Wall clock time and date at job start Tue Mar 31 2020 21:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37365 * 125.83432 * 2 1 4 4 N 1.29396 * 108.82908 * 179.97438 * 3 2 1 5 5 N 1.40175 * 108.14242 * 0.02562 * 4 3 2 6 6 C 1.46501 * 126.35019 * 179.97438 * 5 4 3 7 7 C 1.53008 * 109.47180 * 269.97536 * 6 5 4 8 8 C 1.50691 * 109.46865 * 180.02562 * 7 6 5 9 9 O 1.21281 * 120.00368 * 359.97438 * 8 7 6 10 10 N 1.34781 * 119.99782 * 180.02562 * 8 7 6 11 11 C 1.47023 * 125.64587 * 359.68329 * 10 8 7 12 12 C 1.54340 * 107.26303 * 178.85419 * 11 10 8 13 13 C 1.55149 * 103.02137 * 338.14562 * 12 11 10 14 14 H 1.09004 * 111.03793 * 277.21446 * 13 12 11 15 15 C 1.53001 * 111.00560 * 153.38272 * 13 12 11 16 16 C 1.52999 * 109.47390 * 72.80113 * 15 13 12 17 17 N 1.46492 * 109.47384 * 180.02562 * 16 15 13 18 18 C 1.36937 * 120.00240 * 179.97438 * 17 16 15 19 19 H 1.07997 * 120.00213 * 0.02562 * 18 17 16 20 20 C 1.38812 * 120.00057 * 179.97438 * 18 17 16 21 21 N 1.31617 * 119.99727 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 120.00122 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.46741 * 90.00072 * 22 20 18 24 24 H 1.48497 * 109.47166 * 209.99872 * 22 20 18 25 25 H 1.48495 * 109.46817 * 330.00270 * 22 20 18 26 26 C 1.47423 * 125.64945 * 180.02562 * 10 8 7 27 27 C 1.34821 * 125.83315 * 180.02562 * 2 1 3 28 28 O 1.21811 * 126.30070 * 359.97438 * 27 2 1 29 29 H 1.09000 * 109.47054 * 269.99918 * 1 2 3 30 30 H 1.09002 * 109.46573 * 29.99820 * 1 2 3 31 31 H 1.08995 * 109.47026 * 149.99260 * 1 2 3 32 32 H 1.07999 * 125.58098 * 0.04209 * 3 2 1 33 33 H 1.09005 * 109.47092 * 29.97399 * 6 5 4 34 34 H 1.08996 * 109.47297 * 149.97531 * 6 5 4 35 35 H 1.08996 * 109.46524 * 300.00256 * 7 6 5 36 36 H 1.09004 * 109.46737 * 59.99767 * 7 6 5 37 37 H 1.09001 * 109.88442 * 298.40087 * 11 10 8 38 38 H 1.09003 * 109.87819 * 59.56982 * 11 10 8 39 39 H 1.08996 * 110.84776 * 219.67431 * 12 11 10 40 40 H 1.08996 * 110.66528 * 96.52650 * 12 11 10 41 41 H 1.09000 * 109.47405 * 192.80500 * 15 13 12 42 42 H 1.09006 * 109.46645 * 312.80140 * 15 13 12 43 43 H 1.09007 * 109.46797 * 300.00498 * 16 15 13 44 44 H 1.09000 * 109.47085 * 59.99952 * 16 15 13 45 45 H 0.97006 * 120.00041 * 359.97438 * 17 16 15 46 46 H 0.97001 * 119.99832 * 179.97438 * 21 20 18 47 47 H 1.08994 * 110.37007 * 322.92706 * 26 10 8 48 48 H 1.09001 * 110.36779 * 85.14017 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2692 1.1136 0.0000 4 7 3.5066 0.7352 0.0005 5 7 3.5344 -0.6663 0.0003 6 6 4.7313 -1.5110 0.0003 7 6 5.1477 -1.8054 -1.4423 8 6 6.3785 -2.6748 -1.4423 9 8 6.8742 -3.0242 -0.3921 10 7 6.9291 -3.0633 -2.6096 11 6 6.4304 -2.7185 -3.9490 12 6 7.3912 -3.3575 -4.9740 13 6 8.6926 -3.5603 -4.1541 14 1 9.2806 -2.6430 -4.1200 15 6 9.5201 -4.7179 -4.7162 16 6 10.1624 -4.2913 -6.0376 17 7 10.9543 -5.3999 -6.5761 18 6 11.6254 -5.2502 -7.7603 19 1 11.5713 -4.3147 -8.2972 20 6 12.3761 -6.3006 -8.2702 21 7 13.0215 -6.1565 -9.4082 22 14 12.4716 -7.9181 -7.3406 23 1 11.3738 -8.8121 -7.7890 24 1 13.7797 -8.5672 -7.6097 25 1 12.3368 -7.6607 -5.8844 26 6 8.1271 -3.9102 -2.7548 27 6 2.2543 -1.0930 -0.0005 28 8 1.8806 -2.2524 -0.0006 29 1 -0.3633 0.0000 1.0277 30 1 -0.3632 0.8900 -0.5138 31 1 -0.3633 -0.8899 -0.5139 32 1 1.9250 2.1373 0.0006 33 1 5.5415 -0.9933 0.5138 34 1 4.5151 -2.4475 0.5143 35 1 4.3376 -2.3231 -1.9558 36 1 5.3639 -0.8688 -1.9564 37 1 5.4242 -3.1156 -4.0834 38 1 6.4238 -1.6358 -4.0747 39 1 7.5653 -2.6850 -5.8140 40 1 7.0016 -4.3141 -5.3220 41 1 10.2997 -4.9870 -4.0034 42 1 8.8724 -5.5777 -4.8878 43 1 9.3828 -4.0223 -6.7504 44 1 10.8101 -3.4316 -5.8659 45 1 11.0032 -6.2402 -6.0937 46 1 13.5464 -6.8903 -9.7644 47 1 8.8563 -3.6718 -1.9805 48 1 7.8546 -4.9644 -2.7065 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501597037.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:31 Heat of formation + Delta-G solvation = 24.911697 kcal Electronic energy + Delta-G solvation = -28155.810352 eV Core-core repulsion = 24055.418143 eV Total energy + Delta-G solvation = -4100.392209 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.86497 -40.35734 -38.12969 -37.67245 -36.10056 -35.35734 -33.37900 -32.93741 -31.24415 -30.33057 -29.74539 -28.20750 -27.57372 -25.31995 -23.70558 -23.04321 -22.67018 -21.56691 -21.27620 -20.31367 -19.40762 -18.25528 -17.58232 -17.34301 -17.12760 -16.63228 -16.35432 -16.02032 -15.70438 -15.17994 -14.82904 -14.55308 -14.37694 -14.25304 -14.04207 -13.66494 -13.38642 -13.30587 -13.27343 -13.00713 -12.83734 -12.71826 -12.65105 -12.36700 -12.26802 -11.81291 -11.70549 -11.60192 -11.28865 -10.88884 -10.71728 -10.68929 -10.62293 -10.53278 -10.42325 -10.13322 -10.07998 -9.59071 -9.03229 -8.89364 -8.87303 -7.22921 -5.76811 -3.12304 1.26818 1.46288 2.21604 2.35082 2.55975 2.82058 3.38106 3.41075 3.45941 3.92405 4.12505 4.25550 4.36983 4.42922 4.43337 4.59555 4.62037 4.64150 4.66942 4.76459 4.93119 4.97614 5.00254 5.20031 5.21354 5.29296 5.34755 5.43816 5.46698 5.50003 5.58178 5.69295 5.72224 5.73338 5.80819 5.93900 5.99100 6.04430 6.08417 6.13102 6.28714 6.72090 6.76320 7.14152 7.24834 7.59060 7.86391 7.99579 8.42349 9.21718 9.94245 10.13955 11.41615 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.031438 B = 0.001599 C = 0.001582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.427510 B =17506.822090 C =17697.259332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.563 5.563 3 C 0.253 3.747 4 N -0.280 5.280 5 N -0.451 5.451 6 C 0.177 3.823 7 C -0.155 4.155 8 C 0.536 3.464 9 O -0.542 6.542 10 N -0.616 5.616 11 C 0.098 3.902 12 C -0.128 4.128 13 C -0.094 4.094 14 H 0.088 0.912 15 C -0.120 4.120 16 C 0.159 3.841 17 N -0.758 5.758 18 C -0.245 4.245 19 H 0.090 0.910 20 C 0.004 3.996 21 N -0.935 5.935 22 Si 0.885 3.115 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.277 1.277 26 C 0.109 3.891 27 C 0.642 3.358 28 O -0.551 6.551 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.231 0.769 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.028 0.972 44 H 0.025 0.975 45 H 0.361 0.639 46 H 0.259 0.741 47 H 0.080 0.920 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.776 17.841 20.214 38.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.292 5.292 3 C -0.046 4.046 4 N -0.101 5.101 5 N -0.272 5.272 6 C 0.056 3.944 7 C -0.196 4.196 8 C 0.324 3.676 9 O -0.420 6.420 10 N -0.350 5.350 11 C -0.025 4.025 12 C -0.166 4.166 13 C -0.113 4.113 14 H 0.106 0.894 15 C -0.158 4.158 16 C 0.032 3.968 17 N -0.403 5.403 18 C -0.375 4.375 19 H 0.107 0.893 20 C -0.192 4.192 21 N -0.583 5.583 22 Si 0.716 3.284 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.203 1.203 26 C -0.013 4.013 27 C 0.341 3.659 28 O -0.424 6.424 29 H 0.092 0.908 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.248 0.752 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.106 0.894 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.045 0.955 44 H 0.043 0.957 45 H 0.193 0.807 46 H 0.069 0.931 47 H 0.098 0.902 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -26.707 17.196 20.646 37.885 hybrid contribution -0.687 -1.266 0.348 1.482 sum -27.395 15.930 20.994 38.013 Atomic orbital electron populations 1.21841 0.74073 1.04840 1.03636 1.45972 1.08986 1.06696 1.67595 1.25974 0.85818 0.94799 0.97992 1.77039 1.18179 0.91957 1.22884 1.49022 1.06203 1.03131 1.68872 1.21191 0.83409 0.93757 0.96028 1.22011 0.96955 1.01264 0.99359 1.19900 0.84763 0.80453 0.82480 1.90736 1.63665 1.57213 1.30405 1.48507 1.29488 1.51316 1.05714 1.22146 0.98311 1.00207 0.81808 1.22755 0.94354 1.02171 0.97284 1.22327 0.95832 1.00158 0.93027 0.89402 1.21725 0.98984 0.96794 0.98317 1.20601 0.93368 0.91291 0.91573 1.42725 1.59306 1.12599 1.25719 1.19066 1.21940 1.00276 0.96206 0.89256 1.24682 0.99590 0.97914 0.97029 1.69704 1.36014 1.32301 1.20244 0.86530 0.77257 0.85032 0.79608 1.21090 1.21714 1.20310 1.22373 0.86466 0.94593 0.97888 1.16822 0.82164 0.85157 0.81740 1.91113 1.77678 1.15192 1.58434 0.90812 0.89214 0.89333 0.75247 0.87667 0.87741 0.88387 0.88001 0.91341 0.91247 0.89360 0.90059 0.91510 0.91588 0.95454 0.95668 0.80692 0.93070 0.90206 0.91113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.22 11.05 59.85 0.66 0.88 16 2 N -0.56 -3.33 3.14 -130.11 -0.41 -3.74 16 3 C 0.25 1.01 12.66 -89.12 -1.13 -0.11 16 4 N -0.28 -2.12 12.53 29.87 0.37 -1.75 16 5 N -0.45 -4.27 3.63 -65.12 -0.24 -4.51 16 6 C 0.18 1.68 5.68 -4.04 -0.02 1.65 16 7 C -0.15 -1.36 5.22 -27.88 -0.15 -1.50 16 8 C 0.54 6.22 7.85 -10.99 -0.09 6.13 16 9 O -0.54 -8.09 16.24 5.56 0.09 -8.00 16 10 N -0.62 -6.66 3.33 -170.50 -0.57 -7.22 16 11 C 0.10 0.83 6.49 -3.05 -0.02 0.81 16 12 C -0.13 -1.22 5.90 -24.89 -0.15 -1.37 16 13 C -0.09 -1.05 3.01 -88.46 -0.27 -1.32 16 14 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 15 C -0.12 -1.69 4.84 -26.73 -0.13 -1.82 16 16 C 0.16 2.93 6.16 -4.05 -0.02 2.91 16 17 N -0.76 -18.01 5.41 -59.91 -0.32 -18.33 16 18 C -0.25 -6.99 10.47 -15.06 -0.16 -7.14 16 19 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 20 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 21 N -0.93 -29.50 13.97 55.49 0.78 -28.73 16 22 Si 0.89 22.24 27.74 -169.99 -4.71 17.53 16 23 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 25 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 26 C 0.11 1.25 6.37 -2.52 -0.02 1.23 16 27 C 0.64 6.64 8.60 -86.73 -0.75 5.89 16 28 O -0.55 -7.67 17.71 5.09 0.09 -7.58 16 29 H 0.07 0.10 8.14 -51.93 -0.42 -0.32 16 30 H 0.09 -0.10 8.14 -51.93 -0.42 -0.52 16 31 H 0.09 0.30 8.08 -51.93 -0.42 -0.11 16 32 H 0.23 -0.34 8.06 -52.49 -0.42 -0.77 16 33 H 0.11 0.96 8.10 -51.93 -0.42 0.54 16 34 H 0.10 1.10 8.07 -51.93 -0.42 0.68 16 35 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.08 0.80 7.91 -51.93 -0.41 0.39 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.07 0.92 7.97 -51.93 -0.41 0.50 16 43 H 0.03 0.50 7.75 -51.93 -0.40 0.10 16 44 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.36 8.36 5.53 -40.82 -0.23 8.13 16 46 H 0.26 7.78 8.31 -40.82 -0.34 7.45 16 47 H 0.08 0.98 8.04 -51.93 -0.42 0.56 16 48 H 0.07 0.82 8.04 -51.93 -0.42 0.40 16 LS Contribution 399.54 15.07 6.02 6.02 Total: -1.00 -39.11 399.54 -9.01 -48.12 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -7.79 Total: 1.95 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: -2.32 Total: 6.25 kcal Atomic # 7 Polarization: -63.90 SS G_CDS: -0.39 Total: -64.28 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: 0.18 Total: -15.58 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.71 Total: 17.53 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -39.11 -9.01 -48.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501597037.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.032 kcal (2) G-P(sol) polarization free energy of solvation -39.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds