Wall clock time and date at job start Tue Mar 31 2020 21:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36944 * 119.99412 * 2 1 4 4 H 1.08007 * 119.99635 * 201.84131 * 3 2 1 5 5 C 1.38810 * 119.99975 * 21.84127 * 3 2 1 6 6 N 1.31615 * 120.00032 * 11.16694 * 5 3 2 7 7 Si 1.86803 * 119.99553 * 191.16682 * 5 3 2 8 8 H 1.48497 * 109.47205 * 90.00235 * 7 5 3 9 9 H 1.48502 * 109.47000 * 209.99833 * 7 5 3 10 10 H 1.48495 * 109.47324 * 330.00079 * 7 5 3 11 11 C 1.46491 * 120.00467 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.47243 * 270.00030 * 11 2 1 13 13 H 1.09003 * 109.49465 * 305.06362 * 12 11 2 14 14 C 1.53039 * 109.49972 * 185.00105 * 12 11 2 15 15 C 1.53040 * 109.52937 * 178.69286 * 14 12 11 16 16 C 1.53158 * 109.32946 * 61.36732 * 15 14 12 17 17 N 1.46926 * 108.77180 * 305.35870 * 16 15 14 18 18 C 1.34778 * 120.63568 * 233.58819 * 17 16 15 19 19 O 1.21273 * 120.00308 * 180.02562 * 18 17 16 20 20 C 1.50706 * 119.99526 * 0.02562 * 18 17 16 21 21 N 1.46500 * 109.46816 * 180.02562 * 20 18 17 22 22 N 1.40177 * 126.34942 * 269.68720 * 21 20 18 23 23 C 1.29393 * 108.14071 * 179.87937 * 22 21 20 24 24 N 1.37362 * 108.82832 * 0.38519 * 23 22 21 25 25 C 1.46499 * 125.83131 * 179.77479 * 24 23 22 26 26 C 1.34814 * 108.33373 * 359.75223 * 24 23 22 27 27 O 1.21823 * 126.30236 * 180.02562 * 26 24 23 28 28 C 1.46932 * 118.73996 * 53.60512 * 17 16 15 29 29 H 1.08999 * 109.46916 * 275.13408 * 1 2 3 30 30 H 1.08997 * 109.47223 * 35.14150 * 1 2 3 31 31 H 1.09005 * 109.46564 * 155.13674 * 1 2 3 32 32 H 0.97003 * 119.99663 * 180.02562 * 6 5 3 33 33 H 1.09004 * 109.47419 * 149.99595 * 11 2 1 34 34 H 1.09005 * 109.47119 * 30.00035 * 11 2 1 35 35 H 1.09005 * 109.45967 * 298.70256 * 14 12 11 36 36 H 1.08999 * 109.46208 * 58.67449 * 14 12 11 37 37 H 1.08999 * 109.50079 * 181.30722 * 15 14 12 38 38 H 1.09000 * 109.49576 * 301.40374 * 15 14 12 39 39 H 1.09006 * 109.59404 * 185.57363 * 16 15 14 40 40 H 1.08999 * 109.70822 * 65.21537 * 16 15 14 41 41 H 1.08992 * 109.47110 * 299.99854 * 20 18 17 42 42 H 1.09005 * 109.46898 * 60.00162 * 20 18 17 43 43 H 1.07996 * 125.58867 * 180.13917 * 23 22 21 44 44 H 1.09000 * 109.47170 * 269.96894 * 25 24 23 45 45 H 1.08995 * 109.47446 * 29.97309 * 25 24 23 46 46 H 1.09001 * 109.47463 * 149.97560 * 25 24 23 47 47 H 1.08989 * 109.59236 * 186.60526 * 28 17 16 48 48 H 1.09007 * 109.57886 * 66.17856 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1715 1.2196 -0.3480 5 6 1.5302 2.3450 0.4472 6 7 0.3740 2.2740 1.0722 7 14 2.3376 4.0052 0.1621 8 1 1.8826 4.5601 -1.1380 9 1 1.9587 4.9344 1.2567 10 1 3.8133 3.8408 0.1408 11 6 2.1976 -1.2686 0.0006 12 6 2.4526 -1.7096 1.4432 13 1 2.9633 -0.9118 1.9826 14 6 3.3242 -2.9675 1.4464 15 6 3.6068 -3.3906 2.8897 16 6 2.2846 -3.7171 3.5904 17 7 1.3855 -2.5618 3.4655 18 6 0.8175 -2.0124 4.5573 19 8 0.0767 -1.0593 4.4409 20 6 1.1029 -2.5826 5.9228 21 7 0.3717 -1.8160 6.9347 22 7 0.8401 -0.6866 7.6204 23 6 -0.0906 -0.2906 8.4274 24 7 -1.1697 -1.1320 8.3066 25 6 -2.4260 -1.0279 9.0529 26 6 -0.8752 -2.0695 7.3837 27 8 -1.6014 -2.9781 7.0214 28 6 1.1170 -2.0169 2.1277 29 1 -0.3633 0.0920 1.0235 30 1 -0.3633 0.8403 -0.5915 31 1 -0.3632 -0.9325 -0.4321 32 1 -0.0590 3.0840 1.3844 33 1 3.1500 -1.1385 -0.5134 34 1 1.6085 -2.0285 -0.5130 35 1 2.8027 -3.7720 0.9277 36 1 4.2656 -2.7584 0.9383 37 1 4.2467 -4.2729 2.8916 38 1 4.1064 -2.5772 3.4160 39 1 2.4707 -3.9230 4.6446 40 1 1.8265 -4.5888 3.1232 41 1 0.7835 -3.6242 5.9557 42 1 2.1725 -2.5240 6.1247 43 1 -0.0277 0.5595 9.0905 44 1 -2.3503 -1.6053 9.9743 45 1 -2.6200 0.0172 9.2940 46 1 -3.2428 -1.4183 8.4457 47 1 0.5327 -1.1012 2.2165 48 1 0.5648 -2.7495 1.5389 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566738708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:37 Heat of formation + Delta-G solvation = 19.087842 kcal Electronic energy + Delta-G solvation = -30651.897490 eV Core-core repulsion = 26551.252740 eV Total energy + Delta-G solvation = -4100.644751 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.45181 -41.23990 -38.97541 -38.44789 -37.23751 -36.26687 -34.57093 -33.17777 -32.90007 -31.69206 -29.67072 -28.31656 -27.85631 -27.10804 -26.05347 -24.02801 -23.66047 -22.58129 -22.31942 -21.26648 -20.11876 -18.79641 -18.74106 -18.44420 -17.52271 -17.19385 -17.03471 -16.84208 -16.56924 -16.24415 -15.84203 -15.62323 -15.43507 -15.19395 -14.83153 -14.72967 -14.37309 -14.23967 -13.96032 -13.81841 -13.60101 -13.51547 -13.36579 -13.28175 -12.94542 -12.82523 -12.71531 -12.56898 -12.36452 -12.10434 -12.05646 -11.82276 -11.69807 -11.53658 -11.49304 -11.45667 -11.24607 -10.73308 -10.61822 -9.68759 -9.63941 -8.77289 -7.81471 -5.29685 0.63054 1.05756 1.41105 1.43279 1.48685 1.51991 1.52187 1.98806 2.26600 2.49602 3.31580 3.38693 3.41380 3.67536 3.90604 3.98374 3.99843 4.04294 4.06812 4.13136 4.16853 4.36731 4.40273 4.50459 4.51749 4.65715 4.72456 4.75700 4.80281 4.84192 4.89855 4.92795 4.95741 4.99022 5.06029 5.18401 5.26455 5.33051 5.46418 5.53071 5.59059 5.64825 5.65294 5.75658 6.31898 6.37635 6.56439 6.87732 7.10608 7.14525 7.88737 8.31934 9.21566 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010574 B = 0.003711 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2647.328909 B = 7543.713289 C = 9191.657084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.184 3.816 2 N -0.617 5.617 3 C -0.259 4.259 4 H 0.074 0.926 5 C -0.058 4.058 6 N -0.939 5.939 7 Si 0.968 3.032 8 H -0.283 1.283 9 H -0.300 1.300 10 H -0.264 1.264 11 C 0.153 3.847 12 C -0.107 4.107 13 H 0.029 0.971 14 C -0.107 4.107 15 C -0.128 4.128 16 C 0.096 3.904 17 N -0.605 5.605 18 C 0.480 3.520 19 O -0.585 6.585 20 C 0.150 3.850 21 N -0.447 5.447 22 N -0.315 5.315 23 C 0.277 3.723 24 N -0.559 5.559 25 C 0.092 3.908 26 C 0.632 3.368 27 O -0.598 6.598 28 C 0.129 3.871 29 H -0.004 1.004 30 H 0.012 0.988 31 H 0.026 0.974 32 H 0.242 0.758 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.114 0.886 38 H 0.052 0.948 39 H 0.111 0.889 40 H 0.094 0.906 41 H 0.146 0.854 42 H 0.156 0.844 43 H 0.289 0.711 44 H 0.097 0.903 45 H 0.126 0.874 46 H 0.066 0.934 47 H 0.048 0.952 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.087 -14.381 16.934 22.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.340 5.340 3 C -0.389 4.389 4 H 0.092 0.908 5 C -0.253 4.253 6 N -0.587 5.587 7 Si 0.796 3.204 8 H -0.210 1.210 9 H -0.227 1.227 10 H -0.189 1.189 11 C 0.027 3.973 12 C -0.129 4.129 13 H 0.048 0.952 14 C -0.146 4.146 15 C -0.166 4.166 16 C -0.025 4.025 17 N -0.339 5.339 18 C 0.267 3.733 19 O -0.464 6.464 20 C 0.025 3.975 21 N -0.265 5.265 22 N -0.136 5.136 23 C -0.021 4.021 24 N -0.287 5.287 25 C -0.048 4.048 26 C 0.331 3.669 27 O -0.476 6.476 28 C 0.006 3.994 29 H 0.014 0.986 30 H 0.031 0.969 31 H 0.045 0.955 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.132 0.868 38 H 0.071 0.929 39 H 0.129 0.871 40 H 0.112 0.888 41 H 0.163 0.837 42 H 0.173 0.827 43 H 0.304 0.696 44 H 0.115 0.885 45 H 0.145 0.855 46 H 0.085 0.915 47 H 0.067 0.933 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.053 -14.281 16.278 22.031 hybrid contribution -0.963 1.492 -0.113 1.779 sum 3.090 -12.789 16.165 20.843 Atomic orbital electron populations 1.20496 0.83294 0.95352 0.96999 1.44182 1.01804 1.02023 1.86017 1.19555 0.97808 0.86535 1.35040 0.90816 1.25844 0.98399 1.02066 0.98974 1.70318 1.19065 1.26889 1.42380 0.85250 0.78576 0.79863 0.76709 1.20996 1.22744 1.18896 1.21080 0.96025 0.86545 0.93647 1.21992 0.94884 0.97617 0.98363 0.95214 1.21540 0.99509 0.95802 0.97706 1.21904 0.96581 1.02862 0.95208 1.22226 0.89781 0.86881 1.03589 1.48306 1.46904 1.32847 1.05800 1.21718 0.80214 0.83294 0.88037 1.90776 1.39020 1.29652 1.86954 1.21472 0.99922 0.95191 0.80885 1.48418 1.14205 1.26750 1.37143 1.76998 1.24555 1.01718 1.10350 1.27101 0.81056 0.96732 0.97229 1.46136 1.18538 1.26331 1.37683 1.22177 0.80358 1.06507 0.95742 1.17046 0.83164 0.84461 0.82245 1.91007 1.54738 1.35511 1.66295 1.21478 0.97840 0.98111 0.81950 0.98567 0.96889 0.95547 0.94870 0.92599 0.92154 0.90129 0.90902 0.86780 0.92872 0.87107 0.88821 0.83667 0.82700 0.69605 0.88499 0.85521 0.91482 0.93335 0.91541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 10.03 7.91 127.77 1.01 11.04 16 2 N -0.62 -32.72 2.77 -726.93 -2.01 -34.73 16 3 C -0.26 -15.02 9.68 84.03 0.81 -14.21 16 4 H 0.07 4.09 7.84 -2.91 -0.02 4.06 16 5 C -0.06 -3.51 5.14 84.86 0.44 -3.07 16 6 N -0.94 -61.22 10.54 21.65 0.23 -60.99 16 7 Si 0.97 48.12 29.57 68.60 2.03 50.15 16 8 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 9 H -0.30 -15.23 7.11 99.48 0.71 -14.53 16 10 H -0.26 -12.31 7.11 99.48 0.71 -11.60 16 11 C 0.15 6.22 5.18 86.38 0.45 6.67 16 12 C -0.11 -3.94 2.54 -10.72 -0.03 -3.96 16 13 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 14 C -0.11 -2.56 5.17 30.62 0.16 -2.41 16 15 C -0.13 -2.34 6.08 30.66 0.19 -2.15 16 16 C 0.10 1.82 6.34 86.35 0.55 2.36 16 17 N -0.61 -19.84 2.97 -818.95 -2.43 -22.28 16 18 C 0.48 18.34 7.77 87.66 0.68 19.02 16 19 O -0.58 -30.61 15.84 -3.01 -0.05 -30.65 16 20 C 0.15 4.06 5.22 85.63 0.45 4.50 16 21 N -0.45 -14.09 3.11 -481.78 -1.50 -15.59 16 22 N -0.32 -8.80 12.53 -59.42 -0.74 -9.54 16 23 C 0.28 5.12 12.66 179.82 2.28 7.40 16 24 N -0.56 -12.60 3.14 -683.70 -2.15 -14.75 16 25 C 0.09 1.16 11.05 127.77 1.41 2.58 16 26 C 0.63 20.90 8.60 178.99 1.54 22.44 16 27 O -0.60 -23.67 17.71 -4.74 -0.08 -23.75 16 28 C 0.13 5.14 5.10 86.36 0.44 5.58 16 29 H 0.00 -0.24 5.98 -2.39 -0.01 -0.26 16 30 H 0.01 0.74 7.21 -2.39 -0.02 0.72 16 31 H 0.03 1.22 7.84 -2.38 -0.02 1.21 16 32 H 0.24 15.51 8.31 -92.71 -0.77 14.74 16 33 H 0.06 2.15 8.03 -2.38 -0.02 2.13 16 34 H 0.06 2.16 7.86 -2.38 -0.02 2.14 16 35 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 36 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.11 1.35 5.93 -2.38 -0.01 1.33 16 40 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.15 3.09 7.91 -2.39 -0.02 3.07 16 42 H 0.16 3.01 7.69 -2.38 -0.02 2.99 16 43 H 0.29 1.30 8.06 -2.91 -0.02 1.27 16 44 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.07 1.15 8.08 -2.39 -0.02 1.13 16 47 H 0.05 2.61 4.83 -2.39 -0.01 2.60 16 48 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 Total: -1.00 -100.90 386.79 4.61 -96.29 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: 0.96 Total: 10.07 kcal Atomic # 6 Polarization: 45.41 SS G_CDS: 10.37 Total: 55.78 kcal Atomic # 7 Polarization: -149.27 SS G_CDS: -8.61 Total: -157.88 kcal Atomic # 8 Polarization: -54.27 SS G_CDS: -0.13 Total: -54.41 kcal Atomic # 14 Polarization: 48.12 SS G_CDS: 2.03 Total: 50.15 kcal Total: -100.90 4.61 -96.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566738708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.374 kcal (2) G-P(sol) polarization free energy of solvation -100.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds