Wall clock time and date at job start Tue Mar 31 2020 21:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37352 * 125.83191 * 2 1 4 4 N 1.29396 * 108.83161 * 179.97438 * 3 2 1 5 5 N 1.40165 * 108.14025 * 359.97438 * 4 3 2 6 6 C 1.46503 * 126.35126 * 180.02562 * 5 4 3 7 7 C 1.50706 * 109.47227 * 270.02842 * 6 5 4 8 8 O 1.21274 * 119.99890 * 0.02562 * 7 6 5 9 9 N 1.34769 * 119.99681 * 179.97438 * 7 6 5 10 10 C 1.46503 * 119.99947 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.47330 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47180 * 179.97438 * 11 10 9 13 13 C 1.52998 * 109.47222 * 176.23710 * 12 11 10 14 14 H 1.08993 * 109.87692 * 305.71671 * 13 12 11 15 15 C 1.54329 * 109.88545 * 184.53783 * 13 12 11 16 16 C 1.55149 * 102.94477 * 218.39589 * 15 13 12 17 17 C 1.54909 * 101.58271 * 35.49904 * 16 15 13 18 18 N 1.47020 * 109.88110 * 66.73327 * 13 12 11 19 19 C 1.36941 * 125.65079 * 298.32373 * 18 13 12 20 20 H 1.08004 * 119.99481 * 339.80162 * 19 18 13 21 21 C 1.38805 * 120.00611 * 159.79540 * 19 18 13 22 22 N 1.31609 * 120.00361 * 160.96438 * 21 19 18 23 23 Si 1.86805 * 119.99700 * 340.97162 * 21 19 18 24 24 H 1.48497 * 109.47560 * 84.77705 * 23 21 19 25 25 H 1.48506 * 109.46777 * 204.77540 * 23 21 19 26 26 H 1.48499 * 109.47176 * 324.77193 * 23 21 19 27 27 C 1.34817 * 125.83471 * 180.28994 * 2 1 3 28 28 O 1.21820 * 126.29873 * 0.03829 * 27 2 1 29 29 H 1.09000 * 109.47575 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.47031 * 120.02798 * 1 2 3 31 31 H 1.09006 * 109.46705 * 240.02234 * 1 2 3 32 32 H 1.08009 * 125.58485 * 359.96112 * 3 2 1 33 33 H 1.09003 * 109.47132 * 150.02725 * 6 5 4 34 34 H 1.09004 * 109.46904 * 30.03470 * 6 5 4 35 35 H 0.96998 * 120.00722 * 0.02562 * 9 7 6 36 36 H 1.08993 * 109.46770 * 60.00135 * 10 9 7 37 37 H 1.09001 * 109.46750 * 299.99945 * 10 9 7 38 38 H 1.08999 * 109.46467 * 299.99901 * 11 10 9 39 39 H 1.08997 * 109.47065 * 59.99854 * 11 10 9 40 40 H 1.09001 * 109.47422 * 296.24173 * 12 11 10 41 41 H 1.09008 * 109.46928 * 56.23964 * 12 11 10 42 42 H 1.09000 * 110.71881 * 336.75911 * 15 13 12 43 43 H 1.09001 * 110.71323 * 100.02454 * 15 13 12 44 44 H 1.09002 * 111.00114 * 277.42795 * 16 15 13 45 45 H 1.08998 * 111.03804 * 153.59071 * 16 15 13 46 46 H 1.09003 * 110.36756 * 204.15076 * 17 16 15 47 47 H 1.09005 * 110.36067 * 81.83485 * 17 16 15 48 48 H 0.97001 * 120.00421 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2691 1.1136 0.0000 4 7 3.5065 0.7352 0.0005 5 7 3.5344 -0.6661 0.0015 6 6 4.7314 -1.5109 0.0029 7 6 5.1432 -1.8009 -1.4175 8 8 4.5005 -1.3464 -2.3400 9 7 6.2263 -2.5646 -1.6624 10 6 6.6271 -2.8461 -3.0431 11 6 7.8771 -3.7284 -3.0416 12 6 8.2951 -4.0229 -4.4836 13 6 9.5973 -4.8262 -4.4831 14 1 10.3561 -4.3015 -3.9027 15 6 10.0883 -5.0309 -5.9318 16 6 10.6428 -6.4797 -5.9093 17 6 9.6578 -7.1747 -4.9365 18 7 9.3622 -6.1593 -3.9095 19 6 8.9393 -6.4154 -2.6325 20 1 9.0579 -5.6660 -1.8638 21 6 8.3581 -7.6381 -2.3258 22 7 8.2937 -8.0408 -1.0745 23 14 7.6675 -8.7121 -3.6894 24 1 8.7583 -9.5329 -4.2737 25 1 6.6195 -9.6053 -3.1331 26 1 7.0753 -7.8519 -4.7451 27 6 2.2543 -1.0930 -0.0055 28 8 1.8806 -2.2524 -0.0121 29 1 -0.3634 1.0276 -0.0005 30 1 -0.3633 -0.5142 -0.8897 31 1 -0.3633 -0.5135 0.8903 32 1 1.9249 2.1373 -0.0006 33 1 4.5146 -2.4474 0.5168 34 1 5.5409 -0.9931 0.5175 35 1 6.7406 -2.9278 -0.9246 36 1 6.8436 -1.9095 -3.5567 37 1 5.8178 -3.3641 -3.5578 38 1 8.6864 -3.2108 -2.5268 39 1 7.6600 -4.6650 -2.5281 40 1 7.5131 -4.5989 -4.9782 41 1 8.4474 -3.0843 -5.0166 42 1 9.2601 -4.9459 -6.6353 43 1 10.8774 -4.3195 -6.1756 44 1 11.6599 -6.5027 -5.5180 45 1 10.5974 -6.9315 -6.9003 46 1 10.1258 -8.0483 -4.4826 47 1 8.7459 -7.4612 -5.4605 48 1 7.8878 -8.8954 -0.8603 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567254426.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:05 Heat of formation + Delta-G solvation = 39.075046 kcal Electronic energy + Delta-G solvation = -29225.847753 eV Core-core repulsion = 25126.069713 eV Total energy + Delta-G solvation = -4099.778040 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 3.71 seconds Orbital eigenvalues (eV) -42.57015 -39.51976 -38.18158 -37.35505 -35.64315 -35.09509 -32.70314 -32.59212 -31.93443 -29.92234 -29.13573 -28.11547 -26.94130 -24.81618 -23.99453 -22.86932 -21.67325 -21.47615 -20.62471 -20.22815 -19.17547 -17.88885 -17.53744 -16.85094 -16.37324 -16.33666 -16.07822 -15.76264 -15.48171 -15.20389 -15.05316 -14.56327 -14.18341 -13.98137 -13.40175 -13.28920 -13.12899 -13.04410 -12.79429 -12.66106 -12.63510 -12.23215 -12.07018 -12.05504 -11.88421 -11.29093 -11.14636 -10.97795 -10.80873 -10.67620 -10.42041 -10.39921 -10.27401 -10.10826 -9.91773 -9.75784 -9.64216 -9.27527 -8.88818 -8.70287 -8.65188 -6.99937 -5.94418 -3.25239 1.48689 1.76885 2.53897 2.65145 2.87378 3.35847 3.38417 3.50376 3.51243 4.16720 4.46823 4.55313 4.69017 4.74985 4.91195 4.95967 4.99484 5.16121 5.18210 5.21430 5.27914 5.35610 5.54971 5.56659 5.60129 5.65088 5.84232 5.87661 5.98062 6.04672 6.13789 6.18444 6.27122 6.29815 6.32956 6.43504 6.46691 6.61262 6.70848 6.72522 6.82372 7.05383 7.15018 7.41688 7.60004 7.76243 7.90034 8.27434 8.30711 8.83418 9.69717 10.22248 11.21270 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016765 B = 0.002388 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.716526 B =11720.597170 C =12642.973991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.563 5.563 3 C 0.253 3.747 4 N -0.274 5.274 5 N -0.436 5.436 6 C 0.141 3.859 7 C 0.495 3.505 8 O -0.535 6.535 9 N -0.718 5.718 10 C 0.123 3.877 11 C -0.141 4.141 12 C -0.116 4.116 13 C 0.161 3.839 14 H 0.042 0.958 15 C -0.127 4.127 16 C -0.132 4.132 17 C 0.106 3.894 18 N -0.604 5.604 19 C -0.235 4.235 20 H 0.096 0.904 21 C 0.021 3.979 22 N -0.912 5.912 23 Si 0.885 3.115 24 H -0.288 1.288 25 H -0.305 1.305 26 H -0.275 1.275 27 C 0.651 3.349 28 O -0.548 6.548 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.231 0.769 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.406 0.594 36 H 0.057 0.943 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.114 0.886 40 H 0.058 0.942 41 H 0.047 0.953 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.067 0.933 45 H 0.061 0.939 46 H 0.056 0.944 47 H 0.026 0.974 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.754 19.247 1.293 21.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.292 5.292 3 C -0.047 4.047 4 N -0.094 5.094 5 N -0.256 5.256 6 C 0.016 3.984 7 C 0.278 3.722 8 O -0.412 6.412 9 N -0.370 5.370 10 C 0.000 4.000 11 C -0.178 4.178 12 C -0.156 4.156 13 C 0.054 3.946 14 H 0.060 0.940 15 C -0.165 4.165 16 C -0.170 4.170 17 C -0.019 4.019 18 N -0.330 5.330 19 C -0.362 4.362 20 H 0.114 0.886 21 C -0.178 4.178 22 N -0.556 5.556 23 Si 0.717 3.283 24 H -0.215 1.215 25 H -0.234 1.234 26 H -0.201 1.201 27 C 0.351 3.649 28 O -0.421 6.421 29 H 0.111 0.889 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.247 0.753 33 H 0.145 0.855 34 H 0.144 0.856 35 H 0.240 0.760 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.132 0.868 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.043 0.957 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.549 18.834 0.837 20.701 hybrid contribution -1.044 -1.051 -0.493 1.561 sum -9.593 17.783 0.344 20.208 Atomic orbital electron populations 1.21792 0.74164 1.04038 1.03991 1.45864 1.08836 1.06661 1.67839 1.25906 0.85830 0.94669 0.98256 1.76948 1.18282 0.91617 1.22601 1.48193 1.05494 1.03053 1.68860 1.21271 0.85732 0.95508 0.95882 1.20830 0.80934 0.78987 0.91408 1.90705 1.53228 1.51445 1.45816 1.45980 1.29060 1.51761 1.10245 1.21497 0.98035 0.99101 0.81381 1.22140 0.94814 1.01758 0.99132 1.21875 0.99430 0.98662 0.95588 1.21005 0.94230 0.87548 0.91812 0.93979 1.22605 0.99894 0.96769 0.97274 1.22712 0.99445 0.96000 0.98887 1.21992 0.95563 0.93717 0.90581 1.44868 1.78592 0.99404 1.10126 1.18588 1.33165 1.01550 0.82857 0.88643 1.25009 0.99658 0.97465 0.95650 1.69781 1.47364 1.21436 1.16979 0.86971 0.78842 0.80257 0.82262 1.21468 1.23358 1.20110 1.16659 0.81922 0.85083 0.81280 1.91114 1.77581 1.15242 1.58135 0.88884 0.90485 0.90460 0.75314 0.85482 0.85583 0.75972 0.92418 0.91939 0.92383 0.86807 0.92294 0.93440 0.91748 0.91793 0.91443 0.92008 0.92565 0.95693 0.92759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.58 11.08 59.85 0.66 1.24 16 2 N -0.56 -5.61 3.14 -130.10 -0.41 -6.02 16 3 C 0.25 1.97 12.61 -89.13 -1.12 0.85 16 4 N -0.27 -3.17 12.53 29.87 0.37 -2.80 16 5 N -0.44 -6.02 3.11 -66.30 -0.21 -6.23 16 6 C 0.14 1.73 6.87 -5.19 -0.04 1.69 16 7 C 0.49 7.72 7.90 -10.99 -0.09 7.63 16 8 O -0.54 -10.58 16.43 5.56 0.09 -10.48 16 9 N -0.72 -10.40 5.56 -60.29 -0.33 -10.73 16 10 C 0.12 1.97 5.67 -4.04 -0.02 1.95 16 11 C -0.14 -2.40 4.57 -26.73 -0.12 -2.52 16 12 C -0.12 -1.98 4.73 -26.74 -0.13 -2.11 16 13 C 0.16 2.98 3.25 -66.95 -0.22 2.76 16 14 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 15 C -0.13 -1.99 6.48 -24.90 -0.16 -2.15 16 16 C -0.13 -2.20 7.08 -24.59 -0.17 -2.37 16 17 C 0.11 2.28 4.69 -2.53 -0.01 2.27 16 18 N -0.60 -13.77 2.93 -162.57 -0.48 -14.24 16 19 C -0.23 -6.15 8.12 -15.06 -0.12 -6.27 16 20 H 0.10 2.58 6.90 -52.48 -0.36 2.22 16 21 C 0.02 0.58 5.46 -17.44 -0.10 0.48 16 22 N -0.91 -27.20 13.97 55.49 0.78 -26.43 16 23 Si 0.89 22.65 24.25 -169.99 -4.12 18.53 16 24 H -0.29 -7.15 6.54 56.52 0.37 -6.78 16 25 H -0.31 -8.04 7.11 56.52 0.40 -7.63 16 26 H -0.28 -6.98 6.44 56.52 0.36 -6.61 16 27 C 0.65 9.73 8.61 -86.73 -0.75 8.98 16 28 O -0.55 -10.21 17.77 5.08 0.09 -10.12 16 29 H 0.09 0.14 8.07 -51.93 -0.42 -0.28 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.23 0.40 8.06 -52.48 -0.42 -0.03 16 33 H 0.13 1.41 8.11 -51.93 -0.42 0.99 16 34 H 0.13 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.41 4.95 8.47 -40.82 -0.35 4.60 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.11 2.36 5.07 -51.93 -0.26 2.10 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 42 H 0.06 0.97 7.85 -51.93 -0.41 0.56 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.06 1.29 6.61 -51.93 -0.34 0.95 16 47 H 0.03 0.57 5.38 -51.93 -0.28 0.29 16 48 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 387.43 15.07 5.84 5.84 Total: -1.00 -39.04 387.43 -8.30 -47.34 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -7.54 Total: 2.91 kcal Atomic # 6 Polarization: 14.83 SS G_CDS: -2.38 Total: 12.44 kcal Atomic # 7 Polarization: -66.17 SS G_CDS: -0.28 Total: -66.45 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: 0.18 Total: -20.61 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -4.12 Total: 18.53 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -39.04 -8.30 -47.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567254426.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.418 kcal (2) G-P(sol) polarization free energy of solvation -39.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.71 seconds