Wall clock time and date at job start Tue Mar 31 2020 21:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37365 * 125.83432 * 2 1 4 4 N 1.29396 * 108.82908 * 179.97438 * 3 2 1 5 5 N 1.40175 * 108.14242 * 0.02562 * 4 3 2 6 6 C 1.46501 * 126.35019 * 179.97438 * 5 4 3 7 7 C 1.53008 * 109.47180 * 269.97536 * 6 5 4 8 8 C 1.50691 * 109.46865 * 180.02562 * 7 6 5 9 9 O 1.21281 * 120.00368 * 359.97438 * 8 7 6 10 10 N 1.34781 * 119.99782 * 180.02562 * 8 7 6 11 11 C 1.47023 * 125.64587 * 359.68329 * 10 8 7 12 12 C 1.54340 * 107.26303 * 178.85419 * 11 10 8 13 13 C 1.55149 * 103.02137 * 338.14562 * 12 11 10 14 14 H 1.09004 * 111.03793 * 277.21446 * 13 12 11 15 15 C 1.53001 * 111.00560 * 153.38272 * 13 12 11 16 16 C 1.52999 * 109.47390 * 72.80113 * 15 13 12 17 17 N 1.46492 * 109.47384 * 180.02562 * 16 15 13 18 18 C 1.36937 * 120.00240 * 179.97438 * 17 16 15 19 19 H 1.07997 * 120.00213 * 0.02562 * 18 17 16 20 20 C 1.38812 * 120.00057 * 179.97438 * 18 17 16 21 21 N 1.31617 * 119.99727 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 120.00122 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.46741 * 90.00072 * 22 20 18 24 24 H 1.48497 * 109.47166 * 209.99872 * 22 20 18 25 25 H 1.48495 * 109.46817 * 330.00270 * 22 20 18 26 26 C 1.47423 * 125.64945 * 180.02562 * 10 8 7 27 27 C 1.34821 * 125.83315 * 180.02562 * 2 1 3 28 28 O 1.21811 * 126.30070 * 359.97438 * 27 2 1 29 29 H 1.09000 * 109.47054 * 269.99918 * 1 2 3 30 30 H 1.09002 * 109.46573 * 29.99820 * 1 2 3 31 31 H 1.08995 * 109.47026 * 149.99260 * 1 2 3 32 32 H 1.07999 * 125.58098 * 0.04209 * 3 2 1 33 33 H 1.09005 * 109.47092 * 29.97399 * 6 5 4 34 34 H 1.08996 * 109.47297 * 149.97531 * 6 5 4 35 35 H 1.08996 * 109.46524 * 300.00256 * 7 6 5 36 36 H 1.09004 * 109.46737 * 59.99767 * 7 6 5 37 37 H 1.09001 * 109.88442 * 298.40087 * 11 10 8 38 38 H 1.09003 * 109.87819 * 59.56982 * 11 10 8 39 39 H 1.08996 * 110.84776 * 219.67431 * 12 11 10 40 40 H 1.08996 * 110.66528 * 96.52650 * 12 11 10 41 41 H 1.09000 * 109.47405 * 192.80500 * 15 13 12 42 42 H 1.09006 * 109.46645 * 312.80140 * 15 13 12 43 43 H 1.09007 * 109.46797 * 300.00498 * 16 15 13 44 44 H 1.09000 * 109.47085 * 59.99952 * 16 15 13 45 45 H 0.97006 * 120.00041 * 359.97438 * 17 16 15 46 46 H 0.97001 * 119.99832 * 179.97438 * 21 20 18 47 47 H 1.08994 * 110.37007 * 322.92706 * 26 10 8 48 48 H 1.09001 * 110.36779 * 85.14017 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2692 1.1136 0.0000 4 7 3.5066 0.7352 0.0005 5 7 3.5344 -0.6663 0.0003 6 6 4.7313 -1.5110 0.0003 7 6 5.1477 -1.8054 -1.4423 8 6 6.3785 -2.6748 -1.4423 9 8 6.8742 -3.0242 -0.3921 10 7 6.9291 -3.0633 -2.6096 11 6 6.4304 -2.7185 -3.9490 12 6 7.3912 -3.3575 -4.9740 13 6 8.6926 -3.5603 -4.1541 14 1 9.2806 -2.6430 -4.1200 15 6 9.5201 -4.7179 -4.7162 16 6 10.1624 -4.2913 -6.0376 17 7 10.9543 -5.3999 -6.5761 18 6 11.6254 -5.2502 -7.7603 19 1 11.5713 -4.3147 -8.2972 20 6 12.3761 -6.3006 -8.2702 21 7 13.0215 -6.1565 -9.4082 22 14 12.4716 -7.9181 -7.3406 23 1 11.3738 -8.8121 -7.7890 24 1 13.7797 -8.5672 -7.6097 25 1 12.3368 -7.6607 -5.8844 26 6 8.1271 -3.9102 -2.7548 27 6 2.2543 -1.0930 -0.0005 28 8 1.8806 -2.2524 -0.0006 29 1 -0.3633 0.0000 1.0277 30 1 -0.3632 0.8900 -0.5138 31 1 -0.3633 -0.8899 -0.5139 32 1 1.9250 2.1373 0.0006 33 1 5.5415 -0.9933 0.5138 34 1 4.5151 -2.4475 0.5143 35 1 4.3376 -2.3231 -1.9558 36 1 5.3639 -0.8688 -1.9564 37 1 5.4242 -3.1156 -4.0834 38 1 6.4238 -1.6358 -4.0747 39 1 7.5653 -2.6850 -5.8140 40 1 7.0016 -4.3141 -5.3220 41 1 10.2997 -4.9870 -4.0034 42 1 8.8724 -5.5777 -4.8878 43 1 9.3828 -4.0223 -6.7504 44 1 10.8101 -3.4316 -5.8659 45 1 11.0032 -6.2402 -6.0937 46 1 13.5464 -6.8903 -9.7644 47 1 8.8563 -3.6718 -1.9805 48 1 7.8546 -4.9644 -2.7065 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501597037.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:30 Heat of formation + Delta-G solvation = -1.831441 kcal Electronic energy + Delta-G solvation = -28156.970021 eV Core-core repulsion = 24055.418143 eV Total energy + Delta-G solvation = -4101.551879 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.41546 -41.24884 -39.08827 -38.43525 -37.01285 -36.66296 -34.62257 -33.83325 -32.96907 -31.07497 -30.70544 -29.18155 -28.22826 -26.24431 -25.06097 -23.95366 -23.28201 -22.95424 -22.11309 -21.31905 -20.28435 -19.60427 -18.88162 -17.97796 -17.79467 -17.44529 -17.00564 -16.77850 -16.64802 -16.43949 -16.00110 -15.75791 -15.43599 -15.32791 -14.79842 -14.66410 -14.51415 -14.37221 -14.16589 -13.98380 -13.67999 -13.50995 -13.49714 -13.23875 -13.19945 -12.93122 -12.88750 -12.81191 -12.48497 -12.40749 -12.06030 -11.89790 -11.74298 -11.56591 -11.52244 -11.40237 -11.22033 -10.95168 -10.93379 -9.74699 -9.67887 -9.28700 -8.02980 -5.36296 0.70400 1.08018 1.38512 1.41607 1.45968 1.49138 1.53197 1.88483 2.27672 2.48592 3.28463 3.30582 3.43624 3.51098 3.63096 3.67226 3.82045 3.92808 4.01027 4.11552 4.24734 4.26343 4.29863 4.34110 4.44910 4.53271 4.54029 4.57972 4.62586 4.66649 4.76173 4.82289 4.82813 4.86440 4.94089 4.96659 5.05935 5.09035 5.19107 5.28180 5.36517 5.44812 5.68548 5.76173 6.21424 6.39877 6.62251 6.91642 6.98131 7.08527 7.85655 8.03753 9.18499 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.031438 B = 0.001599 C = 0.001582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.427510 B =17506.822090 C =17697.259332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.558 5.558 3 C 0.281 3.719 4 N -0.315 5.315 5 N -0.458 5.458 6 C 0.179 3.821 7 C -0.137 4.137 8 C 0.533 3.467 9 O -0.583 6.583 10 N -0.617 5.617 11 C 0.099 3.901 12 C -0.126 4.126 13 C -0.085 4.085 14 H 0.090 0.910 15 C -0.107 4.107 16 C 0.155 3.845 17 N -0.762 5.762 18 C -0.237 4.237 19 H 0.057 0.943 20 C -0.065 4.065 21 N -0.984 5.984 22 Si 0.957 3.043 23 H -0.277 1.277 24 H -0.296 1.296 25 H -0.252 1.252 26 C 0.110 3.890 27 C 0.624 3.376 28 O -0.601 6.601 29 H 0.083 0.917 30 H 0.133 0.867 31 H 0.071 0.929 32 H 0.289 0.711 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.101 0.899 36 H 0.121 0.879 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.033 0.967 44 H 0.021 0.979 45 H 0.366 0.634 46 H 0.258 0.742 47 H 0.068 0.932 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.077 19.429 21.253 41.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.286 5.286 3 C -0.017 4.017 4 N -0.136 5.136 5 N -0.277 5.277 6 C 0.058 3.942 7 C -0.178 4.178 8 C 0.322 3.678 9 O -0.463 6.463 10 N -0.350 5.350 11 C -0.023 4.023 12 C -0.163 4.163 13 C -0.105 4.105 14 H 0.108 0.892 15 C -0.145 4.145 16 C 0.029 3.971 17 N -0.408 5.408 18 C -0.368 4.368 19 H 0.075 0.925 20 C -0.256 4.256 21 N -0.635 5.635 22 Si 0.784 3.216 23 H -0.203 1.203 24 H -0.223 1.223 25 H -0.176 1.176 26 C -0.013 4.013 27 C 0.323 3.677 28 O -0.478 6.478 29 H 0.102 0.898 30 H 0.151 0.849 31 H 0.090 0.910 32 H 0.304 0.696 33 H 0.122 0.878 34 H 0.102 0.898 35 H 0.119 0.881 36 H 0.139 0.861 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.114 0.886 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.051 0.949 44 H 0.039 0.961 45 H 0.199 0.801 46 H 0.067 0.933 47 H 0.087 0.913 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -29.068 18.855 21.703 40.884 hybrid contribution -0.054 -1.580 0.006 1.581 sum -29.122 17.275 21.709 40.222 Atomic orbital electron populations 1.22172 0.71843 1.06139 1.04764 1.46190 1.10206 1.05971 1.66211 1.27159 0.84381 0.96105 0.94014 1.77073 1.20324 0.90340 1.25913 1.49001 1.05738 1.04226 1.68736 1.21021 0.83672 0.93168 0.96377 1.21872 0.95478 1.01385 0.99046 1.20347 0.85155 0.80262 0.82036 1.90715 1.64951 1.58794 1.31871 1.48590 1.29105 1.50784 1.06512 1.22293 0.98552 1.01491 0.79952 1.22762 0.93482 1.02544 0.97556 1.22173 0.96258 0.98960 0.93091 0.89198 1.21571 0.99133 0.98017 0.95826 1.20794 0.92890 0.89719 0.93684 1.42780 1.59401 1.14245 1.24399 1.19069 1.21511 0.98877 0.97334 0.92506 1.25535 0.99811 1.02109 0.98194 1.69888 1.37557 1.33572 1.22436 0.85385 0.76921 0.79849 0.79484 1.20303 1.22293 1.17642 1.22276 0.86716 0.94738 0.97550 1.17155 0.82922 0.85533 0.82076 1.91056 1.78555 1.17394 1.60778 0.89815 0.84897 0.91042 0.69590 0.87768 0.89814 0.88052 0.86136 0.89827 0.89220 0.88574 0.90138 0.91625 0.90992 0.94939 0.96078 0.80144 0.93347 0.91317 0.91242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.17 11.05 127.77 1.41 1.59 16 2 N -0.56 -5.43 3.14 -683.69 -2.15 -7.58 16 3 C 0.28 1.28 12.66 179.82 2.28 3.55 16 4 N -0.32 -4.16 12.53 -59.42 -0.74 -4.91 16 5 N -0.46 -8.49 3.63 -478.01 -1.73 -10.22 16 6 C 0.18 3.49 5.68 86.38 0.49 3.98 16 7 C -0.14 -2.30 5.22 29.85 0.16 -2.15 16 8 C 0.53 12.13 7.85 87.65 0.69 12.81 16 9 O -0.58 -17.77 16.24 -3.03 -0.05 -17.81 16 10 N -0.62 -12.48 3.33 -811.73 -2.70 -15.18 16 11 C 0.10 1.41 6.49 86.73 0.56 1.98 16 12 C -0.13 -2.10 5.90 31.79 0.19 -1.92 16 13 C -0.09 -1.76 3.01 -9.40 -0.03 -1.79 16 14 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 15 C -0.11 -2.82 4.84 30.59 0.15 -2.68 16 16 C 0.15 5.54 6.16 86.38 0.53 6.07 16 17 N -0.76 -35.42 5.41 -343.47 -1.86 -37.28 16 18 C -0.24 -13.61 10.47 84.03 0.88 -12.73 16 19 H 0.06 3.56 8.06 -2.91 -0.02 3.54 16 20 C -0.07 -3.86 5.50 84.86 0.47 -3.40 16 21 N -0.98 -63.43 13.97 21.65 0.30 -63.13 16 22 Si 0.96 45.68 27.74 68.60 1.90 47.59 16 23 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 24 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 25 H -0.25 -10.85 6.52 99.48 0.65 -10.21 16 26 C 0.11 2.40 6.37 86.86 0.55 2.95 16 27 C 0.62 12.82 8.60 178.99 1.54 14.36 16 28 O -0.60 -17.43 17.71 -4.70 -0.08 -17.51 16 29 H 0.08 0.03 8.14 -2.39 -0.02 0.01 16 30 H 0.13 -0.89 8.14 -2.39 -0.02 -0.91 16 31 H 0.07 0.43 8.08 -2.39 -0.02 0.41 16 32 H 0.29 -2.53 8.06 -2.91 -0.02 -2.55 16 33 H 0.10 1.98 8.10 -2.38 -0.02 1.96 16 34 H 0.08 1.93 8.07 -2.39 -0.02 1.91 16 35 H 0.10 1.66 8.14 -2.39 -0.02 1.65 16 36 H 0.12 1.57 8.14 -2.38 -0.02 1.56 16 37 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.08 1.39 7.91 -2.39 -0.02 1.37 16 41 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.07 1.83 7.97 -2.38 -0.02 1.82 16 43 H 0.03 1.15 7.75 -2.38 -0.02 1.13 16 44 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.37 16.16 5.53 -92.70 -0.51 15.65 16 46 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 47 H 0.07 1.66 8.04 -2.39 -0.02 1.64 16 48 H 0.07 1.54 8.04 -2.39 -0.02 1.52 16 Total: -1.00 -89.04 399.54 3.14 -85.90 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: 0.38 Total: 17.51 kcal Atomic # 6 Polarization: 12.77 SS G_CDS: 9.86 Total: 22.63 kcal Atomic # 7 Polarization: -129.42 SS G_CDS: -8.88 Total: -138.30 kcal Atomic # 8 Polarization: -35.20 SS G_CDS: -0.13 Total: -35.33 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 1.90 Total: 47.59 kcal Total: -89.04 3.14 -85.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501597037.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.071 kcal (2) G-P(sol) polarization free energy of solvation -89.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds