Wall clock time and date at job start Tue Mar 31 2020 21:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 114.00064 * 2 1 4 4 C 1.53000 * 109.47258 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.46983 * 65.00293 * 4 3 2 6 6 C 1.36933 * 120.00194 * 270.00064 * 5 4 3 7 7 H 1.07999 * 120.00442 * 141.76162 * 6 5 4 8 8 C 1.38811 * 119.99798 * 321.75735 * 6 5 4 9 9 N 1.31622 * 119.99692 * 156.55987 * 8 6 5 10 10 Si 1.86794 * 120.00243 * 336.55843 * 8 6 5 11 11 H 1.48501 * 109.46905 * 95.53673 * 10 8 6 12 12 H 1.48503 * 109.47422 * 215.53581 * 10 8 6 13 13 H 1.48497 * 109.47154 * 335.53763 * 10 8 6 14 14 C 1.46504 * 119.99838 * 90.00007 * 5 4 3 15 15 C 1.53008 * 109.47191 * 87.29860 * 14 5 4 16 16 N 1.46491 * 109.46996 * 179.97438 * 15 14 5 17 17 C 1.34779 * 120.00132 * 180.02562 * 16 15 14 18 18 O 1.21293 * 119.99616 * 359.97438 * 17 16 15 19 19 C 1.50695 * 120.00556 * 180.02562 * 17 16 15 20 20 H 1.09007 * 109.45148 * 59.95363 * 19 17 16 21 21 C 1.53144 * 109.45585 * 179.89016 * 19 17 16 22 22 C 1.53458 * 109.30761 * 189.46794 * 21 19 17 23 23 C 1.50805 * 108.13684 * 311.30335 * 22 21 19 24 24 N 1.29835 * 128.52405 * 195.90229 * 23 22 21 25 25 N 1.28912 * 109.47769 * 179.84287 * 24 23 22 26 26 C 1.30830 * 109.73939 * 0.02699 * 25 24 23 27 27 N 1.34689 * 107.07541 * 0.04791 * 26 25 24 28 28 C 1.46256 * 128.85093 * 179.85208 * 27 26 25 29 29 H 1.09005 * 109.46949 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46539 * 299.99652 * 1 2 3 31 31 H 1.09001 * 109.47006 * 59.99326 * 1 2 3 32 32 H 1.09001 * 109.46969 * 60.00276 * 3 2 1 33 33 H 1.08995 * 109.47690 * 300.00119 * 3 2 1 34 34 H 1.09003 * 109.47587 * 185.00083 * 4 3 2 35 35 H 1.08997 * 109.47603 * 305.00276 * 4 3 2 36 36 H 0.97004 * 119.99840 * 179.97438 * 9 8 6 37 37 H 1.08999 * 109.47361 * 207.29478 * 14 5 4 38 38 H 1.08995 * 109.47067 * 327.29742 * 14 5 4 39 39 H 1.08999 * 109.46656 * 300.00049 * 15 14 5 40 40 H 1.09003 * 109.47118 * 59.99619 * 15 14 5 41 41 H 0.96999 * 120.00697 * 359.97438 * 16 15 14 42 42 H 1.08999 * 109.49633 * 309.42037 * 21 19 17 43 43 H 1.08999 * 109.49829 * 69.52205 * 21 19 17 44 44 H 1.08995 * 109.73763 * 191.63418 * 22 21 19 45 45 H 1.09000 * 109.75653 * 70.97959 * 22 21 19 46 46 H 1.08004 * 126.46268 * 180.08510 * 26 25 24 47 47 H 1.08996 * 109.59820 * 77.30646 * 28 27 26 48 48 H 1.09007 * 109.59421 * 316.85697 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.0967 -0.7969 -1.3370 7 1 3.8113 -1.3094 -2.2438 8 6 4.5864 -1.5183 -0.2569 9 7 4.2906 -2.7945 -0.1294 10 14 5.6653 -0.6780 1.0155 11 1 4.8282 -0.2350 2.1593 12 1 6.6970 -1.6314 1.4971 13 1 6.3284 0.5005 0.4017 14 6 4.2863 1.4008 -2.4148 15 6 5.7497 1.8426 -2.3486 16 7 6.0604 2.6784 -3.5109 17 6 7.3001 3.1845 -3.6649 18 8 8.1582 2.9483 -2.8409 19 6 7.6197 4.0448 -4.8602 20 1 6.9741 4.9231 -4.8583 21 6 9.0839 4.4884 -4.7925 22 6 9.3435 5.5480 -5.8718 23 6 8.7878 5.0352 -7.1765 24 7 9.0266 5.4600 -8.3799 25 7 8.3578 4.7536 -9.2258 26 6 7.6619 3.8457 -8.5908 27 7 7.9147 4.0010 -7.2770 28 6 7.3852 3.2414 -6.1449 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.6886 1.8463 0.8900 33 1 1.6887 1.8464 -0.8899 34 1 3.9786 2.1765 0.0889 35 1 3.8515 0.5682 0.8408 36 1 4.6331 -3.2987 0.6251 37 1 4.1202 0.8299 -3.3283 38 1 3.6411 2.2793 -2.4130 39 1 5.9158 2.4136 -1.4351 40 1 6.3949 0.9641 -2.3503 41 1 5.3743 2.8671 -4.1701 42 1 9.2907 4.9118 -3.8097 43 1 9.7326 3.6292 -4.9629 44 1 10.4155 5.7185 -5.9700 45 1 8.8462 6.4794 -5.6008 46 1 7.0086 3.1101 -9.0362 47 1 7.8990 2.2827 -6.0755 48 1 6.3165 3.0767 -6.2830 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001508054713.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:28 Heat of formation + Delta-G solvation = 27.450756 kcal Electronic energy + Delta-G solvation = -29391.288571 eV Core-core repulsion = 25291.006463 eV Total energy + Delta-G solvation = -4100.282107 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.59353 -40.17062 -37.60065 -37.11698 -36.06000 -34.52452 -33.91823 -31.86347 -31.48614 -29.97275 -29.35920 -27.70183 -25.76185 -25.46839 -24.20078 -23.22316 -22.58493 -22.56059 -20.92577 -20.40214 -19.66057 -17.78859 -17.29913 -16.90418 -16.56063 -16.02166 -15.95371 -15.88698 -15.38612 -15.05552 -14.81964 -14.70769 -14.57739 -14.35382 -14.22277 -13.99271 -13.64437 -13.36963 -12.79927 -12.59957 -12.45523 -12.28859 -11.94972 -11.90768 -11.67266 -11.59625 -11.46346 -11.42376 -11.12363 -10.82470 -10.66590 -10.64694 -10.48218 -10.38943 -10.01414 -9.86756 -9.60202 -9.46491 -8.99348 -8.96558 -8.49927 -6.97245 -5.98792 -3.41732 1.52311 2.03295 2.46164 2.60650 3.00795 3.30726 3.47388 3.49774 3.72323 3.95601 4.04142 4.11123 4.37990 4.48626 4.53015 4.57494 4.61807 4.73526 4.83070 4.92211 5.02771 5.15766 5.31692 5.32960 5.52494 5.55488 5.58891 5.60402 5.67898 5.70572 5.71898 5.85818 5.86087 5.91571 5.97280 6.05950 6.07978 6.19760 6.35249 6.43851 6.50859 6.60180 6.69981 7.41314 7.87458 8.03941 8.09851 8.36166 8.44337 8.90143 9.69169 10.02879 11.16649 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017147 B = 0.002411 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.591644 B =11612.293107 C =12185.709202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.347 6.347 3 C 0.048 3.952 4 C 0.133 3.867 5 N -0.589 5.589 6 C -0.262 4.262 7 H 0.077 0.923 8 C 0.049 3.951 9 N -0.891 5.891 10 Si 0.867 3.133 11 H -0.286 1.286 12 H -0.301 1.301 13 H -0.267 1.267 14 C 0.142 3.858 15 C 0.090 3.910 16 N -0.721 5.721 17 C 0.515 3.485 18 O -0.528 6.528 19 C -0.123 4.123 20 H 0.110 0.890 21 C -0.108 4.108 22 C -0.034 4.034 23 C 0.178 3.822 24 N -0.294 5.294 25 N -0.303 5.303 26 C 0.156 3.844 27 N -0.472 5.472 28 C 0.113 3.887 29 H 0.079 0.921 30 H 0.026 0.974 31 H 0.029 0.971 32 H 0.029 0.971 33 H 0.036 0.964 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.262 0.738 37 H 0.060 0.940 38 H 0.041 0.959 39 H 0.059 0.941 40 H 0.075 0.925 41 H 0.396 0.604 42 H 0.098 0.902 43 H 0.079 0.921 44 H 0.105 0.895 45 H 0.097 0.903 46 H 0.221 0.779 47 H 0.100 0.900 48 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.841 15.096 -8.984 17.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.264 6.264 3 C -0.031 4.031 4 C 0.007 3.993 5 N -0.311 5.311 6 C -0.390 4.390 7 H 0.094 0.906 8 C -0.152 4.152 9 N -0.531 5.531 10 Si 0.697 3.303 11 H -0.214 1.214 12 H -0.229 1.229 13 H -0.192 1.192 14 C 0.014 3.986 15 C -0.035 4.035 16 N -0.372 5.372 17 C 0.299 3.701 18 O -0.404 6.404 19 C -0.145 4.145 20 H 0.128 0.872 21 C -0.146 4.146 22 C -0.074 4.074 23 C -0.090 4.090 24 N -0.133 5.133 25 N -0.142 5.142 26 C -0.132 4.132 27 N -0.163 5.163 28 C -0.010 4.010 29 H 0.097 0.903 30 H 0.044 0.956 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.060 0.940 39 H 0.077 0.923 40 H 0.093 0.907 41 H 0.229 0.771 42 H 0.117 0.883 43 H 0.098 0.902 44 H 0.123 0.877 45 H 0.115 0.885 46 H 0.237 0.763 47 H 0.118 0.882 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.130 15.330 -9.424 18.121 hybrid contribution -0.716 -0.237 1.545 1.720 sum 1.414 15.094 -7.878 17.085 Atomic orbital electron populations 1.22649 0.83743 1.01937 0.98267 1.88311 1.16948 1.26383 1.94788 1.23196 0.97140 0.85166 0.97604 1.21340 0.90512 0.96597 0.90863 1.43939 1.75207 1.03588 1.08327 1.18560 1.38368 0.79357 1.02743 0.90570 1.25361 0.97431 0.94799 0.97649 1.69883 1.43974 1.08600 1.30595 0.87101 0.81505 0.79678 0.82034 1.21398 1.22865 1.19175 1.21103 0.90523 0.94187 0.92773 1.22568 1.00840 0.93826 0.86308 1.46210 1.11619 1.51953 1.27460 1.20047 0.82881 0.80460 0.86740 1.90766 1.46740 1.58773 1.44073 1.21717 1.00795 0.99576 0.92425 0.87215 1.21569 0.93448 0.99412 1.00193 1.20292 1.02618 0.98762 0.85713 1.24889 0.95126 0.90667 0.98282 1.74080 1.20050 1.22281 0.96938 1.74495 1.08824 1.05329 1.25521 1.26323 1.03801 1.02840 0.80208 1.46152 1.34997 1.27015 1.08127 1.21982 1.01302 0.95153 0.82577 0.90270 0.95559 0.95252 0.95282 0.94578 0.92754 0.91762 0.92807 0.92115 0.94026 0.92286 0.90677 0.77064 0.88330 0.90194 0.87687 0.88477 0.76312 0.88174 0.87707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.35 -7.33 10.18 -35.23 -0.36 -7.69 16 3 C 0.05 0.87 6.28 37.16 0.23 1.10 16 4 C 0.13 2.65 4.96 -4.04 -0.02 2.63 16 5 N -0.59 -12.55 2.04 -173.24 -0.35 -12.91 16 6 C -0.26 -6.85 9.39 -15.06 -0.14 -6.99 16 7 H 0.08 2.18 8.06 -52.49 -0.42 1.75 16 8 C 0.05 1.37 5.28 -17.43 -0.09 1.28 16 9 N -0.89 -26.61 13.97 55.49 0.78 -25.83 16 10 Si 0.87 21.60 25.16 -169.99 -4.28 17.33 16 11 H -0.29 -7.00 6.67 56.52 0.38 -6.63 16 12 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 13 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 14 C 0.14 2.29 5.78 -4.04 -0.02 2.26 16 15 C 0.09 1.41 6.00 -4.04 -0.02 1.39 16 16 N -0.72 -7.83 5.46 -60.29 -0.33 -8.16 16 17 C 0.52 5.85 7.14 -10.99 -0.08 5.77 16 18 O -0.53 -8.55 15.83 5.55 0.09 -8.47 16 19 C -0.12 -0.90 2.54 -91.53 -0.23 -1.13 16 20 H 0.11 0.62 8.12 -51.93 -0.42 0.20 16 21 C -0.11 -0.82 4.68 -26.42 -0.12 -0.94 16 22 C -0.03 -0.24 6.34 -27.59 -0.17 -0.42 16 23 C 0.18 1.79 7.75 -155.30 -1.20 0.59 16 24 N -0.29 -3.88 12.21 32.76 0.40 -3.48 16 25 N -0.30 -3.89 12.23 29.58 0.36 -3.52 16 26 C 0.16 1.39 12.83 -90.42 -1.16 0.23 16 27 N -0.47 -3.95 3.11 -115.52 -0.36 -4.31 16 28 C 0.11 0.70 6.14 -4.01 -0.02 0.68 16 29 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.93 8.07 -51.93 -0.42 0.51 16 35 H 0.06 1.48 3.45 -51.93 -0.18 1.30 16 36 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 37 H 0.06 0.96 8.02 -51.93 -0.42 0.55 16 38 H 0.04 0.57 8.09 -51.93 -0.42 0.14 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 41 H 0.40 2.87 8.12 -40.82 -0.33 2.54 16 42 H 0.10 0.79 7.79 -51.93 -0.40 0.38 16 43 H 0.08 0.70 8.12 -51.93 -0.42 0.27 16 44 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.22 1.01 8.06 -52.48 -0.42 0.58 16 47 H 0.10 0.66 8.12 -51.93 -0.42 0.24 16 48 H 0.10 0.39 7.87 -51.92 -0.41 -0.02 16 LS Contribution 390.63 15.07 5.89 5.89 Total: -1.00 -36.86 390.63 -7.77 -44.63 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -7.65 Total: -1.55 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: -1.95 Total: 8.06 kcal Atomic # 7 Polarization: -58.70 SS G_CDS: 0.49 Total: -58.20 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -0.27 Total: -16.16 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.28 Total: 17.33 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.86 -7.77 -44.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508054713.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.085 kcal (2) G-P(sol) polarization free energy of solvation -36.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds