Wall clock time and date at job start Tue Mar 31 2020 21:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.37357 * 125.83267 * 2 1 4 4 N 1.29403 * 108.82835 * 179.87793 * 3 2 1 5 5 N 1.40172 * 108.13750 * 0.38362 * 4 3 2 6 6 C 1.46504 * 126.34690 * 179.75719 * 5 4 3 7 7 C 1.53005 * 109.47066 * 269.99995 * 6 5 4 8 8 C 1.50699 * 109.47017 * 180.02562 * 7 6 5 9 9 O 1.21280 * 120.00130 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99932 * 180.02562 * 8 7 6 11 11 C 1.47025 * 125.64921 * 0.02562 * 10 8 7 12 12 C 1.54325 * 107.27080 * 181.02433 * 11 10 8 13 13 C 1.55147 * 102.94128 * 22.19487 * 12 11 10 14 14 H 1.08995 * 111.00820 * 82.57289 * 13 12 11 15 15 C 1.53005 * 111.00235 * 206.38607 * 13 12 11 16 16 C 1.53003 * 109.46919 * 293.54441 * 15 13 12 17 17 N 1.46504 * 109.46815 * 180.02562 * 16 15 13 18 18 C 1.36936 * 119.99831 * 180.02562 * 17 16 15 19 19 H 1.08004 * 120.00172 * 359.97438 * 18 17 16 20 20 C 1.38809 * 120.00293 * 180.02562 * 18 17 16 21 21 N 1.31626 * 119.99614 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00244 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47202 * 90.00023 * 22 20 18 24 24 H 1.48502 * 109.47276 * 209.99835 * 22 20 18 25 25 H 1.48497 * 109.47334 * 329.99763 * 22 20 18 26 26 C 1.47424 * 125.64986 * 179.72074 * 10 8 7 27 27 C 1.34815 * 125.82983 * 180.31630 * 2 1 3 28 28 O 1.21815 * 126.30582 * 359.92617 * 27 2 1 29 29 H 1.09001 * 109.47060 * 269.69069 * 1 2 3 30 30 H 1.09004 * 109.47073 * 29.68557 * 1 2 3 31 31 H 1.09000 * 109.47212 * 149.68640 * 1 2 3 32 32 H 1.08000 * 125.58963 * 0.04218 * 3 2 1 33 33 H 1.08997 * 109.47171 * 30.00285 * 6 5 4 34 34 H 1.08998 * 109.47066 * 150.00332 * 6 5 4 35 35 H 1.08997 * 109.47363 * 300.00173 * 7 6 5 36 36 H 1.08998 * 109.46903 * 60.00237 * 7 6 5 37 37 H 1.09004 * 109.88326 * 300.44329 * 11 10 8 38 38 H 1.09001 * 109.87918 * 61.44896 * 11 10 8 39 39 H 1.09004 * 110.71638 * 140.55927 * 12 11 10 40 40 H 1.09001 * 110.71546 * 263.82955 * 12 11 10 41 41 H 1.08996 * 109.47021 * 53.54554 * 15 13 12 42 42 H 1.09001 * 109.46754 * 173.54576 * 15 13 12 43 43 H 1.08996 * 109.47366 * 299.99901 * 16 15 13 44 44 H 1.08995 * 109.46906 * 60.00326 * 16 15 13 45 45 H 0.96996 * 120.00175 * 359.97438 * 17 16 15 46 46 H 0.96996 * 119.99575 * 179.97438 * 21 20 18 47 47 H 1.09003 * 110.36109 * 274.74788 * 26 10 8 48 48 H 1.09001 * 110.36735 * 37.06294 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2692 1.1136 0.0000 4 7 3.5066 0.7352 0.0026 5 7 3.5344 -0.6663 -0.0045 6 6 4.7313 -1.5110 -0.0095 7 6 5.1472 -1.7978 -1.4537 8 6 6.3781 -2.6672 -1.4588 9 8 6.8736 -3.0229 -0.4105 10 7 6.9282 -3.0495 -2.6282 11 6 6.4331 -2.6919 -3.9656 12 6 7.3597 -3.3734 -4.9946 13 6 7.9861 -4.5366 -4.1812 14 1 7.3178 -5.3972 -4.1520 15 6 9.3534 -4.9267 -4.7462 16 6 9.1761 -5.5252 -6.1431 17 7 10.4853 -5.8993 -6.6838 18 6 10.5768 -6.4586 -7.9304 19 1 9.6838 -6.6243 -8.5148 20 6 11.8172 -6.8136 -8.4425 21 7 12.9055 -6.6121 -7.7301 22 14 11.9419 -7.5772 -10.1427 23 1 12.1074 -6.5044 -11.1563 24 1 13.1131 -8.4889 -10.1912 25 1 10.7045 -8.3452 -10.4324 26 6 8.1298 -3.8904 -2.7783 27 6 2.2542 -1.0930 -0.0060 28 8 1.8806 -2.2524 -0.0112 29 1 -0.3633 -0.0055 1.0277 30 1 -0.3633 0.8928 -0.5090 31 1 -0.3634 -0.8872 -0.5187 32 1 1.9251 2.1373 0.0006 33 1 5.5416 -0.9960 0.5066 34 1 4.5153 -2.4502 0.4997 35 1 4.3369 -2.3127 -1.9697 36 1 5.3633 -0.8585 -1.9628 37 1 5.4118 -3.0514 -4.0912 38 1 6.4637 -1.6100 -4.0951 39 1 6.7841 -3.7577 -5.8367 40 1 8.1306 -2.6826 -5.3361 41 1 9.9870 -4.0419 -4.8077 42 1 9.8201 -5.6631 -4.0919 43 1 8.5426 -6.4100 -6.0816 44 1 8.7094 -4.7888 -6.7972 45 1 11.2874 -5.7501 -6.1591 46 1 13.7722 -6.8605 -8.0879 47 1 9.0300 -3.2775 -2.7307 48 1 8.1529 -4.6602 -2.0070 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501597033.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:24 Heat of formation + Delta-G solvation = -4.645588 kcal Electronic energy + Delta-G solvation = -28114.026293 eV Core-core repulsion = 24012.352384 eV Total energy + Delta-G solvation = -4101.673909 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.41154 -41.24697 -39.07811 -38.42986 -36.86334 -36.65073 -34.61329 -33.81340 -32.63038 -31.01961 -30.61615 -29.00484 -28.18551 -26.26575 -25.25625 -23.97421 -23.32157 -22.98146 -22.10129 -21.24753 -20.23378 -19.14273 -18.86179 -17.99171 -17.78996 -17.44701 -16.98151 -16.76612 -16.65999 -16.46909 -16.03931 -15.46369 -15.34919 -15.29093 -15.08653 -14.67038 -14.50250 -14.33145 -14.06543 -13.82304 -13.66818 -13.49587 -13.30148 -13.22352 -13.07307 -12.88588 -12.86710 -12.76013 -12.45938 -12.33463 -12.18151 -11.96255 -11.64579 -11.57211 -11.49673 -11.39863 -11.21525 -10.93718 -10.90586 -9.74612 -9.67447 -8.98970 -7.94860 -5.23853 0.70608 1.08528 1.46266 1.47868 1.49834 1.53688 1.58323 1.88579 2.28060 2.56755 3.31244 3.39117 3.44267 3.57559 3.63627 3.75279 3.81885 3.95564 4.11949 4.16722 4.25188 4.26657 4.29903 4.34848 4.46891 4.53761 4.58981 4.60362 4.62702 4.67907 4.78488 4.82775 4.83525 4.87247 4.94447 4.96416 5.06034 5.09754 5.19285 5.28935 5.38904 5.46455 5.50483 5.69062 6.27872 6.40576 6.62714 6.92123 6.98387 7.33651 8.11088 8.33005 9.28899 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.030420 B = 0.001553 C = 0.001520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.239130 B =18023.068887 C =18415.248721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.558 5.558 3 C 0.281 3.719 4 N -0.315 5.315 5 N -0.457 5.457 6 C 0.179 3.821 7 C -0.136 4.136 8 C 0.532 3.468 9 O -0.583 6.583 10 N -0.617 5.617 11 C 0.099 3.901 12 C -0.124 4.124 13 C -0.085 4.085 14 H 0.087 0.913 15 C -0.102 4.102 16 C 0.153 3.847 17 N -0.750 5.750 18 C -0.247 4.247 19 H 0.077 0.923 20 C -0.078 4.078 21 N -0.971 5.971 22 Si 0.975 3.025 23 H -0.285 1.285 24 H -0.296 1.296 25 H -0.269 1.269 26 C 0.110 3.890 27 C 0.624 3.376 28 O -0.601 6.601 29 H 0.083 0.917 30 H 0.133 0.867 31 H 0.071 0.929 32 H 0.289 0.711 33 H 0.104 0.896 34 H 0.083 0.917 35 H 0.102 0.898 36 H 0.121 0.879 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.057 0.943 43 H 0.016 0.984 44 H 0.031 0.969 45 H 0.373 0.627 46 H 0.251 0.749 47 H 0.071 0.929 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.746 22.468 15.535 39.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.286 5.286 3 C -0.016 4.016 4 N -0.137 5.137 5 N -0.277 5.277 6 C 0.058 3.942 7 C -0.177 4.177 8 C 0.321 3.679 9 O -0.464 6.464 10 N -0.350 5.350 11 C -0.022 4.022 12 C -0.162 4.162 13 C -0.105 4.105 14 H 0.105 0.895 15 C -0.140 4.140 16 C 0.027 3.973 17 N -0.393 5.393 18 C -0.379 4.379 19 H 0.095 0.905 20 C -0.270 4.270 21 N -0.622 5.622 22 Si 0.804 3.196 23 H -0.212 1.212 24 H -0.223 1.223 25 H -0.194 1.194 26 C -0.012 4.012 27 C 0.323 3.677 28 O -0.478 6.478 29 H 0.102 0.898 30 H 0.151 0.849 31 H 0.089 0.911 32 H 0.304 0.696 33 H 0.122 0.878 34 H 0.102 0.898 35 H 0.120 0.880 36 H 0.139 0.861 37 H 0.103 0.897 38 H 0.109 0.891 39 H 0.114 0.886 40 H 0.099 0.901 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.034 0.966 44 H 0.049 0.951 45 H 0.204 0.796 46 H 0.060 0.940 47 H 0.089 0.911 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -27.886 21.693 16.005 38.786 hybrid contribution 0.228 -1.104 -0.610 1.281 sum -27.658 20.589 15.395 37.761 Atomic orbital electron populations 1.22176 0.71834 1.06156 1.04751 1.46185 1.10205 1.05960 1.66206 1.27160 0.84374 0.96102 0.94008 1.77073 1.20339 0.90330 1.25930 1.48996 1.05728 1.04233 1.68733 1.21015 0.83684 0.93177 0.96356 1.21871 0.95424 1.01372 0.99045 1.20377 0.85125 0.80365 0.81984 1.90714 1.65156 1.58430 1.32094 1.48599 1.28970 1.50839 1.06572 1.22297 0.98810 1.01202 0.79925 1.22740 0.99171 0.96688 0.97558 1.22212 0.96642 0.98441 0.93211 0.89476 1.21490 0.96374 1.00658 0.95509 1.20803 0.87004 0.96251 0.93228 1.42639 1.04489 1.74695 1.17473 1.19673 0.93009 1.31485 0.93694 0.90500 1.25606 0.95265 1.03524 1.02598 1.69827 0.97693 1.55403 1.39236 0.85114 0.77068 0.77784 0.79632 1.21205 1.22267 1.19406 1.22305 0.87749 0.93786 0.97399 1.17159 0.82922 0.85540 0.82081 1.91059 1.78552 1.17401 1.60762 0.89822 0.84864 0.91057 0.69565 0.87772 0.89843 0.88002 0.86073 0.89730 0.89092 0.88575 0.90099 0.91678 0.92467 0.96574 0.95114 0.79581 0.94032 0.91086 0.91634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.20 11.05 127.77 1.41 1.61 16 2 N -0.56 -5.62 3.14 -683.66 -2.15 -7.77 16 3 C 0.28 1.36 12.66 179.82 2.28 3.64 16 4 N -0.32 -4.28 12.53 -59.42 -0.74 -5.03 16 5 N -0.46 -8.72 3.63 -478.01 -1.73 -10.45 16 6 C 0.18 3.61 5.68 86.38 0.49 4.10 16 7 C -0.14 -2.40 5.22 29.85 0.16 -2.24 16 8 C 0.53 12.76 7.85 87.66 0.69 13.45 16 9 O -0.58 -18.56 16.24 -3.03 -0.05 -18.61 16 10 N -0.62 -13.43 3.32 -811.34 -2.70 -16.12 16 11 C 0.10 1.54 6.48 86.73 0.56 2.10 16 12 C -0.12 -2.29 5.59 31.78 0.18 -2.11 16 13 C -0.09 -1.99 3.08 -9.33 -0.03 -2.02 16 14 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 15 C -0.10 -3.10 4.84 30.60 0.15 -2.95 16 16 C 0.15 5.90 6.11 86.38 0.53 6.43 16 17 N -0.75 -38.44 5.60 -343.45 -1.92 -40.37 16 18 C -0.25 -13.89 9.99 84.03 0.84 -13.06 16 19 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 20 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 21 N -0.97 -60.07 13.06 21.65 0.28 -59.78 16 22 Si 0.98 46.27 29.55 68.60 2.03 48.30 16 23 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 24 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 25 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 26 C 0.11 2.67 6.38 86.93 0.55 3.22 16 27 C 0.62 13.11 8.60 178.99 1.54 14.65 16 28 O -0.60 -17.77 17.71 -4.72 -0.08 -17.85 16 29 H 0.08 0.05 8.14 -2.39 -0.02 0.03 16 30 H 0.13 -0.86 8.14 -2.38 -0.02 -0.88 16 31 H 0.07 0.45 8.08 -2.39 -0.02 0.43 16 32 H 0.29 -2.47 8.06 -2.91 -0.02 -2.50 16 33 H 0.10 2.05 8.10 -2.39 -0.02 2.03 16 34 H 0.08 1.99 8.06 -2.39 -0.02 1.98 16 35 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 38 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.10 1.63 8.13 -2.39 -0.02 1.61 16 40 H 0.08 1.55 8.01 -2.39 -0.02 1.53 16 41 H 0.06 1.99 8.11 -2.39 -0.02 1.97 16 42 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.02 0.63 8.14 -2.39 -0.02 0.62 16 44 H 0.03 1.13 7.51 -2.39 -0.02 1.12 16 45 H 0.37 20.37 7.67 -92.71 -0.71 19.66 16 46 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 47 H 0.07 1.74 8.04 -2.39 -0.02 1.72 16 48 H 0.07 1.77 8.03 -2.39 -0.02 1.75 16 Total: -1.00 -86.44 402.36 2.99 -83.45 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: 0.25 Total: 21.45 kcal Atomic # 6 Polarization: 12.97 SS G_CDS: 9.81 Total: 22.78 kcal Atomic # 7 Polarization: -130.56 SS G_CDS: -8.96 Total: -139.52 kcal Atomic # 8 Polarization: -36.33 SS G_CDS: -0.13 Total: -36.46 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -86.44 2.99 -83.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501597033.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.806 kcal (2) G-P(sol) polarization free energy of solvation -86.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds