Wall clock time and date at job start Tue Mar 31 2020 21:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37361 * 125.83120 * 2 1 4 4 N 1.29394 * 108.83118 * 180.27036 * 3 2 1 5 5 N 1.40172 * 108.14227 * 359.97438 * 4 3 2 6 6 C 1.46497 * 126.35551 * 180.02562 * 5 4 3 7 7 C 1.50694 * 109.47261 * 267.19622 * 6 5 4 8 8 O 1.21289 * 119.99914 * 5.81041 * 7 6 5 9 9 N 1.34777 * 120.00408 * 185.80790 * 7 6 5 10 10 C 1.46499 * 120.00365 * 184.52691 * 9 7 6 11 11 C 1.53003 * 109.46890 * 55.69689 * 10 9 7 12 12 N 1.46498 * 109.47338 * 56.90824 * 11 10 9 13 13 C 1.36939 * 119.99928 * 183.85169 * 12 11 10 14 14 H 1.07991 * 120.00356 * 4.80789 * 13 12 11 15 15 C 1.38816 * 119.99455 * 184.81086 * 13 12 11 16 16 N 1.31618 * 119.99669 * 183.01889 * 15 13 12 17 17 Si 1.86793 * 120.00472 * 3.01883 * 15 13 12 18 18 H 1.48501 * 109.47358 * 90.34327 * 17 15 13 19 19 H 1.48501 * 109.47391 * 210.34819 * 17 15 13 20 20 H 1.48505 * 109.47041 * 330.34533 * 17 15 13 21 21 C 1.53000 * 109.46897 * 295.70069 * 10 9 7 22 22 C 1.52997 * 109.46771 * 299.99427 * 21 10 9 23 23 C 1.52997 * 109.47468 * 300.00540 * 22 21 10 24 24 C 1.52998 * 109.47211 * 59.99827 * 23 22 21 25 25 C 1.52990 * 109.47177 * 300.00165 * 24 23 22 26 26 C 1.34813 * 125.83605 * 180.31173 * 2 1 3 27 27 O 1.21822 * 126.29950 * 359.69941 * 26 2 1 28 28 H 1.09005 * 109.46384 * 269.68486 * 1 2 3 29 29 H 1.08996 * 109.47493 * 29.68545 * 1 2 3 30 30 H 1.09004 * 109.46992 * 149.69266 * 1 2 3 31 31 H 1.07998 * 125.58501 * 0.24342 * 3 2 1 32 32 H 1.09009 * 109.46617 * 27.19657 * 6 5 4 33 33 H 1.08996 * 109.47217 * 147.19420 * 6 5 4 34 34 H 0.96994 * 119.99459 * 4.52545 * 9 7 6 35 35 H 1.08998 * 109.46745 * 176.90708 * 11 10 9 36 36 H 1.08998 * 109.47332 * 296.90510 * 11 10 9 37 37 H 0.97001 * 120.00039 * 3.85008 * 12 11 10 38 38 H 0.97004 * 120.00219 * 180.02562 * 16 15 13 39 39 H 1.08994 * 109.47401 * 59.99769 * 21 10 9 40 40 H 1.09000 * 109.46656 * 179.97438 * 21 10 9 41 41 H 1.09004 * 109.47013 * 180.02562 * 22 21 10 42 42 H 1.09000 * 109.47165 * 60.00760 * 22 21 10 43 43 H 1.08999 * 109.46938 * 299.99729 * 23 22 21 44 44 H 1.09004 * 109.47051 * 180.02562 * 23 22 21 45 45 H 1.09003 * 109.46936 * 179.97438 * 24 23 22 46 46 H 1.09000 * 109.46736 * 60.00200 * 24 23 22 47 47 H 1.09000 * 109.47316 * 299.99680 * 25 24 23 48 48 H 1.09003 * 109.47530 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2691 1.1136 0.0000 4 7 3.5065 0.7353 -0.0058 5 7 3.5345 -0.6661 -0.0092 6 6 4.7314 -1.5108 -0.0153 7 6 5.0967 -1.8539 -1.4365 8 8 4.4890 -1.3502 -2.3574 9 7 6.0988 -2.7205 -1.6843 10 6 6.5199 -2.9785 -3.0635 11 6 6.8917 -1.6570 -3.7390 12 7 7.9388 -0.9891 -2.9620 13 6 8.3784 0.2539 -3.3320 14 1 7.9007 0.7748 -4.1485 15 6 9.4383 0.8444 -2.6574 16 7 9.8225 2.0629 -2.9735 17 14 10.3193 -0.0903 -1.3012 18 1 11.4503 -0.8572 -1.8826 19 1 10.8381 0.8701 -0.2944 20 1 9.3698 -1.0272 -0.6483 21 6 5.3732 -3.6389 -3.8317 22 6 5.0015 -4.9604 -3.1562 23 6 6.2159 -5.8910 -3.1531 24 6 7.3625 -5.2305 -2.3850 25 6 7.7343 -3.9091 -3.0604 26 6 2.2543 -1.0929 -0.0059 27 8 1.8806 -2.2524 -0.0071 28 1 -0.3632 -0.0057 1.0277 29 1 -0.3634 0.8927 -0.5089 30 1 -0.3633 -0.8873 -0.5186 31 1 1.9250 2.1373 0.0037 32 1 5.5569 -0.9745 0.4528 33 1 4.5321 -2.4273 0.5400 34 1 6.5412 -3.1732 -0.9494 35 1 7.2570 -1.8543 -4.7468 36 1 6.0122 -1.0152 -3.7905 37 1 8.3207 -1.4273 -2.1854 38 1 10.5633 2.4755 -2.5024 39 1 4.5081 -2.9760 -3.8339 40 1 5.6864 -3.8305 -4.8580 41 1 4.1848 -5.4311 -3.7037 42 1 4.6882 -4.7684 -2.1301 43 1 6.5291 -6.0830 -4.1793 44 1 5.9508 -6.8326 -2.6723 45 1 8.2275 -5.8937 -2.3824 46 1 7.0492 -5.0386 -1.3588 47 1 8.0476 -4.1011 -4.0866 48 1 8.5509 -3.4383 -2.5129 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506510674.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:43 Heat of formation + Delta-G solvation = -0.519592 kcal Electronic energy + Delta-G solvation = -31298.825498 eV Core-core repulsion = 27197.330505 eV Total energy + Delta-G solvation = -4101.494993 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.41878 -41.67281 -39.09509 -38.39777 -36.57140 -36.17935 -34.75406 -33.56682 -32.80143 -31.77560 -31.20872 -29.22099 -27.63326 -27.20889 -24.44983 -24.02301 -23.44598 -22.73302 -22.02624 -21.58459 -20.23065 -19.72619 -18.89873 -18.50998 -17.46545 -17.16678 -16.88467 -16.76250 -16.44646 -16.35910 -16.02947 -15.54171 -15.27793 -15.09256 -15.01044 -14.68902 -14.63006 -14.32687 -14.06526 -13.85491 -13.57836 -13.48339 -13.33209 -13.19692 -13.10453 -12.93586 -12.87722 -12.71927 -12.64153 -12.07586 -12.04054 -11.84716 -11.56589 -11.45852 -11.39247 -11.20326 -11.03416 -11.00776 -10.48505 -9.96914 -9.64408 -9.25253 -8.01501 -5.35086 0.67796 1.09534 1.33081 1.42055 1.48621 1.54665 1.62600 2.10474 2.37280 2.48850 3.28740 3.43666 3.50757 3.63095 3.79012 3.85486 3.92162 4.04269 4.07769 4.11614 4.19970 4.36750 4.40651 4.44875 4.52171 4.55565 4.57489 4.72662 4.77415 4.81485 4.82847 4.87949 5.00448 5.06258 5.12424 5.16089 5.22634 5.27084 5.34273 5.42643 5.50387 5.64885 5.66852 5.75614 6.20853 6.56464 6.61349 6.92543 7.08451 7.27805 7.81323 8.07532 9.20915 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009095 B = 0.004894 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3077.799919 B = 5719.807787 C = 7916.813333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.559 5.559 3 C 0.274 3.726 4 N -0.317 5.317 5 N -0.442 5.442 6 C 0.138 3.862 7 C 0.499 3.501 8 O -0.560 6.560 9 N -0.701 5.701 10 C 0.184 3.816 11 C 0.146 3.854 12 N -0.740 5.740 13 C -0.234 4.234 14 H 0.038 0.962 15 C -0.064 4.064 16 N -0.986 5.986 17 Si 0.962 3.038 18 H -0.275 1.275 19 H -0.296 1.296 20 H -0.244 1.244 21 C -0.120 4.120 22 C -0.106 4.106 23 C -0.112 4.112 24 C -0.113 4.113 25 C -0.117 4.117 26 C 0.635 3.365 27 O -0.595 6.595 28 H 0.092 0.908 29 H 0.126 0.874 30 H 0.070 0.930 31 H 0.285 0.715 32 H 0.139 0.861 33 H 0.145 0.855 34 H 0.412 0.588 35 H 0.021 0.979 36 H 0.019 0.981 37 H 0.368 0.632 38 H 0.258 0.742 39 H 0.047 0.953 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.053 0.947 43 H 0.066 0.934 44 H 0.078 0.922 45 H 0.084 0.916 46 H 0.070 0.930 47 H 0.081 0.919 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.141 -13.119 10.120 23.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.286 5.286 3 C -0.024 4.024 4 N -0.138 5.138 5 N -0.261 5.261 6 C 0.013 3.987 7 C 0.285 3.715 8 O -0.438 6.438 9 N -0.355 5.355 10 C 0.098 3.902 11 C 0.019 3.981 12 N -0.387 5.387 13 C -0.365 4.365 14 H 0.056 0.944 15 C -0.255 4.255 16 N -0.637 5.637 17 Si 0.788 3.212 18 H -0.201 1.201 19 H -0.222 1.222 20 H -0.168 1.168 21 C -0.159 4.159 22 C -0.144 4.144 23 C -0.150 4.150 24 C -0.151 4.151 25 C -0.155 4.155 26 C 0.334 3.666 27 O -0.473 6.473 28 H 0.111 0.889 29 H 0.145 0.855 30 H 0.089 0.911 31 H 0.301 0.699 32 H 0.156 0.844 33 H 0.163 0.837 34 H 0.249 0.751 35 H 0.039 0.961 36 H 0.037 0.963 37 H 0.203 0.797 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.092 0.908 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.085 0.915 44 H 0.097 0.903 45 H 0.102 0.898 46 H 0.089 0.911 47 H 0.100 0.900 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.823 -13.130 9.324 22.577 hybrid contribution 0.192 0.098 0.451 0.500 sum -15.632 -13.032 9.776 22.578 Atomic orbital electron populations 1.22168 0.71665 1.05846 1.05022 1.46125 1.10226 1.05761 1.66505 1.27060 0.84451 0.96215 0.94676 1.77130 1.20686 0.90904 1.25035 1.48322 1.05573 1.03860 1.68331 1.21417 0.86519 0.96184 0.94622 1.21150 0.80013 0.78484 0.91880 1.90652 1.53210 1.52966 1.46972 1.45768 1.35997 1.44618 1.09072 1.20455 0.95077 0.93286 0.81370 1.21078 0.90410 0.92927 0.93673 1.42411 1.45349 1.17800 1.33126 1.18921 1.11017 0.93254 1.13285 0.94410 1.25577 0.99716 0.97404 1.02811 1.69920 1.31378 1.15958 1.46442 0.85318 0.79028 0.78115 0.78702 1.20137 1.22228 1.16792 1.21782 0.97509 0.97274 0.99348 1.21400 0.98495 0.94248 1.00268 1.21522 0.94222 0.98096 1.01135 1.21556 0.99170 0.94983 0.99373 1.21789 0.95148 0.95454 1.03119 1.16972 0.82543 0.85578 0.81542 1.91003 1.78449 1.16829 1.61010 0.88908 0.85547 0.91121 0.69940 0.84369 0.83733 0.75102 0.96068 0.96335 0.79694 0.93340 0.93435 0.90847 0.91901 0.92782 0.91528 0.90335 0.89762 0.91097 0.90040 0.91842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.07 11.05 127.77 1.41 2.48 16 2 N -0.56 -12.12 3.14 -683.67 -2.15 -14.27 16 3 C 0.27 5.28 12.66 179.82 2.28 7.56 16 4 N -0.32 -9.46 12.53 -59.42 -0.74 -10.21 16 5 N -0.44 -14.04 3.12 -481.78 -1.50 -15.54 16 6 C 0.14 3.89 6.86 85.63 0.59 4.48 16 7 C 0.50 17.26 7.30 87.66 0.64 17.90 16 8 O -0.56 -24.64 12.71 -3.06 -0.04 -24.68 16 9 N -0.70 -20.22 3.68 -422.92 -1.56 -21.78 16 10 C 0.18 5.76 0.32 3.60 0.00 5.76 16 11 C 0.15 6.35 4.83 86.38 0.42 6.76 16 12 N -0.74 -36.05 4.97 -343.46 -1.71 -37.76 16 13 C -0.23 -14.16 10.47 84.03 0.88 -13.28 16 14 H 0.04 2.60 8.06 -2.92 -0.02 2.58 16 15 C -0.06 -3.88 5.50 84.86 0.47 -3.42 16 16 N -0.99 -65.17 13.97 21.65 0.30 -64.87 16 17 Si 0.96 45.26 27.86 68.60 1.91 47.18 16 18 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 19 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 20 H -0.24 -9.81 6.35 99.48 0.63 -9.18 16 21 C -0.12 -3.55 4.58 30.59 0.14 -3.41 16 22 C -0.11 -2.44 5.76 30.59 0.18 -2.26 16 23 C -0.11 -1.96 5.92 30.59 0.18 -1.78 16 24 C -0.11 -2.00 5.75 30.59 0.18 -1.82 16 25 C -0.12 -2.95 4.65 30.59 0.14 -2.81 16 26 C 0.63 20.10 8.60 178.99 1.54 21.64 16 27 O -0.60 -22.12 17.74 -4.74 -0.08 -22.20 16 28 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.07 1.06 8.08 -2.38 -0.02 1.05 16 31 H 0.29 1.68 8.06 -2.91 -0.02 1.65 16 32 H 0.14 3.51 8.14 -2.38 -0.02 3.49 16 33 H 0.15 3.11 8.14 -2.39 -0.02 3.09 16 34 H 0.41 8.85 7.19 -92.71 -0.67 8.18 16 35 H 0.02 0.94 8.14 -2.39 -0.02 0.93 16 36 H 0.02 0.95 6.12 -2.39 -0.01 0.94 16 37 H 0.37 16.32 4.21 -92.71 -0.39 15.93 16 38 H 0.26 16.09 8.31 -92.71 -0.77 15.32 16 39 H 0.05 1.74 6.34 -2.39 -0.02 1.73 16 40 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 42 H 0.05 1.32 7.60 -2.39 -0.02 1.30 16 43 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.07 1.10 6.78 -2.39 -0.02 1.09 16 47 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 48 H 0.06 1.74 6.98 -2.39 -0.02 1.72 16 Total: -1.00 -95.08 381.83 3.33 -91.76 By element: Atomic # 1 Polarization: 34.72 SS G_CDS: -0.14 Total: 34.58 kcal Atomic # 6 Polarization: 28.76 SS G_CDS: 9.04 Total: 37.80 kcal Atomic # 7 Polarization: -157.07 SS G_CDS: -7.36 Total: -164.43 kcal Atomic # 8 Polarization: -46.76 SS G_CDS: -0.12 Total: -46.88 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.91 Total: 47.18 kcal Total: -95.08 3.33 -91.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506510674.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.236 kcal (2) G-P(sol) polarization free energy of solvation -95.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds