Wall clock time and date at job start Tue Mar 31 2020 21:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42904 * 114.00198 * 2 1 4 4 C 1.52999 * 109.47433 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47168 * 179.97438 * 4 3 2 6 6 C 1.34806 * 126.59271 * 124.99895 * 5 4 3 7 7 C 1.36592 * 106.84088 * 180.02562 * 6 5 4 8 8 C 1.47523 * 125.77620 * 179.97438 * 7 6 5 9 9 O 1.21598 * 119.99721 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00450 * 179.97438 * 8 7 6 11 11 C 1.47425 * 125.64659 * 5.16029 * 10 8 7 12 12 C 1.55116 * 104.94356 * 156.03194 * 11 10 8 13 13 C 1.55166 * 101.48554 * 36.77623 * 12 11 10 14 14 C 1.47021 * 125.64914 * 185.20347 * 10 8 7 15 15 H 1.09008 * 109.87948 * 300.43325 * 14 10 8 16 16 C 1.52992 * 110.01555 * 61.53024 * 14 10 8 17 17 N 1.46501 * 109.47417 * 182.17220 * 16 14 10 18 18 C 1.46508 * 119.99834 * 265.36090 * 17 16 14 19 19 C 1.36931 * 120.00007 * 85.35939 * 17 16 14 20 20 H 1.08002 * 120.00313 * 19.34395 * 19 17 16 21 21 C 1.38819 * 120.00093 * 199.34277 * 19 17 16 22 22 N 1.31620 * 119.99787 * 16.05835 * 21 19 17 23 23 Si 1.86799 * 120.00143 * 196.05401 * 21 19 17 24 24 H 1.48503 * 109.46853 * 94.98513 * 23 21 19 25 25 H 1.48499 * 109.46969 * 214.98363 * 23 21 19 26 26 H 1.48501 * 109.46941 * 334.98728 * 23 21 19 27 27 N 1.34396 * 108.45932 * 0.24192 * 7 6 5 28 28 N 1.28765 * 109.52080 * 359.58820 * 27 7 6 29 29 H 1.09000 * 109.46988 * 60.00434 * 1 2 3 30 30 H 1.09000 * 109.46994 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47527 * 299.99670 * 1 2 3 32 32 H 1.08998 * 109.46876 * 59.99825 * 3 2 1 33 33 H 1.09001 * 109.46726 * 300.00032 * 3 2 1 34 34 H 1.09007 * 109.47116 * 59.99853 * 4 3 2 35 35 H 1.09001 * 109.46813 * 300.00424 * 4 3 2 36 36 H 1.08007 * 126.58539 * 359.97438 * 6 5 4 37 37 H 1.09004 * 110.36382 * 274.74730 * 11 10 8 38 38 H 1.08995 * 110.36660 * 36.95585 * 11 10 8 39 39 H 1.09001 * 110.93955 * 278.78879 * 12 11 10 40 40 H 1.09000 * 111.16715 * 154.86530 * 12 11 10 41 41 H 1.09000 * 110.71692 * 206.26545 * 13 12 11 42 42 H 1.09002 * 110.71723 * 83.17081 * 13 12 11 43 43 H 1.08998 * 109.47578 * 302.17676 * 16 14 10 44 44 H 1.09001 * 109.46802 * 62.17175 * 16 14 10 45 45 H 1.08996 * 109.46830 * 93.02410 * 18 17 16 46 46 H 1.08995 * 109.46788 * 213.01723 * 18 17 16 47 47 H 1.08994 * 109.46813 * 333.02105 * 18 17 16 48 48 H 0.96993 * 119.99775 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1313 2.5230 0.0000 6 6 5.0249 3.0052 0.8867 7 6 5.3056 4.2873 0.5082 8 6 6.2370 5.2042 1.1924 9 8 6.8335 4.8353 2.1857 10 7 6.4275 6.4505 0.7160 11 6 5.6959 7.0616 -0.4086 12 6 5.8044 8.5909 -0.1725 13 6 7.2424 8.7143 0.3972 14 6 7.4001 7.4254 1.2311 15 1 7.1939 7.6354 2.2807 16 6 8.8207 6.8780 1.0794 17 7 9.7757 7.8354 1.6430 18 6 10.4283 8.8173 0.7732 19 6 10.0583 7.8126 2.9826 20 1 9.8417 6.9294 3.5653 21 6 10.6233 8.9246 3.5919 22 7 10.5995 10.0915 2.9834 23 14 11.4173 8.7649 5.2752 24 1 12.8781 8.5509 5.1151 25 1 11.1814 10.0074 6.0535 26 1 10.8236 7.6096 5.9949 27 7 4.5854 4.5743 -0.5896 28 7 3.8813 3.5489 -0.9225 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 3.8575 0.6436 -0.8892 35 1 3.8567 0.6439 0.8908 36 1 5.4389 2.4792 1.7343 37 1 6.1632 6.7928 -1.3560 38 1 4.6525 6.7466 -0.3982 39 1 5.0657 8.9260 0.5555 40 1 5.7063 9.1415 -1.1081 41 1 7.3318 9.5968 1.0306 42 1 7.9754 8.7441 -0.4090 43 1 8.9028 5.9287 1.6086 44 1 9.0402 6.7251 0.0227 45 1 9.8518 9.7423 0.7730 46 1 11.4347 9.0165 1.1414 47 1 10.4839 8.4235 -0.2415 48 1 10.9940 10.8686 3.4093 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505430650.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:54 Heat of formation + Delta-G solvation = 58.141070 kcal Electronic energy + Delta-G solvation = -29465.457951 eV Core-core repulsion = 25366.506676 eV Total energy + Delta-G solvation = -4098.951275 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.38367 -39.57760 -38.61206 -37.13008 -35.34024 -35.09190 -31.73184 -31.26234 -31.16923 -30.03409 -28.77708 -26.99102 -25.97196 -25.05743 -24.46664 -24.10874 -22.17445 -21.86560 -20.98288 -20.38657 -18.99863 -17.76175 -16.99736 -16.84376 -16.54942 -16.29242 -16.14642 -15.77973 -15.34080 -15.06966 -14.65678 -14.50633 -14.14648 -13.84763 -13.52102 -13.30881 -13.07174 -12.89511 -12.83085 -12.60589 -12.43473 -12.14374 -11.95440 -11.79549 -11.68980 -11.40186 -11.27847 -10.80356 -10.68206 -10.62225 -10.49655 -10.44648 -10.35794 -10.22928 -10.02015 -9.86504 -9.67592 -9.62949 -9.41339 -8.47615 -8.18612 -6.68721 -5.65041 -3.04869 0.92937 1.60972 1.70268 3.13441 3.24002 3.46066 3.49076 3.52592 3.55606 3.97156 4.12891 4.21702 4.51422 4.57330 4.61618 4.71866 4.76457 4.80739 4.87373 4.99395 5.00495 5.11618 5.17849 5.30087 5.35284 5.49713 5.57162 5.73276 5.82821 5.95863 6.05531 6.07196 6.09974 6.27244 6.40332 6.44342 6.52476 6.63861 6.77438 6.81231 6.95879 7.14252 7.45662 7.73630 7.77071 7.91781 7.94776 8.43966 8.50313 9.33566 9.96813 10.44340 11.41191 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.020264 B = 0.002335 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.435353 B =11987.842173 C =12881.291302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.389 6.389 3 C 0.050 3.950 4 C 0.126 3.874 5 N -0.364 5.364 6 C 0.095 3.905 7 C -0.086 4.086 8 C 0.608 3.392 9 O -0.532 6.532 10 N -0.596 5.596 11 C 0.106 3.894 12 C -0.138 4.138 13 C -0.110 4.110 14 C 0.117 3.883 15 H 0.079 0.921 16 C 0.147 3.853 17 N -0.595 5.595 18 C 0.163 3.837 19 C -0.245 4.245 20 H 0.071 0.929 21 C -0.002 4.002 22 N -0.909 5.909 23 Si 0.902 3.098 24 H -0.290 1.290 25 H -0.293 1.293 26 H -0.279 1.279 27 N -0.199 5.199 28 N -0.072 5.072 29 H 0.046 0.954 30 H 0.091 0.909 31 H 0.045 0.955 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.108 0.892 35 H 0.115 0.885 36 H 0.207 0.793 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.054 0.946 44 H 0.038 0.962 45 H 0.028 0.972 46 H 0.047 0.953 47 H -0.005 1.005 48 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.484 -16.145 -9.418 27.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.307 6.307 3 C -0.028 4.028 4 C 0.005 3.995 5 N -0.151 5.151 6 C -0.061 4.061 7 C -0.226 4.226 8 C 0.394 3.606 9 O -0.408 6.408 10 N -0.329 5.329 11 C -0.017 4.017 12 C -0.176 4.176 13 C -0.148 4.148 14 C 0.012 3.988 15 H 0.097 0.903 16 C 0.019 3.981 17 N -0.318 5.318 18 C 0.019 3.981 19 C -0.375 4.375 20 H 0.089 0.911 21 C -0.199 4.199 22 N -0.555 5.555 23 Si 0.733 3.267 24 H -0.217 1.217 25 H -0.220 1.220 26 H -0.204 1.204 27 N -0.072 5.072 28 N -0.052 5.052 29 H 0.064 0.936 30 H 0.110 0.890 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.126 0.874 35 H 0.133 0.867 36 H 0.223 0.777 37 H 0.084 0.916 38 H 0.101 0.899 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.102 0.898 42 H 0.090 0.910 43 H 0.072 0.928 44 H 0.056 0.944 45 H 0.046 0.954 46 H 0.065 0.935 47 H 0.013 0.987 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -19.766 -16.060 -10.045 27.377 hybrid contribution 0.567 -0.118 1.764 1.856 sum -19.199 -16.177 -8.281 26.437 Atomic orbital electron populations 1.22806 0.79653 1.03286 1.00539 1.87780 1.20800 1.26504 1.95632 1.22627 0.91967 0.85748 1.02425 1.21662 0.93101 0.78171 1.06592 1.50241 1.30841 1.13507 1.20503 1.23402 0.92018 0.94984 0.95683 1.21622 1.06690 0.95467 0.98786 1.16316 0.80922 0.80267 0.83141 1.90852 1.49425 1.75541 1.24988 1.48498 1.38153 1.12628 1.33587 1.22421 0.97285 0.92633 0.89388 1.22886 0.98390 0.94932 1.01414 1.22551 0.94932 0.97757 0.99567 1.22735 0.90257 0.87286 0.98514 0.90256 1.21127 0.86785 0.93889 0.96336 1.43965 1.44887 1.37477 1.05432 1.20840 0.97681 0.91240 0.88371 1.19303 1.35885 0.97573 0.84749 0.91086 1.24913 1.02213 0.94890 0.97922 1.70092 1.48343 0.98476 1.38612 0.86252 0.79507 0.76913 0.84069 1.21692 1.21959 1.20430 1.74734 1.03870 1.18358 1.10284 1.81966 1.20853 0.90526 1.11857 0.93555 0.89014 0.93667 0.92288 0.91241 0.87403 0.86716 0.77659 0.91613 0.89893 0.91208 0.90346 0.89783 0.90985 0.92813 0.94405 0.95407 0.93473 0.98674 0.93944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.39 -2.59 10.70 -35.23 -0.38 -2.96 16 3 C 0.05 0.31 6.14 37.16 0.23 0.53 16 4 C 0.13 0.72 6.91 -4.04 -0.03 0.70 16 5 N -0.36 -3.41 3.69 -61.06 -0.23 -3.63 16 6 C 0.10 1.01 11.27 -16.84 -0.19 0.82 16 7 C -0.09 -1.23 6.83 -83.55 -0.57 -1.80 16 8 C 0.61 10.72 7.59 -12.48 -0.09 10.62 16 9 O -0.53 -10.97 16.06 5.28 0.08 -10.89 16 10 N -0.60 -10.38 3.07 -164.11 -0.50 -10.89 16 11 C 0.11 1.51 5.96 -2.42 -0.01 1.50 16 12 C -0.14 -1.90 7.11 -24.47 -0.17 -2.07 16 13 C -0.11 -1.93 5.54 -24.89 -0.14 -2.07 16 14 C 0.12 2.33 3.08 -66.96 -0.21 2.13 16 15 H 0.08 1.85 8.14 -51.92 -0.42 1.43 16 16 C 0.15 3.28 5.13 -4.05 -0.02 3.26 16 17 N -0.60 -15.31 2.77 -181.12 -0.50 -15.81 16 18 C 0.16 4.03 7.89 59.85 0.47 4.50 16 19 C -0.25 -6.97 9.68 -15.06 -0.15 -7.11 16 20 H 0.07 2.05 7.88 -52.49 -0.41 1.64 16 21 C 0.00 -0.05 5.03 -17.43 -0.09 -0.14 16 22 N -0.91 -26.55 10.69 55.49 0.59 -25.96 16 23 Si 0.90 22.57 29.58 -169.99 -5.03 17.54 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 26 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 27 N -0.20 -2.75 9.53 32.84 0.31 -2.44 16 28 N -0.07 -0.88 13.65 60.35 0.82 -0.05 16 29 H 0.05 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.11 0.53 8.14 -51.92 -0.42 0.11 16 35 H 0.11 0.41 8.08 -51.93 -0.42 -0.01 16 36 H 0.21 1.60 8.06 -52.48 -0.42 1.18 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.08 1.13 6.46 -51.93 -0.34 0.80 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 42 H 0.07 1.27 7.21 -51.93 -0.37 0.90 16 43 H 0.05 1.29 6.90 -51.93 -0.36 0.93 16 44 H 0.04 0.79 7.76 -51.93 -0.40 0.38 16 45 H 0.03 0.71 7.33 -51.93 -0.38 0.33 16 46 H 0.05 1.26 7.03 -51.93 -0.36 0.90 16 47 H -0.01 -0.11 7.82 -51.93 -0.41 -0.52 16 48 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 392.62 15.07 5.92 5.92 Total: -1.00 -34.04 392.62 -6.43 -40.46 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -7.66 Total: -3.42 kcal Atomic # 6 Polarization: 11.98 SS G_CDS: 0.14 Total: 12.12 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: 0.50 Total: -58.78 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -0.29 Total: -13.85 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.03 Total: 17.54 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.04 -6.43 -40.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505430650.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.604 kcal (2) G-P(sol) polarization free energy of solvation -34.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds