Wall clock time and date at job start Tue Mar 31 2020 21:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 114.00064 * 2 1 4 4 C 1.53000 * 109.47258 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.46983 * 65.00293 * 4 3 2 6 6 C 1.36933 * 120.00194 * 270.00064 * 5 4 3 7 7 H 1.07999 * 120.00442 * 141.76162 * 6 5 4 8 8 C 1.38811 * 119.99798 * 321.75735 * 6 5 4 9 9 N 1.31622 * 119.99692 * 156.55987 * 8 6 5 10 10 Si 1.86794 * 120.00243 * 336.55843 * 8 6 5 11 11 H 1.48501 * 109.46905 * 95.53673 * 10 8 6 12 12 H 1.48503 * 109.47422 * 215.53581 * 10 8 6 13 13 H 1.48497 * 109.47154 * 335.53763 * 10 8 6 14 14 C 1.46504 * 119.99838 * 90.00007 * 5 4 3 15 15 C 1.53008 * 109.47191 * 87.29860 * 14 5 4 16 16 N 1.46491 * 109.46996 * 179.97438 * 15 14 5 17 17 C 1.34779 * 120.00132 * 180.02562 * 16 15 14 18 18 O 1.21293 * 119.99616 * 359.97438 * 17 16 15 19 19 C 1.50695 * 120.00556 * 180.02562 * 17 16 15 20 20 H 1.09007 * 109.45148 * 59.95363 * 19 17 16 21 21 C 1.53144 * 109.45585 * 179.89016 * 19 17 16 22 22 C 1.53458 * 109.30761 * 189.46794 * 21 19 17 23 23 C 1.50805 * 108.13684 * 311.30335 * 22 21 19 24 24 N 1.29835 * 128.52405 * 195.90229 * 23 22 21 25 25 N 1.28912 * 109.47769 * 179.84287 * 24 23 22 26 26 C 1.30830 * 109.73939 * 0.02699 * 25 24 23 27 27 N 1.34689 * 107.07541 * 0.04791 * 26 25 24 28 28 C 1.46256 * 128.85093 * 179.85208 * 27 26 25 29 29 H 1.09005 * 109.46949 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46539 * 299.99652 * 1 2 3 31 31 H 1.09001 * 109.47006 * 59.99326 * 1 2 3 32 32 H 1.09001 * 109.46969 * 60.00276 * 3 2 1 33 33 H 1.08995 * 109.47690 * 300.00119 * 3 2 1 34 34 H 1.09003 * 109.47587 * 185.00083 * 4 3 2 35 35 H 1.08997 * 109.47603 * 305.00276 * 4 3 2 36 36 H 0.97004 * 119.99840 * 179.97438 * 9 8 6 37 37 H 1.08999 * 109.47361 * 207.29478 * 14 5 4 38 38 H 1.08995 * 109.47067 * 327.29742 * 14 5 4 39 39 H 1.08999 * 109.46656 * 300.00049 * 15 14 5 40 40 H 1.09003 * 109.47118 * 59.99619 * 15 14 5 41 41 H 0.96999 * 120.00697 * 359.97438 * 16 15 14 42 42 H 1.08999 * 109.49633 * 309.42037 * 21 19 17 43 43 H 1.08999 * 109.49829 * 69.52205 * 21 19 17 44 44 H 1.08995 * 109.73763 * 191.63418 * 22 21 19 45 45 H 1.09000 * 109.75653 * 70.97959 * 22 21 19 46 46 H 1.08004 * 126.46268 * 180.08510 * 26 25 24 47 47 H 1.08996 * 109.59820 * 77.30646 * 28 27 26 48 48 H 1.09007 * 109.59421 * 316.85697 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.0967 -0.7969 -1.3370 7 1 3.8113 -1.3094 -2.2438 8 6 4.5864 -1.5183 -0.2569 9 7 4.2906 -2.7945 -0.1294 10 14 5.6653 -0.6780 1.0155 11 1 4.8282 -0.2350 2.1593 12 1 6.6970 -1.6314 1.4971 13 1 6.3284 0.5005 0.4017 14 6 4.2863 1.4008 -2.4148 15 6 5.7497 1.8426 -2.3486 16 7 6.0604 2.6784 -3.5109 17 6 7.3001 3.1845 -3.6649 18 8 8.1582 2.9483 -2.8409 19 6 7.6197 4.0448 -4.8602 20 1 6.9741 4.9231 -4.8583 21 6 9.0839 4.4884 -4.7925 22 6 9.3435 5.5480 -5.8718 23 6 8.7878 5.0352 -7.1765 24 7 9.0266 5.4600 -8.3799 25 7 8.3578 4.7536 -9.2258 26 6 7.6619 3.8457 -8.5908 27 7 7.9147 4.0010 -7.2770 28 6 7.3852 3.2414 -6.1449 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.6886 1.8463 0.8900 33 1 1.6887 1.8464 -0.8899 34 1 3.9786 2.1765 0.0889 35 1 3.8515 0.5682 0.8408 36 1 4.6331 -3.2987 0.6251 37 1 4.1202 0.8299 -3.3283 38 1 3.6411 2.2793 -2.4130 39 1 5.9158 2.4136 -1.4351 40 1 6.3949 0.9641 -2.3503 41 1 5.3743 2.8671 -4.1701 42 1 9.2907 4.9118 -3.8097 43 1 9.7326 3.6292 -4.9629 44 1 10.4155 5.7185 -5.9700 45 1 8.8462 6.4794 -5.6008 46 1 7.0086 3.1101 -9.0362 47 1 7.8990 2.2827 -6.0755 48 1 6.3165 3.0767 -6.2830 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001508054713.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:27 Heat of formation + Delta-G solvation = 0.918487 kcal Electronic energy + Delta-G solvation = -29392.439096 eV Core-core repulsion = 25291.006463 eV Total energy + Delta-G solvation = -4101.432633 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -44.30176 -41.10492 -39.04853 -37.95530 -37.44690 -35.76830 -34.60355 -33.69586 -32.42350 -31.15913 -30.20881 -29.14757 -27.11350 -26.26337 -25.44184 -24.37343 -23.81076 -23.28986 -21.99691 -21.71283 -20.43774 -18.81002 -18.49047 -18.05757 -17.53689 -17.31259 -17.18671 -16.82348 -16.63776 -16.29389 -15.98860 -15.67200 -15.44875 -15.41012 -15.20048 -15.03001 -14.96091 -14.64494 -14.26701 -14.09716 -13.55679 -13.26215 -13.09174 -12.98383 -12.94929 -12.71844 -12.62842 -12.36665 -12.27896 -12.27027 -12.06079 -11.87516 -11.68812 -11.46691 -11.37751 -11.12453 -11.01594 -10.56171 -10.31914 -10.21369 -10.09435 -8.76124 -8.11035 -5.47274 0.86839 1.30828 1.34634 1.43515 1.50320 1.63782 1.84815 2.07978 2.47655 3.10649 3.11800 3.16221 3.31962 3.40134 3.50808 3.62061 3.86357 3.99751 4.07693 4.18479 4.24206 4.26815 4.27197 4.41409 4.43822 4.47484 4.58412 4.59309 4.63372 4.66877 4.70241 4.74950 4.76215 4.91456 4.95152 4.97477 5.04572 5.08844 5.11998 5.21197 5.23738 5.45977 5.91015 6.01649 6.26650 6.54273 6.62165 7.05420 7.23413 7.70371 7.70841 8.09430 9.09215 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017147 B = 0.002411 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.591644 B =11612.293107 C =12185.709202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.400 6.400 3 C 0.049 3.951 4 C 0.123 3.877 5 N -0.603 5.603 6 C -0.230 4.230 7 H 0.042 0.958 8 C -0.008 4.008 9 N -0.945 5.945 10 Si 0.925 3.075 11 H -0.281 1.281 12 H -0.318 1.318 13 H -0.257 1.257 14 C 0.145 3.855 15 C 0.107 3.893 16 N -0.705 5.705 17 C 0.519 3.481 18 O -0.579 6.579 19 C -0.109 4.109 20 H 0.139 0.861 21 C -0.104 4.104 22 C -0.027 4.027 23 C 0.176 3.824 24 N -0.339 5.339 25 N -0.352 5.352 26 C 0.170 3.830 27 N -0.469 5.469 28 C 0.113 3.887 29 H 0.074 0.926 30 H 0.049 0.951 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.089 0.911 35 H 0.031 0.969 36 H 0.257 0.743 37 H 0.064 0.936 38 H 0.083 0.917 39 H 0.046 0.954 40 H 0.034 0.966 41 H 0.419 0.581 42 H 0.095 0.905 43 H 0.063 0.937 44 H 0.110 0.890 45 H 0.117 0.883 46 H 0.260 0.740 47 H 0.096 0.904 48 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.659 17.980 -9.624 20.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.319 6.319 3 C -0.029 4.029 4 C -0.002 4.002 5 N -0.325 5.325 6 C -0.360 4.360 7 H 0.060 0.940 8 C -0.205 4.205 9 N -0.589 5.589 10 Si 0.755 3.245 11 H -0.208 1.208 12 H -0.248 1.248 13 H -0.181 1.181 14 C 0.019 3.981 15 C -0.020 4.020 16 N -0.358 5.358 17 C 0.305 3.695 18 O -0.458 6.458 19 C -0.130 4.130 20 H 0.157 0.843 21 C -0.143 4.143 22 C -0.066 4.066 23 C -0.093 4.093 24 N -0.178 5.178 25 N -0.190 5.190 26 C -0.119 4.119 27 N -0.160 5.160 28 C -0.009 4.009 29 H 0.092 0.908 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.107 0.893 35 H 0.049 0.951 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.101 0.899 39 H 0.064 0.936 40 H 0.052 0.948 41 H 0.256 0.744 42 H 0.114 0.886 43 H 0.082 0.918 44 H 0.128 0.872 45 H 0.135 0.865 46 H 0.275 0.725 47 H 0.115 0.885 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.600 18.296 -10.111 20.913 hybrid contribution -0.327 -1.090 1.650 2.005 sum 0.273 17.206 -8.461 19.176 Atomic orbital electron populations 1.22785 0.81370 1.02384 1.00228 1.88230 1.19808 1.28588 1.95246 1.23198 0.95327 0.84479 0.99906 1.21473 0.92507 0.97365 0.88848 1.44026 1.75918 1.02378 1.10207 1.18416 1.35094 0.81810 1.00686 0.93993 1.25871 0.99392 0.95174 1.00038 1.70011 1.46668 1.10359 1.31881 0.86156 0.79535 0.78447 0.80351 1.20818 1.24781 1.18081 1.21199 0.91312 0.94908 0.90723 1.21990 0.99538 0.92829 0.87660 1.45880 1.12438 1.50881 1.26601 1.20633 0.81978 0.79792 0.87097 1.90760 1.48237 1.60568 1.46227 1.21616 1.00980 0.99655 0.90785 0.84319 1.21504 0.93559 0.99021 1.00188 1.20363 1.03127 0.99097 0.84029 1.25321 0.94880 0.90764 0.98324 1.73982 1.21598 1.23931 0.98249 1.74397 1.10682 1.07171 1.26799 1.27049 1.02632 1.01995 0.80189 1.46243 1.34579 1.26665 1.08500 1.22152 1.03317 0.94248 0.81209 0.90778 0.93289 0.93391 0.92625 0.92338 0.89283 0.95055 0.93446 0.91760 0.89861 0.93578 0.94764 0.74382 0.88631 0.91772 0.87215 0.86469 0.72473 0.88529 0.84159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 11.01 113.37 1.25 2.10 16 2 O -0.40 -16.33 10.18 -148.98 -1.52 -17.85 16 3 C 0.05 1.61 6.28 71.98 0.45 2.07 16 4 C 0.12 4.61 4.96 86.38 0.43 5.04 16 5 N -0.60 -24.67 2.04 -702.00 -1.43 -26.10 16 6 C -0.23 -12.14 9.39 84.03 0.79 -11.35 16 7 H 0.04 2.48 8.06 -2.91 -0.02 2.45 16 8 C -0.01 -0.47 5.28 84.86 0.45 -0.02 16 9 N -0.94 -58.80 13.97 21.65 0.30 -58.50 16 10 Si 0.92 45.95 25.16 68.60 1.73 47.67 16 11 H -0.28 -13.49 6.67 99.48 0.66 -12.82 16 12 H -0.32 -16.52 7.11 99.48 0.71 -15.81 16 13 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 14 C 0.14 4.21 5.78 86.38 0.50 4.71 16 15 C 0.11 3.11 6.00 86.38 0.52 3.63 16 16 N -0.71 -12.90 5.46 -463.05 -2.53 -15.42 16 17 C 0.52 10.43 7.14 87.66 0.63 11.06 16 18 O -0.58 -18.16 15.83 -3.07 -0.05 -18.21 16 19 C -0.11 -1.21 2.54 -11.39 -0.03 -1.24 16 20 H 0.14 0.85 8.12 -2.38 -0.02 0.83 16 21 C -0.10 -1.38 4.68 30.80 0.14 -1.23 16 22 C -0.03 -0.32 6.34 30.03 0.19 -0.13 16 23 C 0.18 3.21 7.75 138.14 1.07 4.28 16 24 N -0.34 -8.68 12.21 -50.27 -0.61 -9.30 16 25 N -0.35 -8.69 12.23 -60.32 -0.74 -9.43 16 26 C 0.17 2.58 12.83 180.28 2.31 4.90 16 27 N -0.47 -6.48 3.11 -519.39 -1.62 -8.10 16 28 C 0.11 0.98 6.14 86.53 0.53 1.51 16 29 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 30 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.09 2.68 8.07 -2.39 -0.02 2.66 16 35 H 0.03 1.40 3.45 -2.39 -0.01 1.39 16 36 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 37 H 0.06 1.85 8.02 -2.39 -0.02 1.83 16 38 H 0.08 1.80 8.09 -2.39 -0.02 1.78 16 39 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.42 3.96 8.12 -92.71 -0.75 3.21 16 42 H 0.10 1.37 7.79 -2.39 -0.02 1.35 16 43 H 0.06 1.06 8.12 -2.39 -0.02 1.04 16 44 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.26 1.38 8.06 -2.91 -0.02 1.35 16 47 H 0.10 0.98 8.12 -2.39 -0.02 0.96 16 48 H 0.14 0.26 7.87 -2.38 -0.02 0.24 16 Total: -1.00 -86.63 390.63 2.93 -83.70 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: 0.17 Total: 6.23 kcal Atomic # 6 Polarization: 16.09 SS G_CDS: 9.23 Total: 25.31 kcal Atomic # 7 Polarization: -120.22 SS G_CDS: -6.63 Total: -126.85 kcal Atomic # 8 Polarization: -34.50 SS G_CDS: -1.56 Total: -36.06 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.73 Total: 47.67 kcal Total: -86.63 2.93 -83.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508054713.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.613 kcal (2) G-P(sol) polarization free energy of solvation -86.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds