Wall clock time and date at job start Tue Mar 31 2020 21:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34778 * 119.99801 * 2 1 4 4 O 1.21284 * 119.99827 * 179.97438 * 3 2 1 5 5 C 1.50693 * 120.00204 * 0.02562 * 3 2 1 6 6 O 1.42907 * 109.47518 * 180.02562 * 5 3 2 7 7 C 1.42892 * 114.00217 * 180.02562 * 6 5 3 8 8 C 1.50703 * 109.47034 * 180.02562 * 7 6 5 9 9 N 1.30518 * 126.34394 * 269.95253 * 8 7 6 10 10 N 1.28594 * 109.67490 * 180.02562 * 9 8 7 11 11 C 1.30521 * 109.66850 * 359.72288 * 10 9 8 12 12 N 1.35490 * 126.34710 * 89.99609 * 8 7 6 13 13 C 1.46496 * 126.98325 * 359.96794 * 12 8 7 14 14 C 1.46496 * 120.00281 * 179.97438 * 2 1 3 15 15 C 1.53039 * 109.45825 * 60.06732 * 14 2 1 16 16 C 1.53197 * 109.31401 * 178.61678 * 15 14 2 17 17 N 1.46926 * 108.77398 * 54.63193 * 16 15 14 18 18 C 1.36936 * 120.62549 * 126.41567 * 17 16 15 19 19 H 1.07999 * 120.00542 * 331.82180 * 18 17 16 20 20 C 1.38820 * 119.99977 * 151.82225 * 18 17 16 21 21 N 1.31618 * 119.99848 * 343.08267 * 20 18 17 22 22 Si 1.86793 * 120.00114 * 163.07639 * 20 18 17 23 23 H 1.48504 * 109.46983 * 60.00233 * 22 20 18 24 24 H 1.48504 * 109.47048 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47550 * 300.00165 * 22 20 18 26 26 C 1.46919 * 118.74315 * 306.39321 * 17 16 15 27 27 C 1.53041 * 109.46011 * 300.00279 * 14 2 1 28 28 H 1.08992 * 109.47284 * 89.99929 * 1 2 3 29 29 H 1.09002 * 109.46620 * 210.00389 * 1 2 3 30 30 H 1.09007 * 109.46837 * 329.99699 * 1 2 3 31 31 H 1.08997 * 109.47239 * 60.00014 * 5 3 2 32 32 H 1.09000 * 109.47222 * 300.00220 * 5 3 2 33 33 H 1.08994 * 109.47682 * 59.99776 * 7 6 5 34 34 H 1.09013 * 109.47073 * 299.99701 * 7 6 5 35 35 H 1.08002 * 126.34481 * 180.30198 * 11 10 9 36 36 H 1.08996 * 109.47347 * 89.99798 * 13 12 8 37 37 H 1.08995 * 109.46833 * 329.99903 * 13 12 8 38 38 H 1.09003 * 109.47125 * 209.99917 * 13 12 8 39 39 H 1.09003 * 109.46596 * 180.02562 * 14 2 1 40 40 H 1.09002 * 109.49732 * 298.56494 * 15 14 2 41 41 H 1.09001 * 109.49560 * 58.66458 * 15 14 2 42 42 H 1.09005 * 109.58286 * 294.85106 * 16 15 14 43 43 H 1.08998 * 109.70385 * 174.49665 * 16 15 14 44 44 H 0.96992 * 120.00382 * 179.97438 * 21 20 18 45 45 H 1.09003 * 109.58898 * 293.82696 * 26 17 16 46 46 H 1.08994 * 109.70745 * 173.46365 * 26 17 16 47 47 H 1.09003 * 109.49544 * 301.33311 * 27 14 2 48 48 H 1.08994 * 109.50234 * 61.42787 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 0.0006 6 8 2.3140 3.5585 -0.0001 7 6 1.6994 4.8486 0.0009 8 6 2.7661 5.9131 -0.0006 9 7 3.3146 6.4601 1.0499 10 7 4.1858 7.3305 0.6798 11 6 4.2369 7.3741 -0.6237 12 7 3.3329 6.4804 -1.0927 13 6 3.0338 6.1832 -2.4957 14 6 2.1976 -1.2687 0.0006 15 6 1.8289 -2.0707 -1.2496 16 6 2.6226 -3.3810 -1.2632 17 7 2.3850 -4.0909 0.0011 18 6 1.9520 -5.3900 0.0010 19 1 1.3629 -5.7629 -0.8238 20 6 2.2704 -6.2278 1.0611 21 7 3.2414 -5.9028 1.8881 22 14 1.3207 -7.8163 1.3139 23 1 1.4730 -8.6802 0.1157 24 1 1.8504 -8.5253 2.5065 25 1 -0.1167 -7.5062 1.5210 26 6 2.6213 -3.3807 1.2653 27 6 1.8276 -2.0704 1.2506 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 0.7591 2.5298 0.8908 32 1 0.7584 2.5302 -0.8891 33 1 1.0802 4.9554 0.8915 34 1 1.0783 4.9559 -0.8885 35 1 4.8789 8.0072 -1.2182 36 1 2.2334 6.8365 -2.8429 37 1 2.7200 5.1435 -2.5878 38 1 3.9257 6.3485 -3.1002 39 1 3.2692 -1.0693 0.0009 40 1 0.7617 -2.2920 -1.2383 41 1 2.0711 -1.4894 -2.1393 42 1 3.6857 -3.1632 -1.3657 43 1 2.2945 -4.0008 -2.0976 44 1 3.4636 -6.4880 2.6290 45 1 3.6843 -3.1628 1.3689 46 1 2.2917 -3.9981 2.1009 47 1 2.0689 -1.4889 2.1404 48 1 0.7605 -2.2916 1.2383 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566613214.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:51 Heat of formation + Delta-G solvation = 13.700180 kcal Electronic energy + Delta-G solvation = -29224.774413 eV Core-core repulsion = 25123.896036 eV Total energy + Delta-G solvation = -4100.878377 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.14435 -41.25957 -39.36833 -38.45999 -36.56493 -36.01770 -34.34419 -32.76388 -32.04802 -31.46923 -29.42699 -28.50490 -27.90778 -27.35560 -26.44807 -23.90818 -23.66482 -23.41558 -22.05128 -20.98846 -20.20123 -18.78585 -18.58103 -18.10309 -17.64324 -17.46518 -17.29344 -16.83886 -16.54183 -16.29767 -15.92876 -15.58939 -15.41863 -15.39480 -14.85475 -14.48864 -14.34541 -14.27571 -14.12453 -13.86564 -13.66618 -13.28786 -13.19830 -13.13782 -13.00279 -12.91758 -12.58501 -12.57260 -12.53902 -12.08087 -12.01971 -11.90483 -11.48355 -11.44815 -11.34186 -11.14103 -10.84686 -10.79668 -10.56391 -10.43743 -9.60475 -8.72762 -7.87865 -5.34735 0.61646 1.48506 1.50213 1.51336 1.56680 1.57937 1.67332 1.90442 2.51798 2.82139 3.27886 3.35272 3.58707 3.64284 3.69739 3.85513 3.90351 3.97307 4.04676 4.11682 4.22517 4.25358 4.30774 4.38000 4.40107 4.45865 4.59074 4.64494 4.69317 4.69973 4.75948 4.83936 4.86129 5.00888 5.04158 5.05645 5.09204 5.13757 5.29117 5.43893 5.54888 5.63031 5.68090 5.85315 5.93579 6.37664 6.44534 7.12598 7.16929 7.64354 7.82825 8.36392 9.19227 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.030213 B = 0.001941 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.523965 B =14420.657925 C =14545.993842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.603 5.603 3 C 0.501 3.499 4 O -0.587 6.587 5 C 0.056 3.944 6 O -0.397 6.397 7 C 0.150 3.850 8 C 0.164 3.836 9 N -0.327 5.327 10 N -0.353 5.353 11 C 0.167 3.833 12 N -0.466 5.466 13 C 0.061 3.939 14 C 0.154 3.846 15 C -0.117 4.117 16 C 0.141 3.859 17 N -0.608 5.608 18 C -0.261 4.261 19 H 0.074 0.926 20 C -0.055 4.055 21 N -0.939 5.939 22 Si 0.972 3.028 23 H -0.275 1.275 24 H -0.298 1.298 25 H -0.273 1.273 26 C 0.180 3.820 27 C -0.127 4.127 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.104 0.896 31 H 0.115 0.885 32 H 0.129 0.871 33 H 0.101 0.899 34 H 0.117 0.883 35 H 0.265 0.735 36 H 0.112 0.888 37 H 0.095 0.905 38 H 0.115 0.885 39 H 0.057 0.943 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.002 0.998 43 H 0.066 0.934 44 H 0.250 0.750 45 H -0.016 1.016 46 H 0.060 0.940 47 H 0.053 0.947 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.904 26.037 -12.800 31.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.336 5.336 3 C 0.290 3.710 4 O -0.466 6.466 5 C -0.023 4.023 6 O -0.316 6.316 7 C 0.072 3.928 8 C -0.105 4.105 9 N -0.170 5.170 10 N -0.193 5.193 11 C -0.121 4.121 12 N -0.156 5.156 13 C -0.079 4.079 14 C 0.051 3.949 15 C -0.157 4.157 16 C 0.015 3.985 17 N -0.331 5.331 18 C -0.391 4.391 19 H 0.091 0.909 20 C -0.250 4.250 21 N -0.585 5.585 22 Si 0.799 3.201 23 H -0.200 1.200 24 H -0.225 1.225 25 H -0.199 1.199 26 C 0.054 3.946 27 C -0.167 4.167 28 H 0.100 0.900 29 H 0.091 0.909 30 H 0.122 0.878 31 H 0.133 0.867 32 H 0.147 0.853 33 H 0.119 0.881 34 H 0.135 0.865 35 H 0.280 0.720 36 H 0.131 0.869 37 H 0.113 0.887 38 H 0.134 0.866 39 H 0.075 0.925 40 H 0.097 0.903 41 H 0.091 0.909 42 H 0.020 0.980 43 H 0.084 0.916 44 H 0.059 0.941 45 H 0.002 0.998 46 H 0.079 0.921 47 H 0.072 0.928 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.746 26.214 -11.290 30.497 hybrid contribution 0.111 -1.427 -0.618 1.559 sum -10.635 24.787 -11.908 29.484 Atomic orbital electron populations 1.22190 0.76632 1.04984 1.03967 1.48045 1.08782 1.04438 1.72356 1.21124 0.87724 0.86453 0.75732 1.90723 1.16785 1.87835 1.51277 1.22436 0.90918 0.82646 1.06276 1.88037 1.33890 1.13644 1.95979 1.20791 0.88861 0.77623 1.05568 1.24803 1.01678 1.00622 0.83387 1.74139 1.08127 1.08390 1.26303 1.74162 1.16363 1.16935 1.11792 1.27328 0.95579 0.96387 0.92813 1.46475 1.29166 1.29723 1.10219 1.22574 1.05765 1.04667 0.74935 1.20757 0.95931 0.82436 0.95801 1.22122 1.01426 0.95736 0.96402 1.21034 0.95673 0.92791 0.88997 1.44335 1.77927 1.10154 1.00717 1.19521 1.25496 0.87480 1.06645 0.90877 1.25906 0.97846 1.01181 1.00045 1.70202 1.29980 1.39632 1.18722 0.85280 0.78572 0.79296 0.76919 1.20044 1.22486 1.19874 1.20506 0.93951 0.90519 0.89636 1.22283 1.01377 0.96470 0.96591 0.89972 0.90860 0.87799 0.86715 0.85343 0.88109 0.86540 0.71974 0.86942 0.88669 0.86648 0.92474 0.90324 0.90893 0.97975 0.91575 0.94137 0.99766 0.92150 0.92807 0.90701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.90 9.33 127.77 1.19 2.09 16 2 N -0.60 -15.25 2.76 -822.44 -2.27 -17.52 16 3 C 0.50 13.91 7.75 87.65 0.68 14.59 16 4 O -0.59 -23.90 15.83 15.99 0.25 -23.64 16 5 C 0.06 0.85 4.97 71.23 0.35 1.21 16 6 O -0.40 -8.66 9.86 -129.94 -1.28 -9.94 16 7 C 0.15 2.01 6.11 71.24 0.44 2.45 16 8 C 0.16 3.40 7.66 137.98 1.06 4.45 16 9 N -0.33 -9.58 12.21 -50.15 -0.61 -10.19 16 10 N -0.35 -9.57 12.21 -59.99 -0.73 -10.30 16 11 C 0.17 2.67 12.74 180.11 2.30 4.96 16 12 N -0.47 -6.51 3.15 -542.09 -1.71 -8.22 16 13 C 0.06 0.18 10.89 127.77 1.39 1.57 16 14 C 0.15 5.31 2.48 45.02 0.11 5.42 16 15 C -0.12 -3.76 5.34 30.67 0.16 -3.60 16 16 C 0.14 5.86 6.52 86.36 0.56 6.42 16 17 N -0.61 -30.56 2.99 -699.08 -2.09 -32.65 16 18 C -0.26 -14.16 9.58 84.04 0.81 -13.35 16 19 H 0.07 3.77 7.88 -2.91 -0.02 3.75 16 20 C -0.05 -3.05 4.92 84.86 0.42 -2.63 16 21 N -0.94 -56.50 11.19 21.65 0.24 -56.26 16 22 Si 0.97 44.35 29.59 68.60 2.03 46.38 16 23 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 24 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 25 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 26 C 0.18 8.98 5.30 86.37 0.46 9.43 16 27 C -0.13 -4.82 5.31 30.67 0.16 -4.66 16 28 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.07 1.22 6.45 -2.39 -0.02 1.20 16 30 H 0.10 0.71 6.44 -2.38 -0.02 0.69 16 31 H 0.12 1.08 7.40 -2.39 -0.02 1.06 16 32 H 0.13 0.75 8.11 -2.39 -0.02 0.73 16 33 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.12 0.44 7.86 -2.38 -0.02 0.42 16 35 H 0.26 1.22 8.06 -2.91 -0.02 1.20 16 36 H 0.11 -0.26 8.14 -2.39 -0.02 -0.27 16 37 H 0.09 0.34 7.81 -2.39 -0.02 0.32 16 38 H 0.12 -0.08 8.14 -2.39 -0.02 -0.10 16 39 H 0.06 2.43 6.90 -2.39 -0.02 2.41 16 40 H 0.08 2.30 7.72 -2.39 -0.02 2.28 16 41 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.00 0.10 8.14 -2.38 -0.02 0.08 16 43 H 0.07 2.59 7.93 -2.39 -0.02 2.57 16 44 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 45 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 46 H 0.06 3.35 6.07 -2.39 -0.01 3.34 16 47 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 48 H 0.07 2.60 6.72 -2.39 -0.02 2.59 16 Total: -1.00 -93.49 388.82 4.88 -88.62 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: 0.96 Total: 5.38 kcal Atomic # 6 Polarization: 18.28 SS G_CDS: 10.09 Total: 28.36 kcal Atomic # 7 Polarization: -127.98 SS G_CDS: -7.17 Total: -135.15 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -1.03 Total: -33.59 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -93.49 4.88 -88.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566613214.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.316 kcal (2) G-P(sol) polarization free energy of solvation -93.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds