Wall clock time and date at job start Tue Mar 31 2020 20:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35317 * 125.87047 * 2 1 4 4 C 1.35349 * 106.17409 * 179.97438 * 3 2 1 5 5 C 1.50707 * 126.74757 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.46981 * 124.99691 * 5 4 3 7 7 C 1.50702 * 109.46990 * 179.97438 * 6 5 4 8 8 O 1.21284 * 119.99884 * 0.02562 * 7 6 5 9 9 N 1.34771 * 120.00127 * 179.97438 * 7 6 5 10 10 C 1.46927 * 120.63147 * 0.03137 * 9 7 6 11 11 C 1.53197 * 108.77528 * 233.58100 * 10 9 7 12 12 C 1.53100 * 109.33134 * 305.36729 * 11 10 9 13 13 C 1.53038 * 109.50776 * 61.33969 * 12 11 10 14 14 C 1.53003 * 109.49832 * 178.68452 * 13 12 11 15 15 O 1.42906 * 109.46869 * 184.93380 * 14 13 12 16 16 N 1.46496 * 109.49784 * 58.61801 * 13 12 11 17 17 C 1.36939 * 120.00077 * 180.02562 * 16 13 12 18 18 H 1.07997 * 119.99728 * 359.72656 * 17 16 13 19 19 C 1.38815 * 119.99845 * 180.02562 * 17 16 13 20 20 N 1.31619 * 119.99884 * 359.72042 * 19 17 16 21 21 Si 1.86798 * 119.99660 * 179.72678 * 19 17 16 22 22 H 1.48490 * 109.47339 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47239 * 119.99875 * 21 19 17 24 24 H 1.48504 * 109.46636 * 239.99434 * 21 19 17 25 25 C 1.46937 * 120.63177 * 180.02562 * 9 7 6 26 26 N 1.33764 * 106.50077 * 0.26002 * 4 3 2 27 27 N 1.28634 * 108.88391 * 359.56504 * 26 4 3 28 28 H 1.09000 * 109.47104 * 90.00287 * 1 2 3 29 29 H 1.08999 * 109.47096 * 210.00311 * 1 2 3 30 30 H 1.09004 * 109.47048 * 330.00455 * 1 2 3 31 31 H 1.07994 * 126.90938 * 0.02562 * 3 2 1 32 32 H 1.08992 * 109.47053 * 4.99531 * 5 4 3 33 33 H 1.09005 * 109.46595 * 244.99738 * 5 4 3 34 34 H 1.09005 * 109.47038 * 60.00147 * 6 5 4 35 35 H 1.08989 * 109.47381 * 299.99799 * 6 5 4 36 36 H 1.08996 * 109.58669 * 353.36771 * 10 9 7 37 37 H 1.08998 * 109.58767 * 113.65440 * 10 9 7 38 38 H 1.09001 * 109.49524 * 65.31535 * 11 10 9 39 39 H 1.08998 * 109.49844 * 185.40972 * 11 10 9 40 40 H 1.09003 * 109.44744 * 301.34803 * 12 11 10 41 41 H 1.09003 * 109.50699 * 181.36666 * 12 11 10 42 42 H 1.08993 * 109.47112 * 304.93694 * 14 13 12 43 43 H 1.08999 * 109.47225 * 64.93952 * 14 13 12 44 44 H 0.96702 * 113.99405 * 180.02562 * 15 14 13 45 45 H 0.97004 * 120.00009 * 0.07155 * 16 13 12 46 46 H 0.97000 * 119.99517 * 180.02562 * 20 19 17 47 47 H 1.08995 * 109.58441 * 6.63193 * 25 9 7 48 48 H 1.09000 * 109.70076 * 246.27294 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2579 1.0965 0.0000 4 6 3.5322 0.6404 0.0006 5 6 4.7881 1.4734 0.0014 6 6 5.6697 1.0657 1.1834 7 6 6.9259 1.8982 1.1838 8 8 7.0987 2.7356 0.3236 9 7 7.8568 1.7130 2.1406 10 6 7.6616 0.7028 3.1895 11 6 7.8260 1.3737 4.5569 12 6 9.1809 2.0844 4.6131 13 6 9.2350 3.1675 3.5333 14 6 10.5763 3.8995 3.6109 15 8 10.5816 4.9841 2.6804 16 7 8.1440 4.1223 3.7434 17 6 7.9909 5.1851 2.8935 18 1 8.6771 5.3217 2.0708 19 6 6.9574 6.0901 3.0929 20 7 6.1213 5.9236 4.0958 21 14 6.7532 7.5439 1.9380 22 1 7.8146 7.5047 0.9003 23 1 5.4206 7.4752 1.2864 24 1 6.8623 8.8081 2.7096 25 6 9.0864 2.5174 2.1546 26 7 3.4576 -0.6952 -0.0049 27 7 2.2192 -1.0431 0.0006 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8901 0.5138 31 1 1.9382 2.1281 0.0004 32 1 4.5250 2.5273 0.0909 33 1 5.3314 1.3123 -0.9298 34 1 5.9329 0.0117 1.0938 35 1 5.1265 1.2266 2.1144 36 1 6.6602 0.2802 3.1079 37 1 8.4025 -0.0886 3.0770 38 1 7.0276 2.1010 4.7037 39 1 7.7790 0.6179 5.3409 40 1 9.9778 1.3606 4.4416 41 1 9.3114 2.5424 5.5936 42 1 10.7217 4.2856 4.6198 43 1 11.3825 3.2077 3.3669 44 1 11.4035 5.4936 2.6750 45 1 7.5304 4.0022 4.4851 46 1 5.3990 6.5559 4.2349 47 1 9.0249 3.2919 1.3902 48 1 9.9465 1.8773 1.9580 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502602992.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:23 Heat of formation + Delta-G solvation = 5.955216 kcal Electronic energy + Delta-G solvation = -30701.727245 eV Core-core repulsion = 26600.513021 eV Total energy + Delta-G solvation = -4101.214224 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.22784 -41.20854 -39.28437 -37.11198 -36.10854 -35.49348 -34.44992 -33.84203 -32.48938 -31.31465 -30.32947 -28.74201 -27.36385 -26.47807 -25.53235 -25.03980 -23.03062 -22.89952 -21.96307 -20.51030 -19.60017 -19.12060 -18.31199 -17.75749 -17.68969 -17.55496 -17.01228 -16.62872 -16.30082 -15.82315 -15.69395 -15.60084 -15.26097 -14.85351 -14.67960 -14.51234 -14.31815 -14.05149 -13.88390 -13.63111 -13.49777 -13.39342 -13.21298 -13.05921 -12.88580 -12.67414 -12.61247 -12.51540 -12.29826 -11.99693 -11.87021 -11.73419 -11.66710 -11.30985 -11.26021 -10.99010 -10.86165 -10.57050 -10.53481 -10.13319 -9.42433 -8.74667 -7.75951 -4.96406 0.61659 1.43356 1.44478 1.45954 1.56105 1.56262 1.85549 2.30898 2.68510 3.31356 3.43360 3.67080 3.72720 3.78079 3.93533 4.00280 4.06077 4.10228 4.15644 4.21664 4.27659 4.33641 4.36566 4.41376 4.54887 4.62010 4.63474 4.65322 4.73085 4.75769 4.82257 4.86260 4.97804 5.00832 5.07206 5.08044 5.09312 5.22693 5.24828 5.48698 5.55404 5.67708 5.81877 5.98565 6.49331 6.67832 7.19097 7.44371 7.47573 7.57951 8.26288 8.49822 9.48824 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011545 B = 0.003663 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.799697 B = 7641.488602 C = 9013.509419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.287 5.287 3 C -0.038 4.038 4 C -0.032 4.032 5 C -0.009 4.009 6 C -0.113 4.113 7 C 0.507 3.493 8 O -0.587 6.587 9 N -0.597 5.597 10 C 0.105 3.895 11 C -0.128 4.128 12 C -0.109 4.109 13 C 0.174 3.826 14 C 0.074 3.926 15 O -0.570 6.570 16 N -0.709 5.709 17 C -0.159 4.159 18 H 0.080 0.920 19 C -0.090 4.090 20 N -0.979 5.979 21 Si 0.945 3.055 22 H -0.281 1.281 23 H -0.305 1.305 24 H -0.299 1.299 25 C 0.115 3.885 26 N -0.295 5.295 27 N -0.115 5.115 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.125 0.875 31 H 0.221 0.779 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.111 0.889 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.040 0.960 39 H 0.105 0.895 40 H 0.100 0.900 41 H 0.066 0.934 42 H 0.037 0.963 43 H 0.064 0.936 44 H 0.373 0.627 45 H 0.371 0.629 46 H 0.239 0.761 47 H 0.052 0.948 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.058 -15.689 -1.772 16.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.081 5.081 3 C -0.189 4.189 4 C -0.170 4.170 5 C -0.049 4.049 6 C -0.154 4.154 7 C 0.297 3.703 8 O -0.467 6.467 9 N -0.328 5.328 10 C -0.016 4.016 11 C -0.166 4.166 12 C -0.147 4.147 13 C 0.083 3.917 14 C -0.006 4.006 15 O -0.376 6.376 16 N -0.348 5.348 17 C -0.292 4.292 18 H 0.098 0.902 19 C -0.279 4.279 20 N -0.634 5.634 21 Si 0.779 3.221 22 H -0.207 1.207 23 H -0.233 1.233 24 H -0.227 1.227 25 C -0.009 4.009 26 N -0.162 5.162 27 N -0.094 5.094 28 H 0.127 0.873 29 H 0.129 0.871 30 H 0.144 0.856 31 H 0.238 0.762 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.129 0.871 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.115 0.885 38 H 0.059 0.941 39 H 0.123 0.877 40 H 0.118 0.882 41 H 0.085 0.915 42 H 0.055 0.945 43 H 0.082 0.918 44 H 0.220 0.780 45 H 0.204 0.796 46 H 0.048 0.952 47 H 0.070 0.930 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.542 -16.950 -2.496 17.725 hybrid contribution -0.152 2.818 -0.200 2.829 sum -4.694 -14.132 -2.696 15.133 Atomic orbital electron populations 1.22749 0.69679 1.07778 1.06740 1.47614 1.11018 1.04021 1.45463 1.23910 0.90225 0.96124 1.08664 1.22019 0.96090 0.91148 1.07766 1.19433 0.89754 0.97181 0.98505 1.21454 0.92775 1.00735 1.00395 1.21043 0.85214 0.83112 0.80958 1.90651 1.79256 1.36919 1.39916 1.47935 1.19780 1.37600 1.27533 1.21976 1.03619 0.89933 0.86110 1.21845 0.97193 1.00056 0.97514 1.21643 0.98776 0.96741 0.97545 1.20422 0.87841 0.89504 0.93943 1.22733 0.97471 0.88691 0.91724 1.86875 1.41854 1.46524 1.62368 1.42530 1.32307 1.26947 1.33003 1.19668 1.05835 0.98969 1.04708 0.90188 1.25139 0.99926 1.02229 1.00611 1.69778 1.20433 1.39370 1.33839 0.85411 0.76513 0.81134 0.79026 1.20688 1.23345 1.22691 1.21894 0.85561 0.93999 0.99486 1.74942 1.10358 1.12902 1.18004 1.78162 0.96524 1.13427 1.21312 0.87251 0.87117 0.85650 0.76222 0.90411 0.90485 0.87051 0.88966 0.89048 0.88537 0.94096 0.87695 0.88174 0.91548 0.94480 0.91800 0.78002 0.79631 0.95200 0.92971 0.90742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.52 11.39 127.77 1.46 1.97 16 2 N -0.29 -5.66 3.74 -369.24 -1.38 -7.05 16 3 C -0.04 -0.81 11.54 83.49 0.96 0.15 16 4 C -0.03 -0.88 6.50 41.60 0.27 -0.61 16 5 C -0.01 -0.28 5.08 29.85 0.15 -0.12 16 6 C -0.11 -3.51 4.03 29.85 0.12 -3.39 16 7 C 0.51 19.99 7.70 87.66 0.67 20.67 16 8 O -0.59 -28.77 15.40 -3.04 -0.05 -28.82 16 9 N -0.60 -20.78 2.89 -818.96 -2.37 -23.15 16 10 C 0.11 2.61 6.34 86.36 0.55 3.15 16 11 C -0.13 -3.30 5.91 30.69 0.18 -3.11 16 12 C -0.11 -2.92 4.77 30.64 0.15 -2.77 16 13 C 0.17 6.34 0.68 3.67 0.00 6.34 16 14 C 0.07 2.43 6.09 71.98 0.44 2.87 16 15 O -0.57 -21.95 10.04 -148.98 -1.50 -23.45 16 16 N -0.71 -34.57 4.75 -303.06 -1.44 -36.00 16 17 C -0.16 -9.09 8.07 84.03 0.68 -8.41 16 18 H 0.08 4.78 5.25 -2.91 -0.02 4.77 16 19 C -0.09 -5.44 5.50 84.86 0.47 -4.98 16 20 N -0.98 -61.72 13.06 21.65 0.28 -61.44 16 21 Si 0.95 51.15 29.55 68.60 2.03 53.17 16 22 H -0.28 -15.04 7.11 99.48 0.71 -14.33 16 23 H -0.30 -16.64 7.11 99.48 0.71 -15.93 16 24 H -0.30 -15.92 7.11 99.48 0.71 -15.21 16 25 C 0.12 4.32 4.91 86.35 0.42 4.75 16 26 N -0.30 -9.05 12.40 -48.60 -0.60 -9.65 16 27 N -0.11 -3.12 13.17 37.02 0.49 -2.64 16 28 H 0.11 0.44 8.14 -2.39 -0.02 0.43 16 29 H 0.11 0.63 8.14 -2.39 -0.02 0.62 16 30 H 0.13 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.22 3.24 8.06 -2.91 -0.02 3.22 16 32 H 0.08 2.57 8.08 -2.39 -0.02 2.55 16 33 H 0.08 2.47 8.10 -2.38 -0.02 2.46 16 34 H 0.11 2.99 7.94 -2.38 -0.02 2.97 16 35 H 0.09 2.81 7.69 -2.39 -0.02 2.79 16 36 H 0.09 2.05 5.93 -2.39 -0.01 2.03 16 37 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.04 1.40 6.75 -2.39 -0.02 1.39 16 39 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.37 10.42 9.12 -74.06 -0.68 9.74 16 45 H 0.37 19.53 6.43 -92.71 -0.60 18.93 16 46 H 0.24 14.87 8.31 -92.71 -0.77 14.10 16 47 H 0.05 2.51 5.82 -2.39 -0.01 2.50 16 48 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -88.48 383.73 1.71 -86.77 By element: Atomic # 1 Polarization: 36.02 SS G_CDS: -0.27 Total: 35.75 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: 6.52 Total: 16.51 kcal Atomic # 7 Polarization: -134.91 SS G_CDS: -5.02 Total: -139.93 kcal Atomic # 8 Polarization: -50.73 SS G_CDS: -1.54 Total: -52.27 kcal Atomic # 14 Polarization: 51.15 SS G_CDS: 2.03 Total: 53.17 kcal Total: -88.48 1.71 -86.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502602992.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.723 kcal (2) G-P(sol) polarization free energy of solvation -88.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds