 -1.80 16 5 N -0.45 -4.38 3.63 -65.12 -0.24 -4.62 16 6 C 0.18 1.73 5.68 -4.04 -0.02 1.71 16 7 C -0.15 -1.41 5.22 -27.88 -0.15 -1.56 16 8 C 0.54 6.46 7.85 -10.99 -0.09 6.37 16 9 O -0.54 -8.34 16.24 5.56 0.09 -8.25 16 10 N -0.62 -7.01 3.32 -170.38 -0.57 -7.58 16 11 C 0.10 0.88 6.48 -3.06 -0.02 0.86 16 12 C -0.13 -1.31 5.59 -24.90 -0.14 -1.45 16 13 C -0.09 -1.14 3.08 -88.36 -0.27 -1.42 16 14 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 15 C -0.12 -1.77 4.84 -26.73 -0.13 -1.90 16 16 C 0.15 3.02 6.11 -4.04 -0.02 3.00 16 17 N -0.73 -18.73 5.60 -59.91 -0.34 -19.07 16 18 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 19 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 20 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 21 N -0.93 -28.48 13.06 55.49 0.72 -27.75 16 22 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 26 C 0.11 1.33 6.38 -2.41 -0.02 1.31 16 27 C 0.64 6.79 8.60 -86.74 -0.75 6.04 16 28 O -0.55 -7.80 17.71 5.09 0.09 -7.71 16 29 H 0.07 0.11 8.14 -51.93 -0.42 -0.31 16 30 H 0.09 -0.08 8.14 -51.93 -0.42 -0.50 16 31 H 0.09 0.32 8.08 -51.93 -0.42 -0.10 16 32 H 0.23 -0.31 8.06 -52.49 -0.42 -0.73 16 33 H 0.10 0.99 8.10 -51.93 -0.42 0.57 16 34 H 0.10 1.14 8.06 -51.93 -0.42 0.72 16 35 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.09 0.85 8.13 -51.93 -0.42 0.43 16 40 H 0.08 0.88 8.01 -51.93 -0.42 0.47 16 41 H 0.07 1.02 8.11 -51.93 -0.42 0.60 16 42 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.02 0.37 7.51 -51.93 -0.39 -0.02 16 45 H 0.38 10.27 7.67 -40.82 -0.31 9.96 16 46 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 47 H 0.07 0.89 8.04 -51.93 -0.42 0.47 16 48 H 0.08 1.04 8.03 -51.93 -0.42 0.62 16 LS Contribution 402.36 15.07 6.06 6.06 Total: -1.00 -38.31 402.36 -9.37 -47.68 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -7.83 Total: 3.05 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: -2.31 Total: 6.33 kcal Atomic # 7 Polarization: -64.22 SS G_CDS: -0.45 Total: -64.66 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: 0.18 Total: -15.96 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -38.31 -9.37 -47.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501597033.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.622 kcal (2) G-P(sol) polarization free energy of solvation -38.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds