Wall clock time and date at job start Tue Mar 31 2020 21:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36944 * 119.99412 * 2 1 4 4 H 1.08007 * 119.99635 * 201.84131 * 3 2 1 5 5 C 1.38810 * 119.99975 * 21.84127 * 3 2 1 6 6 N 1.31615 * 120.00032 * 11.16694 * 5 3 2 7 7 Si 1.86803 * 119.99553 * 191.16682 * 5 3 2 8 8 H 1.48497 * 109.47205 * 90.00235 * 7 5 3 9 9 H 1.48502 * 109.47000 * 209.99833 * 7 5 3 10 10 H 1.48495 * 109.47324 * 330.00079 * 7 5 3 11 11 C 1.46491 * 120.00467 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.47243 * 270.00030 * 11 2 1 13 13 H 1.09003 * 109.49465 * 305.06362 * 12 11 2 14 14 C 1.53039 * 109.49972 * 185.00105 * 12 11 2 15 15 C 1.53040 * 109.52937 * 178.69286 * 14 12 11 16 16 C 1.53158 * 109.32946 * 61.36732 * 15 14 12 17 17 N 1.46926 * 108.77180 * 305.35870 * 16 15 14 18 18 C 1.34778 * 120.63568 * 233.58819 * 17 16 15 19 19 O 1.21273 * 120.00308 * 180.02562 * 18 17 16 20 20 C 1.50706 * 119.99526 * 0.02562 * 18 17 16 21 21 N 1.46500 * 109.46816 * 180.02562 * 20 18 17 22 22 N 1.40177 * 126.34942 * 269.68720 * 21 20 18 23 23 C 1.29393 * 108.14071 * 179.87937 * 22 21 20 24 24 N 1.37362 * 108.82832 * 0.38519 * 23 22 21 25 25 C 1.46499 * 125.83131 * 179.77479 * 24 23 22 26 26 C 1.34814 * 108.33373 * 359.75223 * 24 23 22 27 27 O 1.21823 * 126.30236 * 180.02562 * 26 24 23 28 28 C 1.46932 * 118.73996 * 53.60512 * 17 16 15 29 29 H 1.08999 * 109.46916 * 275.13408 * 1 2 3 30 30 H 1.08997 * 109.47223 * 35.14150 * 1 2 3 31 31 H 1.09005 * 109.46564 * 155.13674 * 1 2 3 32 32 H 0.97003 * 119.99663 * 180.02562 * 6 5 3 33 33 H 1.09004 * 109.47419 * 149.99595 * 11 2 1 34 34 H 1.09005 * 109.47119 * 30.00035 * 11 2 1 35 35 H 1.09005 * 109.45967 * 298.70256 * 14 12 11 36 36 H 1.08999 * 109.46208 * 58.67449 * 14 12 11 37 37 H 1.08999 * 109.50079 * 181.30722 * 15 14 12 38 38 H 1.09000 * 109.49576 * 301.40374 * 15 14 12 39 39 H 1.09006 * 109.59404 * 185.57363 * 16 15 14 40 40 H 1.08999 * 109.70822 * 65.21537 * 16 15 14 41 41 H 1.08992 * 109.47110 * 299.99854 * 20 18 17 42 42 H 1.09005 * 109.46898 * 60.00162 * 20 18 17 43 43 H 1.07996 * 125.58867 * 180.13917 * 23 22 21 44 44 H 1.09000 * 109.47170 * 269.96894 * 25 24 23 45 45 H 1.08995 * 109.47446 * 29.97309 * 25 24 23 46 46 H 1.09001 * 109.47463 * 149.97560 * 25 24 23 47 47 H 1.08989 * 109.59236 * 186.60526 * 28 17 16 48 48 H 1.09007 * 109.57886 * 66.17856 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1715 1.2196 -0.3480 5 6 1.5302 2.3450 0.4472 6 7 0.3740 2.2740 1.0722 7 14 2.3376 4.0052 0.1621 8 1 1.8826 4.5601 -1.1380 9 1 1.9587 4.9344 1.2567 10 1 3.8133 3.8408 0.1408 11 6 2.1976 -1.2686 0.0006 12 6 2.4526 -1.7096 1.4432 13 1 2.9633 -0.9118 1.9826 14 6 3.3242 -2.9675 1.4464 15 6 3.6068 -3.3906 2.8897 16 6 2.2846 -3.7171 3.5904 17 7 1.3855 -2.5618 3.4655 18 6 0.8175 -2.0124 4.5573 19 8 0.0767 -1.0593 4.4409 20 6 1.1029 -2.5826 5.9228 21 7 0.3717 -1.8160 6.9347 22 7 0.8401 -0.6866 7.6204 23 6 -0.0906 -0.2906 8.4274 24 7 -1.1697 -1.1320 8.3066 25 6 -2.4260 -1.0279 9.0529 26 6 -0.8752 -2.0695 7.3837 27 8 -1.6014 -2.9781 7.0214 28 6 1.1170 -2.0169 2.1277 29 1 -0.3633 0.0920 1.0235 30 1 -0.3633 0.8403 -0.5915 31 1 -0.3632 -0.9325 -0.4321 32 1 -0.0590 3.0840 1.3844 33 1 3.1500 -1.1385 -0.5134 34 1 1.6085 -2.0285 -0.5130 35 1 2.8027 -3.7720 0.9277 36 1 4.2656 -2.7584 0.9383 37 1 4.2467 -4.2729 2.8916 38 1 4.1064 -2.5772 3.4160 39 1 2.4707 -3.9230 4.6446 40 1 1.8265 -4.5888 3.1232 41 1 0.7835 -3.6242 5.9557 42 1 2.1725 -2.5240 6.1247 43 1 -0.0277 0.5595 9.0905 44 1 -2.3503 -1.6053 9.9743 45 1 -2.6200 0.0172 9.2940 46 1 -3.2428 -1.4183 8.4457 47 1 0.5327 -1.1012 2.2165 48 1 0.5648 -2.7495 1.5389 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566738708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:39 Heat of formation + Delta-G solvation = 47.784003 kcal Electronic energy + Delta-G solvation = -30650.653131 eV Core-core repulsion = 26551.252740 eV Total energy + Delta-G solvation = -4099.400392 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.44315 -39.89012 -37.50833 -37.23861 -35.44133 -35.25925 -33.00103 -31.87236 -31.55618 -30.03737 -28.54195 -27.16742 -26.11168 -25.41475 -24.78444 -22.79856 -22.37183 -21.46542 -20.80064 -19.76763 -18.87413 -17.71171 -17.33450 -16.58416 -16.39172 -16.17806 -15.83129 -15.37811 -14.99860 -14.77685 -14.50064 -14.38609 -14.10832 -13.76354 -13.52846 -13.18982 -13.07431 -12.98788 -12.94591 -12.51503 -12.46190 -12.34853 -12.01185 -11.88505 -11.61900 -11.04328 -10.96712 -10.82401 -10.64894 -10.57860 -10.49091 -10.39985 -10.29711 -10.04717 -9.96140 -9.80791 -9.58755 -9.43651 -8.56643 -8.44102 -8.28033 -6.64223 -5.59452 -3.05758 1.61160 1.92973 2.64715 2.85408 2.99489 3.34331 3.44740 3.50151 3.52388 4.30595 4.53933 4.59049 4.63076 4.79809 4.84017 4.98219 4.99868 5.03962 5.16009 5.26564 5.28888 5.44111 5.50962 5.54100 5.63197 5.73364 5.79830 5.87340 5.99236 6.01394 6.19418 6.22667 6.26565 6.36774 6.43715 6.50224 6.69164 6.82400 6.88700 6.96019 7.15193 7.49647 7.55310 7.66994 7.86461 7.94756 8.00120 8.45870 8.51153 9.35174 9.98866 10.47371 11.44891 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010574 B = 0.003711 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2647.328909 B = 7543.713289 C = 9191.657084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.602 5.602 3 C -0.256 4.256 4 H 0.067 0.933 5 C 0.004 3.996 6 N -0.902 5.902 7 Si 0.902 3.098 8 H -0.289 1.289 9 H -0.292 1.292 10 H -0.281 1.281 11 C 0.160 3.840 12 C -0.121 4.121 13 H 0.075 0.925 14 C -0.114 4.114 15 C -0.133 4.133 16 C 0.106 3.894 17 N -0.608 5.608 18 C 0.492 3.508 19 O -0.510 6.510 20 C 0.145 3.855 21 N -0.436 5.436 22 N -0.269 5.269 23 C 0.253 3.747 24 N -0.562 5.562 25 C 0.101 3.899 26 C 0.653 3.347 27 O -0.555 6.555 28 C 0.122 3.878 29 H 0.034 0.966 30 H 0.042 0.958 31 H -0.006 1.006 32 H 0.251 0.749 33 H 0.046 0.954 34 H 0.036 0.964 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.231 0.769 44 H 0.071 0.929 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.112 0.888 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.747 -12.515 15.721 20.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.324 5.324 3 C -0.386 4.386 4 H 0.085 0.915 5 C -0.195 4.195 6 N -0.546 5.546 7 Si 0.732 3.268 8 H -0.216 1.216 9 H -0.218 1.218 10 H -0.206 1.206 11 C 0.031 3.969 12 C -0.143 4.143 13 H 0.094 0.906 14 C -0.153 4.153 15 C -0.172 4.172 16 C -0.017 4.017 17 N -0.343 5.343 18 C 0.277 3.723 19 O -0.383 6.383 20 C 0.020 3.980 21 N -0.255 5.255 22 N -0.090 5.090 23 C -0.046 4.046 24 N -0.291 5.291 25 C -0.041 4.041 26 C 0.352 3.648 27 O -0.429 6.429 28 C 0.001 3.999 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.012 0.988 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.247 0.753 44 H 0.090 0.910 45 H 0.107 0.893 46 H 0.105 0.895 47 H 0.130 0.870 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.640 -12.361 15.056 19.549 hybrid contribution -0.225 0.953 0.257 1.012 sum 1.416 -11.408 15.313 19.148 Atomic orbital electron populations 1.20875 0.82592 0.95175 0.99577 1.43952 1.01835 1.00647 1.85969 1.19160 0.97591 0.85367 1.36468 0.91521 1.25016 0.97627 0.98335 0.98525 1.70080 1.17253 1.26792 1.40511 0.86299 0.78762 0.84502 0.77216 1.21618 1.21847 1.20612 1.20820 0.95868 0.88195 0.91968 1.22279 0.94850 0.96237 1.00969 0.90638 1.21576 1.00173 0.98279 0.95243 1.21900 0.96248 1.01530 0.97475 1.21736 0.90740 0.88545 1.00715 1.48166 1.46772 1.31980 1.07420 1.20751 0.81389 0.84190 0.86011 1.90815 1.35604 1.26186 1.85721 1.21282 0.98067 0.94615 0.84037 1.48208 1.14128 1.26173 1.37034 1.77010 1.22576 1.01073 1.08325 1.25906 0.82921 0.97031 0.98726 1.45835 1.17041 1.27521 1.38722 1.21797 0.82813 1.03631 0.95896 1.16626 0.83033 0.83849 0.81258 1.91069 1.53633 1.33570 1.64607 1.21845 0.98012 1.00263 0.79749 0.94802 0.93918 0.98781 0.93833 0.93550 0.94539 0.92347 0.91927 0.91195 0.91488 0.90676 0.91244 0.86194 0.86043 0.75270 0.90991 0.89307 0.89450 0.86997 0.92855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.21 7.91 59.85 0.47 4.68 16 2 N -0.60 -15.47 2.77 -181.12 -0.50 -15.97 16 3 C -0.26 -7.24 9.68 -15.06 -0.15 -7.39 16 4 H 0.07 1.84 7.84 -52.48 -0.41 1.43 16 5 C 0.00 0.10 5.14 -17.43 -0.09 0.02 16 6 N -0.90 -27.71 10.54 55.49 0.58 -27.12 16 7 Si 0.90 22.74 29.57 -169.99 -5.03 17.71 16 8 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 9 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 11 C 0.16 3.27 5.18 -4.05 -0.02 3.25 16 12 C -0.12 -2.24 2.54 -90.50 -0.23 -2.47 16 13 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 14 C -0.11 -1.54 5.17 -26.69 -0.14 -1.68 16 15 C -0.13 -1.48 6.08 -26.63 -0.16 -1.65 16 16 C 0.11 1.18 6.34 -3.73 -0.02 1.16 16 17 N -0.61 -9.99 2.97 -172.78 -0.51 -10.51 16 18 C 0.49 9.07 7.77 -10.98 -0.09 8.98 16 19 O -0.51 -12.35 15.84 5.56 0.09 -12.26 16 20 C 0.15 2.01 5.22 -5.19 -0.03 1.98 16 21 N -0.44 -6.83 3.11 -66.31 -0.21 -7.04 16 22 N -0.27 -3.83 12.53 29.87 0.37 -3.45 16 23 C 0.25 2.58 12.66 -89.12 -1.13 1.45 16 24 N -0.56 -6.58 3.14 -130.11 -0.41 -6.99 16 25 C 0.10 0.71 11.05 59.85 0.66 1.38 16 26 C 0.65 10.60 8.60 -86.74 -0.75 9.85 16 27 O -0.56 -10.58 17.71 5.08 0.09 -10.49 16 28 C 0.12 2.37 5.10 -3.71 -0.02 2.35 16 29 H 0.03 0.97 5.98 -51.93 -0.31 0.66 16 30 H 0.04 1.19 7.21 -51.93 -0.37 0.81 16 31 H -0.01 -0.14 7.84 -51.93 -0.41 -0.55 16 32 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 33 H 0.05 0.92 8.03 -51.93 -0.42 0.51 16 34 H 0.04 0.68 7.86 -51.93 -0.41 0.28 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.62 5.93 -51.93 -0.31 0.31 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.12 1.37 7.91 -51.93 -0.41 0.96 16 42 H 0.12 1.30 7.69 -51.93 -0.40 0.90 16 43 H 0.23 0.99 8.06 -52.49 -0.42 0.56 16 44 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 46 H 0.09 0.74 8.08 -51.93 -0.42 0.32 16 47 H 0.11 2.79 4.83 -51.93 -0.25 2.54 16 48 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 386.79 15.07 5.83 5.83 Total: -1.00 -40.76 386.79 -8.85 -49.61 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -7.48 Total: -1.23 kcal Atomic # 6 Polarization: 23.60 SS G_CDS: -1.68 Total: 21.92 kcal Atomic # 7 Polarization: -70.42 SS G_CDS: -0.67 Total: -71.09 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: 0.18 Total: -22.75 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.03 Total: 17.71 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -40.76 -8.85 -49.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566738708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.390 kcal (2) G-P(sol) polarization free energy of solvation -40.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds