Wall clock time and date at job start Tue Mar 31 2020 20:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35317 * 125.87047 * 2 1 4 4 C 1.35349 * 106.17409 * 179.97438 * 3 2 1 5 5 C 1.50707 * 126.74757 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.46981 * 124.99691 * 5 4 3 7 7 C 1.50702 * 109.46990 * 179.97438 * 6 5 4 8 8 O 1.21284 * 119.99884 * 0.02562 * 7 6 5 9 9 N 1.34771 * 120.00127 * 179.97438 * 7 6 5 10 10 C 1.46927 * 120.63147 * 0.03137 * 9 7 6 11 11 C 1.53197 * 108.77528 * 233.58100 * 10 9 7 12 12 C 1.53100 * 109.33134 * 305.36729 * 11 10 9 13 13 C 1.53038 * 109.50776 * 61.33969 * 12 11 10 14 14 C 1.53003 * 109.49832 * 178.68452 * 13 12 11 15 15 O 1.42906 * 109.46869 * 184.93380 * 14 13 12 16 16 N 1.46496 * 109.49784 * 58.61801 * 13 12 11 17 17 C 1.36939 * 120.00077 * 180.02562 * 16 13 12 18 18 H 1.07997 * 119.99728 * 359.72656 * 17 16 13 19 19 C 1.38815 * 119.99845 * 180.02562 * 17 16 13 20 20 N 1.31619 * 119.99884 * 359.72042 * 19 17 16 21 21 Si 1.86798 * 119.99660 * 179.72678 * 19 17 16 22 22 H 1.48490 * 109.47339 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47239 * 119.99875 * 21 19 17 24 24 H 1.48504 * 109.46636 * 239.99434 * 21 19 17 25 25 C 1.46937 * 120.63177 * 180.02562 * 9 7 6 26 26 N 1.33764 * 106.50077 * 0.26002 * 4 3 2 27 27 N 1.28634 * 108.88391 * 359.56504 * 26 4 3 28 28 H 1.09000 * 109.47104 * 90.00287 * 1 2 3 29 29 H 1.08999 * 109.47096 * 210.00311 * 1 2 3 30 30 H 1.09004 * 109.47048 * 330.00455 * 1 2 3 31 31 H 1.07994 * 126.90938 * 0.02562 * 3 2 1 32 32 H 1.08992 * 109.47053 * 4.99531 * 5 4 3 33 33 H 1.09005 * 109.46595 * 244.99738 * 5 4 3 34 34 H 1.09005 * 109.47038 * 60.00147 * 6 5 4 35 35 H 1.08989 * 109.47381 * 299.99799 * 6 5 4 36 36 H 1.08996 * 109.58669 * 353.36771 * 10 9 7 37 37 H 1.08998 * 109.58767 * 113.65440 * 10 9 7 38 38 H 1.09001 * 109.49524 * 65.31535 * 11 10 9 39 39 H 1.08998 * 109.49844 * 185.40972 * 11 10 9 40 40 H 1.09003 * 109.44744 * 301.34803 * 12 11 10 41 41 H 1.09003 * 109.50699 * 181.36666 * 12 11 10 42 42 H 1.08993 * 109.47112 * 304.93694 * 14 13 12 43 43 H 1.08999 * 109.47225 * 64.93952 * 14 13 12 44 44 H 0.96702 * 113.99405 * 180.02562 * 15 14 13 45 45 H 0.97004 * 120.00009 * 0.07155 * 16 13 12 46 46 H 0.97000 * 119.99517 * 180.02562 * 20 19 17 47 47 H 1.08995 * 109.58441 * 6.63193 * 25 9 7 48 48 H 1.09000 * 109.70076 * 246.27294 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2579 1.0965 0.0000 4 6 3.5322 0.6404 0.0006 5 6 4.7881 1.4734 0.0014 6 6 5.6697 1.0657 1.1834 7 6 6.9259 1.8982 1.1838 8 8 7.0987 2.7356 0.3236 9 7 7.8568 1.7130 2.1406 10 6 7.6616 0.7028 3.1895 11 6 7.8260 1.3737 4.5569 12 6 9.1809 2.0844 4.6131 13 6 9.2350 3.1675 3.5333 14 6 10.5763 3.8995 3.6109 15 8 10.5816 4.9841 2.6804 16 7 8.1440 4.1223 3.7434 17 6 7.9909 5.1851 2.8935 18 1 8.6771 5.3217 2.0708 19 6 6.9574 6.0901 3.0929 20 7 6.1213 5.9236 4.0958 21 14 6.7532 7.5439 1.9380 22 1 7.8146 7.5047 0.9003 23 1 5.4206 7.4752 1.2864 24 1 6.8623 8.8081 2.7096 25 6 9.0864 2.5174 2.1546 26 7 3.4576 -0.6952 -0.0049 27 7 2.2192 -1.0431 0.0006 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8901 0.5138 31 1 1.9382 2.1281 0.0004 32 1 4.5250 2.5273 0.0909 33 1 5.3314 1.3123 -0.9298 34 1 5.9329 0.0117 1.0938 35 1 5.1265 1.2266 2.1144 36 1 6.6602 0.2802 3.1079 37 1 8.4025 -0.0886 3.0770 38 1 7.0276 2.1010 4.7037 39 1 7.7790 0.6179 5.3409 40 1 9.9778 1.3606 4.4416 41 1 9.3114 2.5424 5.5936 42 1 10.7217 4.2856 4.6198 43 1 11.3825 3.2077 3.3669 44 1 11.4035 5.4936 2.6750 45 1 7.5304 4.0022 4.4851 46 1 5.3990 6.5559 4.2349 47 1 9.0249 3.2919 1.3902 48 1 9.9465 1.8773 1.9580 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502602992.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:24 Heat of formation + Delta-G solvation = 36.754275 kcal Electronic energy + Delta-G solvation = -30700.391697 eV Core-core repulsion = 26600.513021 eV Total energy + Delta-G solvation = -4099.878677 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.28289 -39.76237 -37.77043 -35.68300 -35.14963 -33.74148 -33.32976 -32.15681 -31.01290 -30.15089 -28.54744 -28.05589 -26.02047 -25.19608 -23.80158 -23.42699 -22.13350 -21.61135 -20.93644 -19.04199 -18.11225 -17.39630 -17.20963 -16.69875 -16.45169 -16.13447 -15.50541 -15.30680 -14.79162 -14.64523 -14.14460 -14.05152 -13.83863 -13.66599 -13.54183 -13.17726 -13.15896 -13.07929 -12.62127 -12.45485 -12.08398 -12.00510 -11.93598 -11.61488 -11.47640 -11.16613 -11.06312 -10.74024 -10.69232 -10.61070 -10.54516 -10.37728 -10.11038 -10.08226 -9.64701 -9.44766 -9.22673 -9.00926 -8.92683 -8.73474 -7.92285 -6.75029 -5.52056 -2.76826 1.51793 2.24594 2.50891 3.34121 3.60006 3.66062 3.66371 3.72231 4.20161 4.45306 4.65312 4.78263 4.80947 4.87088 4.94073 5.02858 5.15332 5.21647 5.29527 5.40401 5.42051 5.50845 5.54162 5.65802 5.70235 5.74841 5.85645 5.91040 5.94280 5.97376 6.08259 6.10123 6.15380 6.25717 6.26416 6.32991 6.40659 6.44568 6.46374 6.68736 6.84770 6.97406 7.23084 8.09831 8.22918 8.42862 8.45956 8.66388 8.91819 9.79812 10.27578 10.63535 11.71892 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011545 B = 0.003663 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.799697 B = 7641.488602 C = 9013.509419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.298 5.298 3 C -0.048 4.048 4 C -0.010 4.010 5 C -0.017 4.017 6 C -0.129 4.129 7 C 0.521 3.479 8 O -0.534 6.534 9 N -0.595 5.595 10 C 0.111 3.889 11 C -0.132 4.132 12 C -0.115 4.115 13 C 0.188 3.812 14 C 0.075 3.925 15 O -0.535 6.535 16 N -0.702 5.702 17 C -0.189 4.189 18 H 0.093 0.907 19 C -0.026 4.026 20 N -0.949 5.949 21 Si 0.901 3.099 22 H -0.280 1.280 23 H -0.298 1.298 24 H -0.300 1.300 25 C 0.111 3.889 26 N -0.265 5.265 27 N -0.093 5.093 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.192 0.808 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.060 0.940 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.037 0.963 43 H 0.023 0.977 44 H 0.351 0.649 45 H 0.381 0.619 46 H 0.247 0.753 47 H 0.102 0.898 48 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.286 -13.543 -2.540 14.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.092 5.092 3 C -0.198 4.198 4 C -0.148 4.148 5 C -0.057 4.057 6 C -0.169 4.169 7 C 0.309 3.691 8 O -0.410 6.410 9 N -0.328 5.328 10 C -0.013 4.013 11 C -0.170 4.170 12 C -0.153 4.153 13 C 0.094 3.906 14 C -0.006 4.006 15 O -0.338 6.338 16 N -0.343 5.343 17 C -0.320 4.320 18 H 0.110 0.890 19 C -0.219 4.219 20 N -0.600 5.600 21 Si 0.735 3.265 22 H -0.206 1.206 23 H -0.226 1.226 24 H -0.228 1.228 25 C -0.014 4.014 26 N -0.133 5.133 27 N -0.072 5.072 28 H 0.108 0.892 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.209 0.791 32 H 0.110 0.890 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.099 0.901 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.055 0.945 43 H 0.041 0.959 44 H 0.195 0.805 45 H 0.216 0.784 46 H 0.056 0.944 47 H 0.121 0.879 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.815 -14.740 -3.280 15.849 hybrid contribution -0.146 2.231 0.065 2.237 sum -4.961 -12.508 -3.215 13.835 Atomic orbital electron populations 1.22234 0.72936 1.05880 1.04816 1.47195 1.09281 1.05048 1.47704 1.23493 0.90940 0.94767 1.10580 1.22122 0.95551 0.91291 1.05820 1.19641 0.89163 0.97769 0.99131 1.21542 0.94633 1.00586 1.00165 1.20308 0.84100 0.83358 0.81332 1.90682 1.78054 1.34540 1.37748 1.47736 1.20588 1.37374 1.27090 1.21634 1.01515 0.90356 0.87769 1.21873 0.98975 1.00082 0.96107 1.21630 0.97095 0.97350 0.99234 1.19957 0.88873 0.89180 0.92587 1.22751 0.97386 0.88467 0.92045 1.86977 1.39736 1.45370 1.61703 1.42421 1.30953 1.26754 1.34127 1.19595 1.07623 0.98960 1.05813 0.88974 1.24631 0.98829 0.99657 0.98782 1.69675 1.19590 1.38587 1.32196 0.86137 0.77205 0.82831 0.80351 1.20554 1.22606 1.22767 1.22070 0.83810 0.94358 1.01128 1.75016 1.09258 1.12248 1.16744 1.78260 0.96575 1.12235 1.20148 0.89242 0.88169 0.88272 0.79096 0.88984 0.89452 0.88951 0.89185 0.90321 0.92158 0.90101 0.91571 0.92054 0.91621 0.94468 0.95884 0.80480 0.78434 0.94364 0.87944 0.93934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.42 11.39 59.85 0.68 1.10 16 2 N -0.30 -3.21 3.74 -68.06 -0.25 -3.47 16 3 C -0.05 -0.55 11.54 -17.05 -0.20 -0.74 16 4 C -0.01 -0.14 6.50 -82.78 -0.54 -0.68 16 5 C -0.02 -0.26 5.08 -27.88 -0.14 -0.40 16 6 C -0.13 -1.99 4.03 -27.88 -0.11 -2.10 16 7 C 0.52 10.11 7.70 -10.99 -0.08 10.03 16 8 O -0.53 -12.50 15.40 5.55 0.09 -12.42 16 9 N -0.60 -10.66 2.89 -172.78 -0.50 -11.16 16 10 C 0.11 1.54 6.34 -3.71 -0.02 1.52 16 11 C -0.13 -1.90 5.91 -26.58 -0.16 -2.05 16 12 C -0.12 -1.73 4.77 -26.66 -0.13 -1.86 16 13 C 0.19 3.56 0.68 -131.72 -0.09 3.47 16 14 C 0.07 1.31 6.09 37.16 0.23 1.54 16 15 O -0.54 -10.47 10.04 -35.23 -0.35 -10.82 16 16 N -0.70 -16.99 4.75 -47.14 -0.22 -17.21 16 17 C -0.19 -5.27 8.07 -15.06 -0.12 -5.40 16 18 H 0.09 2.68 5.25 -52.49 -0.28 2.40 16 19 C -0.03 -0.77 5.50 -17.43 -0.10 -0.87 16 20 N -0.95 -29.08 13.06 55.49 0.72 -28.35 16 21 Si 0.90 24.13 29.55 -169.99 -5.02 19.10 16 22 H -0.28 -7.45 7.11 56.52 0.40 -7.05 16 23 H -0.30 -8.06 7.11 56.52 0.40 -7.66 16 24 H -0.30 -8.01 7.11 56.52 0.40 -7.61 16 25 C 0.11 2.13 4.91 -3.73 -0.02 2.12 16 26 N -0.27 -4.11 12.40 33.29 0.41 -3.70 16 27 N -0.09 -1.30 13.17 60.35 0.79 -0.51 16 28 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.19 1.61 8.06 -52.49 -0.42 1.19 16 32 H 0.09 1.45 8.08 -51.93 -0.42 1.03 16 33 H 0.09 1.33 8.10 -51.93 -0.42 0.91 16 34 H 0.09 1.29 7.94 -51.93 -0.41 0.87 16 35 H 0.09 1.38 7.69 -51.94 -0.40 0.98 16 36 H 0.08 0.99 5.93 -51.93 -0.31 0.68 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 1.43 6.75 -51.93 -0.35 1.08 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.35 5.08 9.12 45.56 0.42 5.49 16 45 H 0.38 9.87 6.43 -40.82 -0.26 9.61 16 46 H 0.25 7.43 8.31 -40.82 -0.34 7.10 16 47 H 0.10 2.42 5.82 -51.93 -0.30 2.12 16 48 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 383.73 15.07 5.78 5.78 Total: -1.00 -38.34 383.73 -5.87 -44.21 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: -6.52 Total: 12.88 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: -0.80 Total: 5.67 kcal Atomic # 7 Polarization: -65.36 SS G_CDS: 0.95 Total: -64.40 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.27 Total: -23.24 kcal Atomic # 14 Polarization: 24.13 SS G_CDS: -5.02 Total: 19.10 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -38.34 -5.87 -44.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502602992.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.964 kcal (2) G-P(sol) polarization free energy of solvation -38.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds