Wall clock time and date at job start Tue Mar 31 2020 20:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35310 * 125.86754 * 2 1 4 4 C 1.35350 * 106.17830 * 180.02562 * 3 2 1 5 5 C 1.50703 * 126.75447 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47054 * 124.99848 * 5 4 3 7 7 C 1.50703 * 109.47054 * 179.97438 * 6 5 4 8 8 O 1.21276 * 119.99876 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99847 * 180.02562 * 7 6 5 10 10 C 1.46930 * 120.62937 * 359.97438 * 9 7 6 11 11 C 1.53192 * 108.77237 * 126.41664 * 10 9 7 12 12 C 1.53036 * 109.31601 * 54.63304 * 11 10 9 13 13 C 1.53038 * 109.53862 * 298.63273 * 12 11 10 14 14 C 1.52994 * 109.52759 * 181.33158 * 13 12 11 15 15 O 1.42896 * 109.47398 * 180.08293 * 14 13 12 16 16 N 1.46506 * 109.49973 * 301.41766 * 13 12 11 17 17 C 1.36931 * 119.99939 * 179.83672 * 16 13 12 18 18 H 1.08000 * 120.00644 * 359.97438 * 17 16 13 19 19 C 1.38815 * 119.99715 * 179.97438 * 17 16 13 20 20 N 1.31621 * 119.99673 * 179.72262 * 19 17 16 21 21 Si 1.86795 * 120.00115 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.47274 * 89.99913 * 21 19 17 23 23 H 1.48505 * 109.47015 * 209.99478 * 21 19 17 24 24 H 1.48498 * 109.47362 * 329.99904 * 21 19 17 25 25 C 1.46927 * 120.62874 * 180.02562 * 9 7 6 26 26 N 1.33770 * 106.49824 * 0.26437 * 4 3 2 27 27 N 1.28642 * 108.87838 * 359.56082 * 26 4 3 28 28 H 1.08994 * 109.47068 * 90.00117 * 1 2 3 29 29 H 1.09005 * 109.46812 * 209.99778 * 1 2 3 30 30 H 1.08992 * 109.47185 * 329.99871 * 1 2 3 31 31 H 1.08005 * 126.91352 * 359.97438 * 3 2 1 32 32 H 1.09000 * 109.47146 * 4.99975 * 5 4 3 33 33 H 1.08995 * 109.47558 * 245.00338 * 5 4 3 34 34 H 1.09000 * 109.47041 * 60.00062 * 6 5 4 35 35 H 1.08995 * 109.47338 * 300.00625 * 6 5 4 36 36 H 1.09004 * 109.58290 * 246.20112 * 10 9 7 37 37 H 1.08995 * 109.58727 * 6.62322 * 10 9 7 38 38 H 1.09007 * 109.49339 * 174.58811 * 11 10 9 39 39 H 1.08999 * 109.49431 * 294.64531 * 11 10 9 40 40 H 1.09001 * 109.45927 * 178.61376 * 12 11 10 41 41 H 1.08993 * 109.45804 * 58.65634 * 12 11 10 42 42 H 1.09002 * 109.47344 * 300.08373 * 14 13 12 43 43 H 1.09010 * 109.46949 * 60.08174 * 14 13 12 44 44 H 0.96703 * 114.00121 * 179.97438 * 15 14 13 45 45 H 0.97000 * 119.99307 * 359.83466 * 16 13 12 46 46 H 0.97000 * 120.00043 * 180.02562 * 20 19 17 47 47 H 1.09003 * 109.58387 * 113.79960 * 25 9 7 48 48 H 1.08995 * 109.58797 * 353.37905 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2578 1.0965 0.0000 4 6 3.5321 0.6405 -0.0006 5 6 4.7880 1.4735 -0.0014 6 6 5.6709 1.0661 1.1799 7 6 6.9271 1.8987 1.1788 8 8 7.0990 2.7358 0.3182 9 7 7.8595 1.7130 2.1341 10 6 7.6652 0.7032 3.1835 11 6 8.8870 -0.2205 3.2112 12 6 10.1544 0.6213 3.3759 13 6 10.2951 1.5728 2.1855 14 6 11.5794 2.3909 2.3337 15 8 11.7087 3.2802 1.2227 16 7 10.3497 0.7976 0.9435 17 6 10.4719 1.4398 -0.2596 18 1 10.5276 2.5178 -0.2932 19 6 10.5241 0.7052 -1.4363 20 7 10.6361 1.3228 -2.5932 21 14 10.4271 -1.1593 -1.3784 22 1 9.0070 -1.5842 -1.4683 23 1 11.1876 -1.7302 -2.5191 24 1 11.0095 -1.6460 -0.1020 25 6 9.0890 2.5173 2.1466 26 7 3.4577 -0.6951 -0.0068 27 7 2.2192 -1.0430 -0.0006 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5138 31 1 1.9381 2.1282 -0.0004 32 1 4.5250 2.5275 0.0882 33 1 5.3304 1.3124 -0.9329 34 1 5.9340 0.0121 1.0904 35 1 5.1286 1.2273 2.1115 36 1 7.5579 1.1963 4.1497 37 1 6.7705 0.1193 2.9677 38 1 8.7997 -0.9142 4.0474 39 1 8.9406 -0.7809 2.2778 40 1 11.0232 -0.0354 3.4205 41 1 10.0889 1.1997 4.2973 42 1 11.5383 2.9675 3.2578 43 1 12.4371 1.7186 2.3628 44 1 12.5024 3.8319 1.2508 45 1 10.2993 -0.1707 0.9737 46 1 10.6722 0.8095 -3.4155 47 1 9.0976 3.1580 3.0284 48 1 9.1336 3.1305 1.2466 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502602993.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:30 Heat of formation + Delta-G solvation = 42.860130 kcal Electronic energy + Delta-G solvation = -30736.106788 eV Core-core repulsion = 26636.492881 eV Total energy + Delta-G solvation = -4099.613907 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.31993 -39.83598 -37.84294 -35.69089 -35.19061 -33.82452 -33.37728 -32.16752 -31.08321 -30.24346 -29.10911 -28.11238 -26.06502 -25.26539 -23.84184 -23.12725 -22.17404 -21.66135 -20.97817 -19.11073 -18.06846 -17.64544 -17.38254 -16.74446 -16.49226 -16.26575 -15.56015 -15.36801 -14.90082 -14.63517 -14.21251 -14.03972 -13.95730 -13.76122 -13.62015 -13.28602 -13.21652 -12.88605 -12.63393 -12.41381 -12.33634 -12.05957 -11.97671 -11.69997 -11.54855 -11.19994 -11.16395 -10.91864 -10.78200 -10.64216 -10.60630 -10.45908 -10.14313 -10.04840 -9.84912 -9.38577 -9.26091 -9.03259 -8.86308 -8.75305 -7.97519 -7.00866 -5.43495 -2.78260 1.47249 2.20131 2.49210 3.30066 3.50437 3.55170 3.60789 3.61941 4.13779 4.39636 4.59670 4.71540 4.77127 4.86261 4.87608 4.95614 5.04605 5.13332 5.15898 5.29770 5.33369 5.36706 5.46487 5.56862 5.62191 5.69187 5.78197 5.84018 5.88564 5.91983 6.00246 6.05215 6.10574 6.14260 6.21339 6.26024 6.29584 6.38906 6.42735 6.61978 6.62754 6.97423 7.18141 8.04806 8.37666 8.44500 8.45562 8.77052 8.89418 9.54897 10.22028 10.37000 11.75344 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012786 B = 0.003536 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.309607 B = 7915.875208 C = 8743.433202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.299 5.299 3 C -0.053 4.053 4 C -0.008 4.008 5 C -0.019 4.019 6 C -0.130 4.130 7 C 0.516 3.484 8 O -0.522 6.522 9 N -0.600 5.600 10 C 0.110 3.890 11 C -0.133 4.133 12 C -0.119 4.119 13 C 0.194 3.806 14 C 0.077 3.923 15 O -0.533 6.533 16 N -0.729 5.729 17 C -0.206 4.206 18 H 0.116 0.884 19 C -0.001 4.001 20 N -0.937 5.937 21 Si 0.866 3.134 22 H -0.287 1.287 23 H -0.295 1.295 24 H -0.283 1.283 25 C 0.113 3.887 26 N -0.261 5.261 27 N -0.091 5.091 28 H 0.089 0.911 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.191 0.809 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.062 0.938 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.025 0.975 43 H 0.038 0.962 44 H 0.354 0.646 45 H 0.357 0.643 46 H 0.253 0.747 47 H 0.045 0.955 48 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.650 0.715 15.252 22.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.093 5.093 3 C -0.203 4.203 4 C -0.146 4.146 5 C -0.059 4.059 6 C -0.170 4.170 7 C 0.304 3.696 8 O -0.397 6.397 9 N -0.333 5.333 10 C -0.014 4.014 11 C -0.172 4.172 12 C -0.157 4.157 13 C 0.101 3.899 14 C -0.004 4.004 15 O -0.336 6.336 16 N -0.372 5.372 17 C -0.335 4.335 18 H 0.133 0.867 19 C -0.194 4.194 20 N -0.586 5.586 21 Si 0.697 3.303 22 H -0.214 1.214 23 H -0.222 1.222 24 H -0.210 1.210 25 C -0.011 4.011 26 N -0.128 5.128 27 N -0.070 5.070 28 H 0.108 0.892 29 H 0.118 0.882 30 H 0.116 0.884 31 H 0.208 0.792 32 H 0.106 0.894 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.102 0.898 36 H 0.080 0.920 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.043 0.957 43 H 0.056 0.944 44 H 0.199 0.801 45 H 0.191 0.809 46 H 0.063 0.937 47 H 0.063 0.937 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -17.136 -0.516 14.401 22.389 hybrid contribution 0.299 -0.270 0.146 0.429 sum -16.836 -0.785 14.547 22.264 Atomic orbital electron populations 1.22219 0.73010 1.05716 1.04884 1.47221 1.09250 1.05079 1.47767 1.23405 0.90875 0.94645 1.11397 1.22157 0.95472 0.91398 1.05581 1.19661 0.89173 0.97080 0.99988 1.21560 0.94410 1.01600 0.99446 1.20342 0.84467 0.84002 0.80826 1.90736 1.78211 1.35292 1.35474 1.47798 1.19894 1.37842 1.27784 1.21633 0.98446 0.90287 0.90996 1.21871 0.94749 0.97953 1.02581 1.21663 0.97974 0.98312 0.97718 1.19921 0.92053 0.90818 0.87096 1.22657 0.98526 0.91737 0.87515 1.86952 1.46463 1.54902 1.45284 1.42806 1.88605 1.03740 1.02009 1.19377 1.38488 0.94373 0.81308 0.86682 1.24597 1.03539 0.95741 0.95532 1.69682 1.59040 1.33311 0.96612 0.86834 0.77624 0.89452 0.76343 1.21413 1.22227 1.20969 1.22057 0.83098 0.93390 1.02594 1.75104 1.09075 1.12285 1.16362 1.78313 0.96599 1.12167 1.19938 0.89211 0.88186 0.88405 0.79217 0.89373 0.88712 0.88523 0.89814 0.92012 0.90231 0.91280 0.90926 0.91624 0.91555 0.95740 0.94410 0.80090 0.80909 0.93712 0.93726 0.87289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.36 11.39 59.85 0.68 1.04 16 2 N -0.30 -3.04 3.74 -68.06 -0.25 -3.30 16 3 C -0.05 -0.54 11.54 -17.05 -0.20 -0.74 16 4 C -0.01 -0.11 6.50 -82.78 -0.54 -0.65 16 5 C -0.02 -0.29 5.08 -27.88 -0.14 -0.43 16 6 C -0.13 -1.95 4.03 -27.88 -0.11 -2.07 16 7 C 0.52 9.88 7.70 -10.98 -0.08 9.80 16 8 O -0.52 -12.38 15.39 5.56 0.09 -12.29 16 9 N -0.60 -10.45 2.89 -172.73 -0.50 -10.95 16 10 C 0.11 1.44 6.34 -3.71 -0.02 1.42 16 11 C -0.13 -1.81 5.91 -26.61 -0.16 -1.97 16 12 C -0.12 -1.70 4.76 -26.69 -0.13 -1.82 16 13 C 0.19 3.61 0.68 -131.67 -0.09 3.52 16 14 C 0.08 1.33 6.08 37.15 0.23 1.56 16 15 O -0.53 -10.69 10.11 -35.23 -0.36 -11.04 16 16 N -0.73 -17.22 4.55 -47.10 -0.21 -17.44 16 17 C -0.21 -5.94 8.69 -15.06 -0.13 -6.07 16 18 H 0.12 3.67 5.51 -52.49 -0.29 3.38 16 19 C 0.00 -0.02 5.50 -17.43 -0.10 -0.11 16 20 N -0.94 -31.27 13.97 55.49 0.78 -30.50 16 21 Si 0.87 23.44 27.74 -169.99 -4.71 18.73 16 22 H -0.29 -7.90 7.11 56.52 0.40 -7.50 16 23 H -0.30 -8.17 7.11 56.52 0.40 -7.77 16 24 H -0.28 -7.13 6.52 56.52 0.37 -6.76 16 25 C 0.11 2.14 4.85 -3.68 -0.02 2.12 16 26 N -0.26 -4.26 12.40 33.29 0.41 -3.85 16 27 N -0.09 -1.30 13.16 60.35 0.79 -0.50 16 28 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.10 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.19 1.18 8.06 -52.48 -0.42 0.76 16 32 H 0.09 1.16 8.08 -51.93 -0.42 0.74 16 33 H 0.09 1.69 8.10 -51.93 -0.42 1.27 16 34 H 0.10 1.54 7.69 -51.93 -0.40 1.14 16 35 H 0.08 1.01 7.94 -51.93 -0.41 0.60 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.08 0.94 5.93 -51.93 -0.31 0.63 16 38 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 39 H 0.07 1.20 6.75 -51.93 -0.35 0.85 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.04 0.65 8.14 -51.92 -0.42 0.23 16 44 H 0.35 5.35 9.12 45.56 0.42 5.76 16 45 H 0.36 8.49 4.29 -40.82 -0.18 8.32 16 46 H 0.25 8.14 8.31 -40.82 -0.34 7.80 16 47 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.11 2.61 5.70 -51.93 -0.30 2.32 16 LS Contribution 380.65 15.07 5.74 5.74 Total: -1.00 -41.40 380.65 -5.52 -46.92 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -6.47 Total: 12.90 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: -0.81 Total: 5.60 kcal Atomic # 7 Polarization: -67.56 SS G_CDS: 1.01 Total: -66.54 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.27 Total: -23.33 kcal Atomic # 14 Polarization: 23.44 SS G_CDS: -4.71 Total: 18.73 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -41.40 -5.52 -46.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502602993.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.778 kcal (2) G-P(sol) polarization free energy of solvation -41.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds