Wall clock time and date at job start Tue Mar 31 2020 21:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34778 * 119.99801 * 2 1 4 4 O 1.21284 * 119.99827 * 179.97438 * 3 2 1 5 5 C 1.50693 * 120.00204 * 0.02562 * 3 2 1 6 6 O 1.42907 * 109.47518 * 180.02562 * 5 3 2 7 7 C 1.42892 * 114.00217 * 180.02562 * 6 5 3 8 8 C 1.50703 * 109.47034 * 180.02562 * 7 6 5 9 9 N 1.30518 * 126.34394 * 269.95253 * 8 7 6 10 10 N 1.28594 * 109.67490 * 180.02562 * 9 8 7 11 11 C 1.30521 * 109.66850 * 359.72288 * 10 9 8 12 12 N 1.35490 * 126.34710 * 89.99609 * 8 7 6 13 13 C 1.46496 * 126.98325 * 359.96794 * 12 8 7 14 14 C 1.46496 * 120.00281 * 179.97438 * 2 1 3 15 15 C 1.53039 * 109.45825 * 60.06732 * 14 2 1 16 16 C 1.53197 * 109.31401 * 178.61678 * 15 14 2 17 17 N 1.46926 * 108.77398 * 54.63193 * 16 15 14 18 18 C 1.36936 * 120.62549 * 126.41567 * 17 16 15 19 19 H 1.07999 * 120.00542 * 331.82180 * 18 17 16 20 20 C 1.38820 * 119.99977 * 151.82225 * 18 17 16 21 21 N 1.31618 * 119.99848 * 343.08267 * 20 18 17 22 22 Si 1.86793 * 120.00114 * 163.07639 * 20 18 17 23 23 H 1.48504 * 109.46983 * 60.00233 * 22 20 18 24 24 H 1.48504 * 109.47048 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47550 * 300.00165 * 22 20 18 26 26 C 1.46919 * 118.74315 * 306.39321 * 17 16 15 27 27 C 1.53041 * 109.46011 * 300.00279 * 14 2 1 28 28 H 1.08992 * 109.47284 * 89.99929 * 1 2 3 29 29 H 1.09002 * 109.46620 * 210.00389 * 1 2 3 30 30 H 1.09007 * 109.46837 * 329.99699 * 1 2 3 31 31 H 1.08997 * 109.47239 * 60.00014 * 5 3 2 32 32 H 1.09000 * 109.47222 * 300.00220 * 5 3 2 33 33 H 1.08994 * 109.47682 * 59.99776 * 7 6 5 34 34 H 1.09013 * 109.47073 * 299.99701 * 7 6 5 35 35 H 1.08002 * 126.34481 * 180.30198 * 11 10 9 36 36 H 1.08996 * 109.47347 * 89.99798 * 13 12 8 37 37 H 1.08995 * 109.46833 * 329.99903 * 13 12 8 38 38 H 1.09003 * 109.47125 * 209.99917 * 13 12 8 39 39 H 1.09003 * 109.46596 * 180.02562 * 14 2 1 40 40 H 1.09002 * 109.49732 * 298.56494 * 15 14 2 41 41 H 1.09001 * 109.49560 * 58.66458 * 15 14 2 42 42 H 1.09005 * 109.58286 * 294.85106 * 16 15 14 43 43 H 1.08998 * 109.70385 * 174.49665 * 16 15 14 44 44 H 0.96992 * 120.00382 * 179.97438 * 21 20 18 45 45 H 1.09003 * 109.58898 * 293.82696 * 26 17 16 46 46 H 1.08994 * 109.70745 * 173.46365 * 26 17 16 47 47 H 1.09003 * 109.49544 * 301.33311 * 27 14 2 48 48 H 1.08994 * 109.50234 * 61.42787 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 0.0006 6 8 2.3140 3.5585 -0.0001 7 6 1.6994 4.8486 0.0009 8 6 2.7661 5.9131 -0.0006 9 7 3.3146 6.4601 1.0499 10 7 4.1858 7.3305 0.6798 11 6 4.2369 7.3741 -0.6237 12 7 3.3329 6.4804 -1.0927 13 6 3.0338 6.1832 -2.4957 14 6 2.1976 -1.2687 0.0006 15 6 1.8289 -2.0707 -1.2496 16 6 2.6226 -3.3810 -1.2632 17 7 2.3850 -4.0909 0.0011 18 6 1.9520 -5.3900 0.0010 19 1 1.3629 -5.7629 -0.8238 20 6 2.2704 -6.2278 1.0611 21 7 3.2414 -5.9028 1.8881 22 14 1.3207 -7.8163 1.3139 23 1 1.4730 -8.6802 0.1157 24 1 1.8504 -8.5253 2.5065 25 1 -0.1167 -7.5062 1.5210 26 6 2.6213 -3.3807 1.2653 27 6 1.8276 -2.0704 1.2506 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 0.7591 2.5298 0.8908 32 1 0.7584 2.5302 -0.8891 33 1 1.0802 4.9554 0.8915 34 1 1.0783 4.9559 -0.8885 35 1 4.8789 8.0072 -1.2182 36 1 2.2334 6.8365 -2.8429 37 1 2.7200 5.1435 -2.5878 38 1 3.9257 6.3485 -3.1002 39 1 3.2692 -1.0693 0.0009 40 1 0.7617 -2.2920 -1.2383 41 1 2.0711 -1.4894 -2.1393 42 1 3.6857 -3.1632 -1.3657 43 1 2.2945 -4.0008 -2.0976 44 1 3.4636 -6.4880 2.6290 45 1 3.6843 -3.1628 1.3689 46 1 2.2917 -3.9981 2.1009 47 1 2.0689 -1.4889 2.1404 48 1 0.7605 -2.2916 1.2383 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566613214.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:52 Heat of formation + Delta-G solvation = 39.359137 kcal Electronic energy + Delta-G solvation = -29223.661757 eV Core-core repulsion = 25123.896036 eV Total energy + Delta-G solvation = -4099.765721 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.46193 -40.12457 -38.29489 -37.17334 -35.44009 -35.14798 -32.62960 -31.98460 -30.41369 -29.77529 -28.54719 -28.03927 -26.94577 -26.52946 -24.79264 -22.76120 -22.23069 -22.05415 -21.40052 -19.55558 -18.89228 -17.85887 -17.46348 -17.00288 -16.78489 -16.64528 -16.27585 -15.73605 -15.57488 -15.04334 -14.85934 -14.64668 -13.93629 -13.90347 -13.63272 -13.58743 -13.28941 -13.21570 -13.03257 -12.71733 -12.51582 -12.39531 -12.36441 -12.13648 -11.82525 -11.50523 -11.13523 -10.83782 -10.73647 -10.73399 -10.59836 -10.37007 -10.25410 -10.22655 -10.11105 -9.81881 -9.73720 -9.67440 -9.46069 -8.57128 -8.35189 -6.70587 -5.80511 -3.23667 1.25892 2.03207 2.41047 2.62761 2.81876 3.36756 3.42929 3.43581 3.52432 4.01951 4.09702 4.20135 4.38475 4.47492 4.47681 4.51205 4.66532 4.74276 4.82724 4.84385 5.07075 5.14237 5.27325 5.33050 5.39733 5.43872 5.47377 5.61039 5.63604 5.71981 5.83588 6.04658 6.16906 6.29764 6.37680 6.44421 6.48132 6.54668 6.60506 6.74491 6.87646 6.93811 7.31759 7.46941 7.64363 7.77282 8.24051 8.37448 8.42979 9.18890 9.82062 10.39178 11.28190 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.030213 B = 0.001941 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.523965 B =14420.657925 C =14545.993842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.607 5.607 3 C 0.510 3.490 4 O -0.520 6.520 5 C 0.047 3.953 6 O -0.356 6.356 7 C 0.150 3.850 8 C 0.175 3.825 9 N -0.270 5.270 10 N -0.296 5.296 11 C 0.155 3.845 12 N -0.469 5.469 13 C 0.069 3.931 14 C 0.146 3.854 15 C -0.136 4.136 16 C 0.147 3.853 17 N -0.592 5.592 18 C -0.255 4.255 19 H 0.065 0.935 20 C 0.003 3.997 21 N -0.902 5.902 22 Si 0.903 3.097 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.284 1.284 26 C 0.174 3.826 27 C -0.146 4.146 28 H 0.056 0.944 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.222 0.778 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.061 0.939 41 H 0.051 0.949 42 H 0.020 0.980 43 H 0.057 0.943 44 H 0.255 0.745 45 H 0.021 0.979 46 H 0.091 0.909 47 H 0.052 0.948 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.360 24.526 -10.190 27.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.341 5.341 3 C 0.296 3.704 4 O -0.395 6.395 5 C -0.033 4.033 6 O -0.273 6.273 7 C 0.071 3.929 8 C -0.092 4.092 9 N -0.112 5.112 10 N -0.136 5.136 11 C -0.132 4.132 12 N -0.160 5.160 13 C -0.074 4.074 14 C 0.045 3.955 15 C -0.176 4.176 16 C 0.020 3.980 17 N -0.315 5.315 18 C -0.384 4.384 19 H 0.083 0.917 20 C -0.196 4.196 21 N -0.546 5.546 22 Si 0.733 3.267 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.211 1.211 26 C 0.047 3.953 27 C -0.186 4.186 28 H 0.074 0.926 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.238 0.762 36 H 0.103 0.897 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.038 0.962 43 H 0.076 0.924 44 H 0.065 0.935 45 H 0.039 0.961 46 H 0.109 0.891 47 H 0.070 0.930 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.131 24.678 -8.634 27.100 hybrid contribution -1.051 -0.995 -1.328 1.964 sum -8.182 23.683 -9.962 26.965 Atomic orbital electron populations 1.21811 0.80032 1.03422 1.01778 1.48105 1.06935 1.06051 1.73040 1.20072 0.88160 0.84685 0.77444 1.90747 1.13638 1.86847 1.48265 1.22341 0.91987 0.86259 1.02688 1.88102 1.31730 1.11994 1.95504 1.20492 0.89608 0.79937 1.02909 1.24266 1.01446 1.00368 0.83145 1.74282 1.06460 1.06711 1.23786 1.74308 1.14890 1.15381 1.09026 1.26520 0.96101 0.96909 0.93645 1.46181 1.30131 1.30681 1.08999 1.22190 1.03759 1.03978 0.77424 1.21224 0.97334 0.80532 0.96444 1.22358 1.01383 0.98014 0.95889 1.20870 0.95840 0.90907 0.90381 1.44079 1.77795 1.10203 0.99390 1.19122 1.26092 0.86568 1.06657 0.91696 1.25075 0.96884 0.97708 0.99967 1.70016 1.28093 1.38357 1.18093 0.86362 0.79704 0.83263 0.77366 1.20881 1.21632 1.21053 1.20758 0.95378 0.88625 0.90526 1.22573 1.01588 0.99005 0.95408 0.92553 0.89987 0.91667 0.89722 0.90128 0.89080 0.91076 0.76211 0.89714 0.88674 0.88557 0.88642 0.92060 0.93034 0.96227 0.92428 0.93478 0.96098 0.89104 0.92964 0.92332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.69 9.33 59.85 0.56 1.25 16 2 N -0.61 -8.42 2.76 -173.89 -0.48 -8.90 16 3 C 0.51 7.54 7.75 -10.99 -0.09 7.45 16 4 O -0.52 -10.37 15.83 -14.35 -0.23 -10.59 16 5 C 0.05 0.45 4.97 36.00 0.18 0.63 16 6 O -0.36 -4.28 9.86 -55.14 -0.54 -4.83 16 7 C 0.15 1.22 6.11 36.01 0.22 1.44 16 8 C 0.18 1.91 7.66 -154.99 -1.19 0.72 16 9 N -0.27 -3.86 12.21 32.80 0.40 -3.46 16 10 N -0.30 -3.93 12.21 29.69 0.36 -3.56 16 11 C 0.16 1.34 12.74 -89.95 -1.15 0.19 16 12 N -0.47 -3.75 3.15 -122.69 -0.39 -4.14 16 13 C 0.07 0.22 10.89 59.84 0.65 0.88 16 14 C 0.15 2.54 2.48 -67.89 -0.17 2.37 16 15 C -0.14 -2.31 5.34 -26.61 -0.14 -2.45 16 16 C 0.15 3.05 6.52 -3.71 -0.02 3.03 16 17 N -0.59 -14.59 2.99 -172.32 -0.52 -15.11 16 18 C -0.25 -6.86 9.58 -15.06 -0.14 -7.00 16 19 H 0.07 1.70 7.88 -52.49 -0.41 1.29 16 20 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 21 N -0.90 -26.07 11.19 55.49 0.62 -25.45 16 22 Si 0.90 21.38 29.59 -169.99 -5.03 16.35 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 C 0.17 4.12 5.30 -3.71 -0.02 4.10 16 27 C -0.15 -2.74 5.31 -26.61 -0.14 -2.88 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.86 6.45 -51.93 -0.34 0.52 16 30 H 0.06 0.42 6.44 -51.93 -0.33 0.09 16 31 H 0.08 0.62 7.40 -51.93 -0.38 0.23 16 32 H 0.08 0.50 8.11 -51.93 -0.42 0.08 16 33 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.31 7.86 -51.92 -0.41 -0.10 16 35 H 0.22 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 37 H 0.09 0.34 7.81 -51.93 -0.41 -0.07 16 38 H 0.10 0.14 8.14 -51.93 -0.42 -0.28 16 39 H 0.10 1.94 6.90 -51.93 -0.36 1.58 16 40 H 0.06 1.00 7.72 -51.93 -0.40 0.60 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 44 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.09 2.40 6.07 -51.93 -0.31 2.08 16 47 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.06 1.06 6.72 -51.93 -0.35 0.71 16 LS Contribution 388.82 15.07 5.86 5.86 Total: -1.00 -38.58 388.82 -8.95 -47.53 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -7.48 Total: -3.40 kcal Atomic # 6 Polarization: 11.25 SS G_CDS: -1.54 Total: 9.71 kcal Atomic # 7 Polarization: -60.62 SS G_CDS: 0.00 Total: -60.62 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.77 Total: -15.42 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -38.58 -8.95 -47.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566613214.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.886 kcal (2) G-P(sol) polarization free energy of solvation -38.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds