Wall clock time and date at job start Tue Mar 31 2020 21:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37361 * 125.83120 * 2 1 4 4 N 1.29394 * 108.83118 * 180.27036 * 3 2 1 5 5 N 1.40172 * 108.14227 * 359.97438 * 4 3 2 6 6 C 1.46497 * 126.35551 * 180.02562 * 5 4 3 7 7 C 1.50694 * 109.47261 * 267.19622 * 6 5 4 8 8 O 1.21289 * 119.99914 * 5.81041 * 7 6 5 9 9 N 1.34777 * 120.00408 * 185.80790 * 7 6 5 10 10 C 1.46499 * 120.00365 * 184.52691 * 9 7 6 11 11 C 1.53003 * 109.46890 * 55.69689 * 10 9 7 12 12 N 1.46498 * 109.47338 * 56.90824 * 11 10 9 13 13 C 1.36939 * 119.99928 * 183.85169 * 12 11 10 14 14 H 1.07991 * 120.00356 * 4.80789 * 13 12 11 15 15 C 1.38816 * 119.99455 * 184.81086 * 13 12 11 16 16 N 1.31618 * 119.99669 * 183.01889 * 15 13 12 17 17 Si 1.86793 * 120.00472 * 3.01883 * 15 13 12 18 18 H 1.48501 * 109.47358 * 90.34327 * 17 15 13 19 19 H 1.48501 * 109.47391 * 210.34819 * 17 15 13 20 20 H 1.48505 * 109.47041 * 330.34533 * 17 15 13 21 21 C 1.53000 * 109.46897 * 295.70069 * 10 9 7 22 22 C 1.52997 * 109.46771 * 299.99427 * 21 10 9 23 23 C 1.52997 * 109.47468 * 300.00540 * 22 21 10 24 24 C 1.52998 * 109.47211 * 59.99827 * 23 22 21 25 25 C 1.52990 * 109.47177 * 300.00165 * 24 23 22 26 26 C 1.34813 * 125.83605 * 180.31173 * 2 1 3 27 27 O 1.21822 * 126.29950 * 359.69941 * 26 2 1 28 28 H 1.09005 * 109.46384 * 269.68486 * 1 2 3 29 29 H 1.08996 * 109.47493 * 29.68545 * 1 2 3 30 30 H 1.09004 * 109.46992 * 149.69266 * 1 2 3 31 31 H 1.07998 * 125.58501 * 0.24342 * 3 2 1 32 32 H 1.09009 * 109.46617 * 27.19657 * 6 5 4 33 33 H 1.08996 * 109.47217 * 147.19420 * 6 5 4 34 34 H 0.96994 * 119.99459 * 4.52545 * 9 7 6 35 35 H 1.08998 * 109.46745 * 176.90708 * 11 10 9 36 36 H 1.08998 * 109.47332 * 296.90510 * 11 10 9 37 37 H 0.97001 * 120.00039 * 3.85008 * 12 11 10 38 38 H 0.97004 * 120.00219 * 180.02562 * 16 15 13 39 39 H 1.08994 * 109.47401 * 59.99769 * 21 10 9 40 40 H 1.09000 * 109.46656 * 179.97438 * 21 10 9 41 41 H 1.09004 * 109.47013 * 180.02562 * 22 21 10 42 42 H 1.09000 * 109.47165 * 60.00760 * 22 21 10 43 43 H 1.08999 * 109.46938 * 299.99729 * 23 22 21 44 44 H 1.09004 * 109.47051 * 180.02562 * 23 22 21 45 45 H 1.09003 * 109.46936 * 179.97438 * 24 23 22 46 46 H 1.09000 * 109.46736 * 60.00200 * 24 23 22 47 47 H 1.09000 * 109.47316 * 299.99680 * 25 24 23 48 48 H 1.09003 * 109.47530 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2691 1.1136 0.0000 4 7 3.5065 0.7353 -0.0058 5 7 3.5345 -0.6661 -0.0092 6 6 4.7314 -1.5108 -0.0153 7 6 5.0967 -1.8539 -1.4365 8 8 4.4890 -1.3502 -2.3574 9 7 6.0988 -2.7205 -1.6843 10 6 6.5199 -2.9785 -3.0635 11 6 6.8917 -1.6570 -3.7390 12 7 7.9388 -0.9891 -2.9620 13 6 8.3784 0.2539 -3.3320 14 1 7.9007 0.7748 -4.1485 15 6 9.4383 0.8444 -2.6574 16 7 9.8225 2.0629 -2.9735 17 14 10.3193 -0.0903 -1.3012 18 1 11.4503 -0.8572 -1.8826 19 1 10.8381 0.8701 -0.2944 20 1 9.3698 -1.0272 -0.6483 21 6 5.3732 -3.6389 -3.8317 22 6 5.0015 -4.9604 -3.1562 23 6 6.2159 -5.8910 -3.1531 24 6 7.3625 -5.2305 -2.3850 25 6 7.7343 -3.9091 -3.0604 26 6 2.2543 -1.0929 -0.0059 27 8 1.8806 -2.2524 -0.0071 28 1 -0.3632 -0.0057 1.0277 29 1 -0.3634 0.8927 -0.5089 30 1 -0.3633 -0.8873 -0.5186 31 1 1.9250 2.1373 0.0037 32 1 5.5569 -0.9745 0.4528 33 1 4.5321 -2.4273 0.5400 34 1 6.5412 -3.1732 -0.9494 35 1 7.2570 -1.8543 -4.7468 36 1 6.0122 -1.0152 -3.7905 37 1 8.3207 -1.4273 -2.1854 38 1 10.5633 2.4755 -2.5024 39 1 4.5081 -2.9760 -3.8339 40 1 5.6864 -3.8305 -4.8580 41 1 4.1848 -5.4311 -3.7037 42 1 4.6882 -4.7684 -2.1301 43 1 6.5291 -6.0830 -4.1793 44 1 5.9508 -6.8326 -2.6723 45 1 8.2275 -5.8937 -2.3824 46 1 7.0492 -5.0386 -1.3588 47 1 8.0476 -4.1011 -4.0866 48 1 8.5509 -3.4383 -2.5129 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506510674.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:44 Heat of formation + Delta-G solvation = 28.428474 kcal Electronic energy + Delta-G solvation = -31297.570216 eV Core-core repulsion = 27197.330505 eV Total energy + Delta-G solvation = -4100.239710 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.40539 -40.38682 -37.85803 -37.21642 -35.25371 -34.73923 -33.30418 -32.04041 -31.26700 -30.72165 -29.73212 -28.21441 -26.77643 -25.50383 -22.97922 -22.86487 -22.16040 -21.59698 -20.77316 -20.37476 -18.93422 -17.81535 -17.66215 -17.41832 -16.41792 -16.13238 -15.72712 -15.50656 -15.05435 -14.88938 -14.48023 -14.36231 -14.17157 -13.90811 -13.67645 -13.38984 -13.31045 -12.96242 -12.81431 -12.51835 -12.47773 -12.39836 -12.18928 -12.01347 -11.85920 -11.72662 -11.41272 -11.09104 -11.00017 -10.83784 -10.55335 -10.47488 -10.25707 -10.19995 -10.12862 -9.92240 -9.52509 -9.31373 -8.78855 -8.62295 -8.50673 -7.10408 -5.69171 -3.02757 1.65600 1.99739 2.66060 2.91316 3.04423 3.33764 3.39630 3.45668 3.51140 4.34302 4.63101 4.67027 4.72237 4.82295 4.83921 4.88261 4.94367 4.98726 5.12547 5.23088 5.25980 5.26765 5.36062 5.51629 5.58394 5.61572 5.64311 5.72571 5.76784 5.80703 5.88077 6.03396 6.07011 6.12235 6.23350 6.25766 6.35258 6.44734 6.47240 6.53233 6.57365 6.87114 7.06206 7.61157 7.77427 8.02825 8.10109 8.49419 8.53385 9.30016 10.01688 10.23145 11.49968 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009095 B = 0.004894 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3077.799919 B = 5719.807787 C = 7916.813333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.563 5.563 3 C 0.248 3.752 4 N -0.259 5.259 5 N -0.432 5.432 6 C 0.141 3.859 7 C 0.508 3.492 8 O -0.514 6.514 9 N -0.712 5.712 10 C 0.176 3.824 11 C 0.145 3.855 12 N -0.749 5.749 13 C -0.232 4.232 14 H 0.087 0.913 15 C 0.002 3.998 16 N -0.936 5.936 17 Si 0.886 3.114 18 H -0.286 1.286 19 H -0.292 1.292 20 H -0.282 1.282 21 C -0.126 4.126 22 C -0.113 4.113 23 C -0.118 4.118 24 C -0.120 4.120 25 C -0.120 4.120 26 C 0.652 3.348 27 O -0.559 6.559 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.231 0.769 32 H 0.127 0.873 33 H 0.116 0.884 34 H 0.394 0.606 35 H 0.028 0.972 36 H 0.055 0.945 37 H 0.358 0.642 38 H 0.257 0.743 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.056 0.944 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.056 0.944 45 H 0.062 0.938 46 H 0.058 0.942 47 H 0.080 0.920 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.008 -10.869 7.779 20.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.292 5.292 3 C -0.051 4.051 4 N -0.079 5.079 5 N -0.251 5.251 6 C 0.015 3.985 7 C 0.291 3.709 8 O -0.388 6.388 9 N -0.365 5.365 10 C 0.090 3.910 11 C 0.017 3.983 12 N -0.395 5.395 13 C -0.362 4.362 14 H 0.105 0.895 15 C -0.193 4.193 16 N -0.585 5.585 17 Si 0.717 3.283 18 H -0.213 1.213 19 H -0.219 1.219 20 H -0.208 1.208 21 C -0.164 4.164 22 C -0.151 4.151 23 C -0.155 4.155 24 C -0.157 4.157 25 C -0.158 4.158 26 C 0.351 3.649 27 O -0.433 6.433 28 H 0.089 0.911 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.247 0.753 32 H 0.145 0.855 33 H 0.134 0.866 34 H 0.228 0.772 35 H 0.045 0.955 36 H 0.073 0.927 37 H 0.191 0.809 38 H 0.068 0.932 39 H 0.100 0.900 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.099 0.901 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.655 -10.845 6.962 20.277 hybrid contribution 0.294 -0.766 1.312 1.547 sum -15.361 -11.611 8.274 20.958 Atomic orbital electron populations 1.21777 0.74404 1.04674 1.03212 1.45827 1.08713 1.06699 1.67979 1.25949 0.85762 0.94688 0.98732 1.77153 1.18010 0.91281 1.21420 1.48166 1.05307 1.03258 1.68410 1.21248 0.86067 0.94788 0.96402 1.20527 0.80314 0.78962 0.91047 1.90668 1.51580 1.51240 1.45329 1.45854 1.36644 1.45095 1.08867 1.20621 0.93458 0.95747 0.81131 1.21079 0.92870 0.90925 0.93438 1.42614 1.44936 1.19360 1.32586 1.19057 1.11121 0.91564 1.14461 0.89492 1.24654 0.98840 0.96419 0.99419 1.69706 1.30602 1.13677 1.44507 0.86540 0.79983 0.79110 0.82659 1.21272 1.21900 1.20842 1.21868 0.99361 0.96494 0.98719 1.21449 0.97128 0.95454 1.01054 1.21541 0.95554 0.97958 1.00468 1.21561 0.98251 0.96697 0.99216 1.21801 0.97040 0.94415 1.02585 1.16632 0.81960 0.85047 0.81249 1.91056 1.77789 1.15280 1.59183 0.91052 0.89372 0.89596 0.75315 0.85474 0.86567 0.77174 0.95452 0.92666 0.80861 0.93239 0.90013 0.91359 0.92485 0.92155 0.92034 0.92477 0.91894 0.92302 0.90143 0.90919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.69 11.05 59.85 0.66 1.35 16 2 N -0.56 -6.46 3.14 -130.10 -0.41 -6.87 16 3 C 0.25 2.61 12.66 -89.12 -1.13 1.49 16 4 N -0.26 -3.90 12.53 29.87 0.37 -3.53 16 5 N -0.43 -6.82 3.12 -66.31 -0.21 -7.03 16 6 C 0.14 2.01 6.86 -5.20 -0.04 1.97 16 7 C 0.51 8.65 7.30 -10.99 -0.08 8.57 16 8 O -0.51 -10.73 12.71 5.55 0.07 -10.66 16 9 N -0.71 -10.58 3.68 -47.61 -0.18 -10.76 16 10 C 0.18 2.78 0.32 -131.82 -0.04 2.74 16 11 C 0.14 3.01 4.83 -4.04 -0.02 3.00 16 12 N -0.75 -18.02 4.97 -59.91 -0.30 -18.32 16 13 C -0.23 -6.76 10.47 -15.06 -0.16 -6.92 16 14 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 15 C 0.00 0.05 5.50 -17.43 -0.10 -0.04 16 16 N -0.94 -30.00 13.97 55.49 0.78 -29.23 16 17 Si 0.89 22.19 27.86 -169.99 -4.74 17.45 16 18 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 19 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 20 H -0.28 -6.43 6.35 56.52 0.36 -6.07 16 21 C -0.13 -1.85 4.58 -26.73 -0.12 -1.97 16 22 C -0.11 -1.39 5.76 -26.73 -0.15 -1.55 16 23 C -0.12 -1.24 5.92 -26.73 -0.16 -1.40 16 24 C -0.12 -1.29 5.75 -26.74 -0.15 -1.45 16 25 C -0.12 -1.66 4.65 -26.74 -0.12 -1.78 16 26 C 0.65 10.28 8.60 -86.74 -0.75 9.54 16 27 O -0.56 -10.20 17.74 5.08 0.09 -10.11 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.68 8.08 -51.93 -0.42 0.26 16 31 H 0.23 1.12 8.06 -52.49 -0.42 0.69 16 32 H 0.13 1.66 8.14 -51.92 -0.42 1.24 16 33 H 0.12 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.39 4.73 7.19 -40.82 -0.29 4.44 16 35 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 1.32 6.12 -51.93 -0.32 1.00 16 37 H 0.36 8.21 4.21 -40.82 -0.17 8.03 16 38 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 39 H 0.08 1.42 6.34 -51.93 -0.33 1.10 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.79 7.60 -51.93 -0.39 0.39 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.06 0.59 6.78 -51.93 -0.35 0.24 16 47 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 48 H 0.07 1.11 6.98 -51.93 -0.36 0.75 16 LS Contribution 381.83 15.07 5.75 5.75 Total: -1.00 -40.30 381.83 -8.43 -48.74 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -7.31 Total: 11.02 kcal Atomic # 6 Polarization: 15.90 SS G_CDS: -2.36 Total: 13.54 kcal Atomic # 7 Polarization: -75.79 SS G_CDS: 0.06 Total: -75.73 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: 0.16 Total: -20.77 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.74 Total: 17.45 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -40.30 -8.43 -48.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506510674.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.165 kcal (2) G-P(sol) polarization free energy of solvation -40.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds