Wall clock time and date at job start Tue Mar 31 2020 21:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42904 * 114.00198 * 2 1 4 4 C 1.52999 * 109.47433 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47168 * 179.97438 * 4 3 2 6 6 C 1.34806 * 126.59271 * 124.99895 * 5 4 3 7 7 C 1.36592 * 106.84088 * 180.02562 * 6 5 4 8 8 C 1.47523 * 125.77620 * 179.97438 * 7 6 5 9 9 O 1.21598 * 119.99721 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00450 * 179.97438 * 8 7 6 11 11 C 1.47425 * 125.64659 * 5.16029 * 10 8 7 12 12 C 1.55116 * 104.94356 * 156.03194 * 11 10 8 13 13 C 1.55166 * 101.48554 * 36.77623 * 12 11 10 14 14 C 1.47021 * 125.64914 * 185.20347 * 10 8 7 15 15 H 1.09008 * 109.87948 * 300.43325 * 14 10 8 16 16 C 1.52992 * 110.01555 * 61.53024 * 14 10 8 17 17 N 1.46501 * 109.47417 * 182.17220 * 16 14 10 18 18 C 1.46508 * 119.99834 * 265.36090 * 17 16 14 19 19 C 1.36931 * 120.00007 * 85.35939 * 17 16 14 20 20 H 1.08002 * 120.00313 * 19.34395 * 19 17 16 21 21 C 1.38819 * 120.00093 * 199.34277 * 19 17 16 22 22 N 1.31620 * 119.99787 * 16.05835 * 21 19 17 23 23 Si 1.86799 * 120.00143 * 196.05401 * 21 19 17 24 24 H 1.48503 * 109.46853 * 94.98513 * 23 21 19 25 25 H 1.48499 * 109.46969 * 214.98363 * 23 21 19 26 26 H 1.48501 * 109.46941 * 334.98728 * 23 21 19 27 27 N 1.34396 * 108.45932 * 0.24192 * 7 6 5 28 28 N 1.28765 * 109.52080 * 359.58820 * 27 7 6 29 29 H 1.09000 * 109.46988 * 60.00434 * 1 2 3 30 30 H 1.09000 * 109.46994 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47527 * 299.99670 * 1 2 3 32 32 H 1.08998 * 109.46876 * 59.99825 * 3 2 1 33 33 H 1.09001 * 109.46726 * 300.00032 * 3 2 1 34 34 H 1.09007 * 109.47116 * 59.99853 * 4 3 2 35 35 H 1.09001 * 109.46813 * 300.00424 * 4 3 2 36 36 H 1.08007 * 126.58539 * 359.97438 * 6 5 4 37 37 H 1.09004 * 110.36382 * 274.74730 * 11 10 8 38 38 H 1.08995 * 110.36660 * 36.95585 * 11 10 8 39 39 H 1.09001 * 110.93955 * 278.78879 * 12 11 10 40 40 H 1.09000 * 111.16715 * 154.86530 * 12 11 10 41 41 H 1.09000 * 110.71692 * 206.26545 * 13 12 11 42 42 H 1.09002 * 110.71723 * 83.17081 * 13 12 11 43 43 H 1.08998 * 109.47578 * 302.17676 * 16 14 10 44 44 H 1.09001 * 109.46802 * 62.17175 * 16 14 10 45 45 H 1.08996 * 109.46830 * 93.02410 * 18 17 16 46 46 H 1.08995 * 109.46788 * 213.01723 * 18 17 16 47 47 H 1.08994 * 109.46813 * 333.02105 * 18 17 16 48 48 H 0.96993 * 119.99775 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1313 2.5230 0.0000 6 6 5.0249 3.0052 0.8867 7 6 5.3056 4.2873 0.5082 8 6 6.2370 5.2042 1.1924 9 8 6.8335 4.8353 2.1857 10 7 6.4275 6.4505 0.7160 11 6 5.6959 7.0616 -0.4086 12 6 5.8044 8.5909 -0.1725 13 6 7.2424 8.7143 0.3972 14 6 7.4001 7.4254 1.2311 15 1 7.1939 7.6354 2.2807 16 6 8.8207 6.8780 1.0794 17 7 9.7757 7.8354 1.6430 18 6 10.4283 8.8173 0.7732 19 6 10.0583 7.8126 2.9826 20 1 9.8417 6.9294 3.5653 21 6 10.6233 8.9246 3.5919 22 7 10.5995 10.0915 2.9834 23 14 11.4173 8.7649 5.2752 24 1 12.8781 8.5509 5.1151 25 1 11.1814 10.0074 6.0535 26 1 10.8236 7.6096 5.9949 27 7 4.5854 4.5743 -0.5896 28 7 3.8813 3.5489 -0.9225 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 3.8575 0.6436 -0.8892 35 1 3.8567 0.6439 0.8908 36 1 5.4389 2.4792 1.7343 37 1 6.1632 6.7928 -1.3560 38 1 4.6525 6.7466 -0.3982 39 1 5.0657 8.9260 0.5555 40 1 5.7063 9.1415 -1.1081 41 1 7.3318 9.5968 1.0306 42 1 7.9754 8.7441 -0.4090 43 1 8.9028 5.9287 1.6086 44 1 9.0402 6.7251 0.0227 45 1 9.8518 9.7423 0.7730 46 1 11.4347 9.0165 1.1414 47 1 10.4839 8.4235 -0.2415 48 1 10.9940 10.8686 3.4093 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505430650.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:52 Heat of formation + Delta-G solvation = 34.757547 kcal Electronic energy + Delta-G solvation = -29466.471937 eV Core-core repulsion = 25366.506676 eV Total energy + Delta-G solvation = -4099.965261 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.31232 -40.97701 -39.07842 -38.62186 -37.11076 -35.96684 -33.54881 -32.70626 -32.10248 -31.03988 -30.26296 -27.99260 -27.41680 -26.78140 -25.41681 -25.08881 -23.38765 -22.84052 -22.61249 -21.75713 -20.27604 -18.77659 -18.59044 -17.82193 -17.53256 -17.49704 -17.01252 -16.78341 -16.48590 -16.19042 -15.91512 -15.58625 -15.50466 -15.13878 -15.07230 -14.83685 -14.55951 -14.27951 -13.89632 -13.62345 -13.47106 -13.35526 -13.21474 -13.04206 -12.81737 -12.78122 -12.48705 -12.42862 -12.32379 -12.23286 -12.00445 -11.95335 -11.77687 -11.62380 -11.49381 -11.39112 -11.12101 -10.79374 -10.60947 -10.41588 -9.68155 -8.77197 -7.83159 -5.25419 0.06944 0.59743 0.89088 1.45549 1.46191 1.56187 1.93622 2.21425 2.52825 2.66301 3.08875 3.30213 3.42138 3.62461 3.68536 3.77059 3.83281 3.91010 3.96440 4.08377 4.10035 4.18527 4.35149 4.43916 4.44482 4.48686 4.50636 4.54275 4.59658 4.73493 4.84368 4.84741 4.85294 4.95573 5.02208 5.09527 5.14425 5.19695 5.32877 5.36508 5.42457 5.52696 5.64621 5.75360 5.99004 6.32266 6.54112 6.80255 7.11223 7.17455 7.87808 8.29719 9.20757 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.020264 B = 0.002335 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.435353 B =11987.842173 C =12881.291302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.054 3.946 4 C 0.121 3.879 5 N -0.349 5.349 6 C 0.117 3.883 7 C -0.115 4.115 8 C 0.606 3.394 9 O -0.573 6.573 10 N -0.600 5.600 11 C 0.110 3.890 12 C -0.123 4.123 13 C -0.104 4.104 14 C 0.127 3.873 15 H 0.035 0.965 16 C 0.153 3.847 17 N -0.608 5.608 18 C 0.179 3.821 19 C -0.259 4.259 20 H 0.056 0.944 21 C -0.048 4.048 22 N -0.930 5.930 23 Si 0.963 3.037 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.277 1.277 27 N -0.210 5.210 28 N -0.081 5.081 29 H 0.050 0.950 30 H 0.104 0.896 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.121 0.879 35 H 0.144 0.856 36 H 0.235 0.765 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.072 0.928 40 H 0.112 0.888 41 H 0.059 0.941 42 H 0.075 0.925 43 H 0.030 0.970 44 H 0.056 0.944 45 H 0.014 0.986 46 H 0.019 0.981 47 H 0.027 0.973 48 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.940 -17.674 -10.472 29.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.320 6.320 3 C -0.024 4.024 4 C 0.001 3.999 5 N -0.134 5.134 6 C -0.040 4.040 7 C -0.254 4.254 8 C 0.393 3.607 9 O -0.452 6.452 10 N -0.332 5.332 11 C -0.012 4.012 12 C -0.161 4.161 13 C -0.142 4.142 14 C 0.022 3.978 15 H 0.054 0.946 16 C 0.026 3.974 17 N -0.332 5.332 18 C 0.034 3.966 19 C -0.389 4.389 20 H 0.074 0.926 21 C -0.243 4.243 22 N -0.577 5.577 23 Si 0.792 3.208 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.202 1.202 27 N -0.084 5.084 28 N -0.061 5.061 29 H 0.069 0.931 30 H 0.123 0.877 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.139 0.861 35 H 0.162 0.838 36 H 0.251 0.749 37 H 0.095 0.905 38 H 0.112 0.888 39 H 0.091 0.909 40 H 0.130 0.870 41 H 0.077 0.923 42 H 0.093 0.907 43 H 0.048 0.952 44 H 0.074 0.926 45 H 0.032 0.968 46 H 0.038 0.962 47 H 0.046 0.954 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -21.276 -17.620 -11.149 29.790 hybrid contribution 0.919 0.196 2.057 2.262 sum -20.357 -17.424 -9.091 28.296 Atomic orbital electron populations 1.22979 0.78600 1.04345 1.00999 1.87753 1.22008 1.26584 1.95694 1.22552 0.92129 0.85678 1.02059 1.22041 0.92839 0.76324 1.08722 1.50419 1.29868 1.14028 1.19118 1.23761 0.90855 0.93754 0.95645 1.21221 1.07840 0.96298 1.00028 1.16788 0.80787 0.80428 0.82677 1.90819 1.51175 1.76363 1.26841 1.48522 1.37887 1.12486 1.34320 1.22566 0.97562 0.92557 0.88525 1.22887 0.95428 0.94978 1.02801 1.22403 0.97906 0.95107 0.98785 1.22238 0.89642 0.89099 0.96867 0.94634 1.21075 0.87666 0.92129 0.96555 1.44088 1.46206 1.38011 1.04856 1.20619 0.95664 0.90776 0.89522 1.19384 1.36256 0.97180 0.86061 0.92565 1.25587 1.02810 0.94630 1.01298 1.70218 1.48843 0.98758 1.39843 0.85310 0.78555 0.76756 0.80216 1.21158 1.21727 1.20183 1.74685 1.04156 1.19303 1.10290 1.81896 1.20710 0.90904 1.12587 0.93147 0.87742 0.93183 0.92359 0.91994 0.86088 0.83848 0.74891 0.90488 0.88805 0.90887 0.86999 0.92265 0.90665 0.95203 0.92579 0.96770 0.96219 0.95437 0.94175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 113.37 1.25 1.43 16 2 O -0.40 -4.49 10.70 -148.98 -1.59 -6.08 16 3 C 0.05 0.54 6.14 71.98 0.44 0.98 16 4 C 0.12 1.02 6.91 86.38 0.60 1.61 16 5 N -0.35 -5.64 3.69 -347.09 -1.28 -6.92 16 6 C 0.12 2.24 11.27 83.85 0.95 3.18 16 7 C -0.11 -3.13 6.83 40.82 0.28 -2.86 16 8 C 0.61 21.51 7.59 86.69 0.66 22.17 16 9 O -0.57 -24.35 16.06 -4.02 -0.06 -24.42 16 10 N -0.60 -20.96 3.07 -791.38 -2.43 -23.39 16 11 C 0.11 2.96 5.96 86.93 0.52 3.48 16 12 C -0.12 -3.16 7.11 32.06 0.23 -2.93 16 13 C -0.10 -3.64 5.54 31.78 0.18 -3.46 16 14 C 0.13 5.23 3.08 45.34 0.14 5.37 16 15 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 16 C 0.15 6.99 5.13 86.38 0.44 7.44 16 17 N -0.61 -32.11 2.77 -726.95 -2.01 -34.12 16 18 C 0.18 8.92 7.89 127.77 1.01 9.93 16 19 C -0.26 -15.15 9.68 84.04 0.81 -14.34 16 20 H 0.06 3.40 7.88 -2.91 -0.02 3.37 16 21 C -0.05 -2.78 5.03 84.86 0.43 -2.36 16 22 N -0.93 -55.39 10.69 21.65 0.23 -55.16 16 23 Si 0.96 47.25 29.58 68.60 2.03 49.28 16 24 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 25 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 26 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 27 N -0.21 -5.51 9.53 -50.00 -0.48 -5.99 16 28 N -0.08 -1.81 13.65 37.02 0.51 -1.30 16 29 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.05 0.29 8.14 -2.39 -0.02 0.28 16 32 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.12 0.80 8.14 -2.38 -0.02 0.78 16 35 H 0.14 0.46 8.08 -2.39 -0.02 0.44 16 36 H 0.23 3.00 8.06 -2.91 -0.02 2.97 16 37 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 38 H 0.09 2.39 6.46 -2.39 -0.02 2.37 16 39 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 42 H 0.07 2.58 7.21 -2.39 -0.02 2.56 16 43 H 0.03 1.49 6.90 -2.39 -0.02 1.47 16 44 H 0.06 2.32 7.76 -2.39 -0.02 2.30 16 45 H 0.01 0.74 7.33 -2.39 -0.02 0.72 16 46 H 0.02 1.05 7.03 -2.39 -0.02 1.04 16 47 H 0.03 1.17 7.82 -2.39 -0.02 1.15 16 48 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -76.18 392.62 3.78 -72.41 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: 0.95 Total: 6.03 kcal Atomic # 6 Polarization: 21.74 SS G_CDS: 7.92 Total: 29.66 kcal Atomic # 7 Polarization: -121.42 SS G_CDS: -5.46 Total: -126.88 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -1.66 Total: -30.50 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.28 kcal Total: -76.18 3.78 -72.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505430650.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.166 kcal (2) G-P(sol) polarization free energy of solvation -76.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds