Wall clock time and date at job start Tue Mar 31 2020 20:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35310 * 125.86754 * 2 1 4 4 C 1.35350 * 106.17830 * 180.02562 * 3 2 1 5 5 C 1.50703 * 126.75447 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47054 * 124.99848 * 5 4 3 7 7 C 1.50703 * 109.47054 * 179.97438 * 6 5 4 8 8 O 1.21276 * 119.99876 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99847 * 180.02562 * 7 6 5 10 10 C 1.46930 * 120.62937 * 359.97438 * 9 7 6 11 11 C 1.53192 * 108.77237 * 126.41664 * 10 9 7 12 12 C 1.53036 * 109.31601 * 54.63304 * 11 10 9 13 13 C 1.53038 * 109.53862 * 298.63273 * 12 11 10 14 14 C 1.52994 * 109.52759 * 181.33158 * 13 12 11 15 15 O 1.42896 * 109.47398 * 180.08293 * 14 13 12 16 16 N 1.46506 * 109.49973 * 301.41766 * 13 12 11 17 17 C 1.36931 * 119.99939 * 179.83672 * 16 13 12 18 18 H 1.08000 * 120.00644 * 359.97438 * 17 16 13 19 19 C 1.38815 * 119.99715 * 179.97438 * 17 16 13 20 20 N 1.31621 * 119.99673 * 179.72262 * 19 17 16 21 21 Si 1.86795 * 120.00115 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.47274 * 89.99913 * 21 19 17 23 23 H 1.48505 * 109.47015 * 209.99478 * 21 19 17 24 24 H 1.48498 * 109.47362 * 329.99904 * 21 19 17 25 25 C 1.46927 * 120.62874 * 180.02562 * 9 7 6 26 26 N 1.33770 * 106.49824 * 0.26437 * 4 3 2 27 27 N 1.28642 * 108.87838 * 359.56082 * 26 4 3 28 28 H 1.08994 * 109.47068 * 90.00117 * 1 2 3 29 29 H 1.09005 * 109.46812 * 209.99778 * 1 2 3 30 30 H 1.08992 * 109.47185 * 329.99871 * 1 2 3 31 31 H 1.08005 * 126.91352 * 359.97438 * 3 2 1 32 32 H 1.09000 * 109.47146 * 4.99975 * 5 4 3 33 33 H 1.08995 * 109.47558 * 245.00338 * 5 4 3 34 34 H 1.09000 * 109.47041 * 60.00062 * 6 5 4 35 35 H 1.08995 * 109.47338 * 300.00625 * 6 5 4 36 36 H 1.09004 * 109.58290 * 246.20112 * 10 9 7 37 37 H 1.08995 * 109.58727 * 6.62322 * 10 9 7 38 38 H 1.09007 * 109.49339 * 174.58811 * 11 10 9 39 39 H 1.08999 * 109.49431 * 294.64531 * 11 10 9 40 40 H 1.09001 * 109.45927 * 178.61376 * 12 11 10 41 41 H 1.08993 * 109.45804 * 58.65634 * 12 11 10 42 42 H 1.09002 * 109.47344 * 300.08373 * 14 13 12 43 43 H 1.09010 * 109.46949 * 60.08174 * 14 13 12 44 44 H 0.96703 * 114.00121 * 179.97438 * 15 14 13 45 45 H 0.97000 * 119.99307 * 359.83466 * 16 13 12 46 46 H 0.97000 * 120.00043 * 180.02562 * 20 19 17 47 47 H 1.09003 * 109.58387 * 113.79960 * 25 9 7 48 48 H 1.08995 * 109.58797 * 353.37905 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2578 1.0965 0.0000 4 6 3.5321 0.6405 -0.0006 5 6 4.7880 1.4735 -0.0014 6 6 5.6709 1.0661 1.1799 7 6 6.9271 1.8987 1.1788 8 8 7.0990 2.7358 0.3182 9 7 7.8595 1.7130 2.1341 10 6 7.6652 0.7032 3.1835 11 6 8.8870 -0.2205 3.2112 12 6 10.1544 0.6213 3.3759 13 6 10.2951 1.5728 2.1855 14 6 11.5794 2.3909 2.3337 15 8 11.7087 3.2802 1.2227 16 7 10.3497 0.7976 0.9435 17 6 10.4719 1.4398 -0.2596 18 1 10.5276 2.5178 -0.2932 19 6 10.5241 0.7052 -1.4363 20 7 10.6361 1.3228 -2.5932 21 14 10.4271 -1.1593 -1.3784 22 1 9.0070 -1.5842 -1.4683 23 1 11.1876 -1.7302 -2.5191 24 1 11.0095 -1.6460 -0.1020 25 6 9.0890 2.5173 2.1466 26 7 3.4577 -0.6951 -0.0068 27 7 2.2192 -1.0430 -0.0006 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5138 31 1 1.9381 2.1282 -0.0004 32 1 4.5250 2.5275 0.0882 33 1 5.3304 1.3124 -0.9329 34 1 5.9340 0.0121 1.0904 35 1 5.1286 1.2273 2.1115 36 1 7.5579 1.1963 4.1497 37 1 6.7705 0.1193 2.9677 38 1 8.7997 -0.9142 4.0474 39 1 8.9406 -0.7809 2.2778 40 1 11.0232 -0.0354 3.4205 41 1 10.0889 1.1997 4.2973 42 1 11.5383 2.9675 3.2578 43 1 12.4371 1.7186 2.3628 44 1 12.5024 3.8319 1.2508 45 1 10.2993 -0.1707 0.9737 46 1 10.6722 0.8095 -3.4155 47 1 9.0976 3.1580 3.0284 48 1 9.1336 3.1305 1.2466 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502602993.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:29 Heat of formation + Delta-G solvation = 7.450382 kcal Electronic energy + Delta-G solvation = -30737.642270 eV Core-core repulsion = 26636.492881 eV Total energy + Delta-G solvation = -4101.149389 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.22545 -41.25456 -39.35223 -37.12451 -36.11020 -35.59574 -34.46340 -33.90861 -32.62605 -31.46911 -30.77800 -28.73224 -27.38676 -26.49597 -25.25893 -25.06448 -23.01300 -22.90018 -21.98144 -20.61860 -19.66637 -19.46983 -18.32842 -17.85175 -17.68120 -17.55527 -17.03715 -16.66983 -16.30322 -16.02793 -15.73234 -15.57003 -15.11571 -14.90713 -14.65228 -14.58308 -14.37244 -14.06741 -13.96845 -13.72977 -13.60755 -13.40404 -13.32857 -13.09347 -13.00157 -12.73567 -12.59065 -12.52042 -12.29631 -12.05049 -11.88509 -11.73621 -11.63890 -11.39108 -11.31322 -10.99881 -10.92493 -10.59537 -10.54363 -10.13518 -9.52316 -9.01651 -7.80947 -5.11033 0.63975 1.28643 1.36249 1.41085 1.45441 1.58902 1.83870 2.29063 2.57240 3.31862 3.38403 3.56335 3.66984 3.72289 3.79075 3.97627 4.04599 4.08779 4.15290 4.16981 4.24745 4.34675 4.35274 4.40170 4.53532 4.59822 4.63704 4.64874 4.70758 4.75669 4.78828 4.83072 4.91379 5.00783 5.04363 5.05613 5.13026 5.21142 5.22639 5.45179 5.46266 5.70501 5.80672 6.15451 6.47229 6.66195 7.14305 7.34023 7.45074 7.49899 8.02218 8.17426 9.42279 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012786 B = 0.003536 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.309607 B = 7915.875208 C = 8743.433202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.287 5.287 3 C -0.026 4.026 4 C -0.036 4.036 5 C -0.012 4.012 6 C -0.114 4.114 7 C 0.503 3.497 8 O -0.584 6.584 9 N -0.601 5.601 10 C 0.103 3.897 11 C -0.134 4.134 12 C -0.112 4.112 13 C 0.178 3.822 14 C 0.074 3.926 15 O -0.573 6.573 16 N -0.732 5.732 17 C -0.160 4.160 18 H 0.079 0.921 19 C -0.084 4.084 20 N -0.996 5.996 21 Si 0.932 3.068 22 H -0.298 1.298 23 H -0.305 1.305 24 H -0.248 1.248 25 C 0.118 3.882 26 N -0.309 5.309 27 N -0.121 5.121 28 H 0.105 0.895 29 H 0.107 0.893 30 H 0.134 0.866 31 H 0.236 0.764 32 H 0.102 0.898 33 H 0.048 0.952 34 H 0.087 0.913 35 H 0.123 0.877 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.112 0.888 39 H 0.037 0.963 40 H 0.072 0.928 41 H 0.107 0.893 42 H 0.069 0.931 43 H 0.039 0.961 44 H 0.373 0.627 45 H 0.358 0.642 46 H 0.244 0.756 47 H 0.080 0.920 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.675 -0.030 19.962 27.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.081 5.081 3 C -0.178 4.178 4 C -0.175 4.175 5 C -0.051 4.051 6 C -0.154 4.154 7 C 0.292 3.708 8 O -0.464 6.464 9 N -0.332 5.332 10 C -0.018 4.018 11 C -0.172 4.172 12 C -0.149 4.149 13 C 0.088 3.912 14 C -0.006 4.006 15 O -0.379 6.379 16 N -0.375 5.375 17 C -0.291 4.291 18 H 0.097 0.903 19 C -0.273 4.273 20 N -0.651 5.651 21 Si 0.763 3.237 22 H -0.226 1.226 23 H -0.233 1.233 24 H -0.173 1.173 25 C -0.007 4.007 26 N -0.175 5.175 27 N -0.100 5.100 28 H 0.123 0.877 29 H 0.126 0.874 30 H 0.152 0.848 31 H 0.252 0.748 32 H 0.121 0.879 33 H 0.067 0.933 34 H 0.105 0.895 35 H 0.141 0.859 36 H 0.121 0.879 37 H 0.111 0.889 38 H 0.130 0.870 39 H 0.055 0.945 40 H 0.091 0.909 41 H 0.125 0.875 42 H 0.087 0.913 43 H 0.057 0.943 44 H 0.221 0.779 45 H 0.192 0.808 46 H 0.053 0.947 47 H 0.097 0.903 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -19.164 -1.316 19.249 27.194 hybrid contribution 0.836 0.140 -1.185 1.457 sum -18.328 -1.176 18.064 25.761 Atomic orbital electron populations 1.22762 0.69550 1.07994 1.06608 1.47688 1.11083 1.04130 1.45235 1.23966 0.89438 0.96318 1.08040 1.22068 0.96395 0.90919 1.08132 1.19466 0.89580 0.98291 0.97794 1.21487 0.92800 0.99785 1.01362 1.21138 0.85856 0.83604 0.80220 1.90710 1.79666 1.38112 1.37936 1.47997 1.18721 1.38227 1.28288 1.22033 0.99054 0.89627 0.91126 1.21916 0.94427 0.98279 1.02549 1.21688 0.98689 0.97848 0.96704 1.20458 0.92354 0.91671 0.86752 1.22724 0.97563 0.91923 0.88424 1.86894 1.47939 1.55876 1.47186 1.42832 1.88362 1.04029 1.02244 1.19227 1.33697 0.92958 0.83259 0.90346 1.25312 1.05992 1.00538 0.95408 1.69891 1.62999 1.34934 0.97276 0.85712 0.76763 0.83888 0.77346 1.22627 1.23254 1.17285 1.21838 0.84111 0.93545 1.01174 1.75024 1.10572 1.13803 1.18096 1.78207 0.96440 1.13736 1.21665 0.87695 0.87414 0.84760 0.74773 0.87914 0.93322 0.89511 0.85918 0.87946 0.88871 0.86988 0.94463 0.90903 0.87467 0.91260 0.94277 0.77934 0.80829 0.94686 0.90251 0.93354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.36 11.39 127.77 1.46 1.81 16 2 N -0.29 -5.18 3.74 -369.25 -1.38 -6.56 16 3 C -0.03 -0.47 11.54 83.49 0.96 0.50 16 4 C -0.04 -0.99 6.50 41.60 0.27 -0.72 16 5 C -0.01 -0.36 5.08 29.85 0.15 -0.21 16 6 C -0.11 -3.43 4.03 29.85 0.12 -3.31 16 7 C 0.50 19.67 7.70 87.66 0.67 20.34 16 8 O -0.58 -29.62 15.39 -3.02 -0.05 -29.66 16 9 N -0.60 -20.18 2.89 -818.80 -2.37 -22.54 16 10 C 0.10 2.28 6.34 86.36 0.55 2.83 16 11 C -0.13 -3.04 5.91 30.67 0.18 -2.86 16 12 C -0.11 -2.66 4.76 30.62 0.15 -2.51 16 13 C 0.18 6.30 0.68 3.70 0.00 6.30 16 14 C 0.07 2.40 6.08 71.98 0.44 2.84 16 15 O -0.57 -23.34 10.11 -148.98 -1.51 -24.85 16 16 N -0.73 -34.57 4.55 -302.92 -1.38 -35.95 16 17 C -0.16 -9.61 8.69 84.04 0.73 -8.88 16 18 H 0.08 5.33 5.51 -2.91 -0.02 5.32 16 19 C -0.08 -5.47 5.50 84.86 0.47 -5.00 16 20 N -1.00 -70.83 13.97 21.65 0.30 -70.52 16 21 Si 0.93 50.63 27.74 68.60 1.90 52.54 16 22 H -0.30 -16.57 7.11 99.48 0.71 -15.86 16 23 H -0.30 -16.91 7.11 99.48 0.71 -16.20 16 24 H -0.25 -11.84 6.52 99.48 0.65 -11.19 16 25 C 0.12 4.38 4.85 86.38 0.42 4.80 16 26 N -0.31 -10.19 12.40 -48.60 -0.60 -10.80 16 27 N -0.12 -3.40 13.16 37.02 0.49 -2.91 16 28 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 29 H 0.11 0.44 8.14 -2.38 -0.02 0.42 16 30 H 0.13 -0.25 8.14 -2.39 -0.02 -0.26 16 31 H 0.24 1.86 8.06 -2.91 -0.02 1.83 16 32 H 0.10 2.75 8.08 -2.39 -0.02 2.73 16 33 H 0.05 1.91 8.10 -2.39 -0.02 1.89 16 34 H 0.09 2.79 7.69 -2.39 -0.02 2.78 16 35 H 0.12 2.67 7.94 -2.39 -0.02 2.65 16 36 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.09 1.84 5.93 -2.39 -0.01 1.83 16 38 H 0.11 1.68 8.14 -2.38 -0.02 1.66 16 39 H 0.04 1.12 6.75 -2.39 -0.02 1.11 16 40 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 44 H 0.37 11.42 9.12 -74.06 -0.68 10.75 16 45 H 0.36 16.70 4.29 -92.71 -0.40 16.30 16 46 H 0.24 16.82 8.31 -92.71 -0.77 16.05 16 47 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 48 H 0.05 2.42 5.70 -2.39 -0.01 2.41 16 Total: -1.00 -102.52 380.65 1.84 -100.68 By element: Atomic # 1 Polarization: 34.79 SS G_CDS: -0.14 Total: 34.65 kcal Atomic # 6 Polarization: 9.36 SS G_CDS: 6.57 Total: 15.92 kcal Atomic # 7 Polarization: -144.34 SS G_CDS: -4.94 Total: -149.28 kcal Atomic # 8 Polarization: -52.96 SS G_CDS: -1.55 Total: -54.51 kcal Atomic # 14 Polarization: 50.63 SS G_CDS: 1.90 Total: 52.54 kcal Total: -102.52 1.84 -100.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502602993.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.130 kcal (2) G-P(sol) polarization free energy of solvation -102.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds