Wall clock time and date at job start Tue Mar 31 2020 21:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37352 * 125.83191 * 2 1 4 4 N 1.29396 * 108.83161 * 179.97438 * 3 2 1 5 5 N 1.40165 * 108.14025 * 359.97438 * 4 3 2 6 6 C 1.46503 * 126.35126 * 180.02562 * 5 4 3 7 7 C 1.50706 * 109.47227 * 270.02842 * 6 5 4 8 8 O 1.21274 * 119.99890 * 0.02562 * 7 6 5 9 9 N 1.34769 * 119.99681 * 179.97438 * 7 6 5 10 10 C 1.46503 * 119.99947 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.47330 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47180 * 179.97438 * 11 10 9 13 13 C 1.52998 * 109.47222 * 176.23710 * 12 11 10 14 14 H 1.08993 * 109.87692 * 305.71671 * 13 12 11 15 15 C 1.54329 * 109.88545 * 184.53783 * 13 12 11 16 16 C 1.55149 * 102.94477 * 218.39589 * 15 13 12 17 17 C 1.54909 * 101.58271 * 35.49904 * 16 15 13 18 18 N 1.47020 * 109.88110 * 66.73327 * 13 12 11 19 19 C 1.36941 * 125.65079 * 298.32373 * 18 13 12 20 20 H 1.08004 * 119.99481 * 339.80162 * 19 18 13 21 21 C 1.38805 * 120.00611 * 159.79540 * 19 18 13 22 22 N 1.31609 * 120.00361 * 160.96438 * 21 19 18 23 23 Si 1.86805 * 119.99700 * 340.97162 * 21 19 18 24 24 H 1.48497 * 109.47560 * 84.77705 * 23 21 19 25 25 H 1.48506 * 109.46777 * 204.77540 * 23 21 19 26 26 H 1.48499 * 109.47176 * 324.77193 * 23 21 19 27 27 C 1.34817 * 125.83471 * 180.28994 * 2 1 3 28 28 O 1.21820 * 126.29873 * 0.03829 * 27 2 1 29 29 H 1.09000 * 109.47575 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.47031 * 120.02798 * 1 2 3 31 31 H 1.09006 * 109.46705 * 240.02234 * 1 2 3 32 32 H 1.08009 * 125.58485 * 359.96112 * 3 2 1 33 33 H 1.09003 * 109.47132 * 150.02725 * 6 5 4 34 34 H 1.09004 * 109.46904 * 30.03470 * 6 5 4 35 35 H 0.96998 * 120.00722 * 0.02562 * 9 7 6 36 36 H 1.08993 * 109.46770 * 60.00135 * 10 9 7 37 37 H 1.09001 * 109.46750 * 299.99945 * 10 9 7 38 38 H 1.08999 * 109.46467 * 299.99901 * 11 10 9 39 39 H 1.08997 * 109.47065 * 59.99854 * 11 10 9 40 40 H 1.09001 * 109.47422 * 296.24173 * 12 11 10 41 41 H 1.09008 * 109.46928 * 56.23964 * 12 11 10 42 42 H 1.09000 * 110.71881 * 336.75911 * 15 13 12 43 43 H 1.09001 * 110.71323 * 100.02454 * 15 13 12 44 44 H 1.09002 * 111.00114 * 277.42795 * 16 15 13 45 45 H 1.08998 * 111.03804 * 153.59071 * 16 15 13 46 46 H 1.09003 * 110.36756 * 204.15076 * 17 16 15 47 47 H 1.09005 * 110.36067 * 81.83485 * 17 16 15 48 48 H 0.97001 * 120.00421 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2691 1.1136 0.0000 4 7 3.5065 0.7352 0.0005 5 7 3.5344 -0.6661 0.0015 6 6 4.7314 -1.5109 0.0029 7 6 5.1432 -1.8009 -1.4175 8 8 4.5005 -1.3464 -2.3400 9 7 6.2263 -2.5646 -1.6624 10 6 6.6271 -2.8461 -3.0431 11 6 7.8771 -3.7284 -3.0416 12 6 8.2951 -4.0229 -4.4836 13 6 9.5973 -4.8262 -4.4831 14 1 10.3561 -4.3015 -3.9027 15 6 10.0883 -5.0309 -5.9318 16 6 10.6428 -6.4797 -5.9093 17 6 9.6578 -7.1747 -4.9365 18 7 9.3622 -6.1593 -3.9095 19 6 8.9393 -6.4154 -2.6325 20 1 9.0579 -5.6660 -1.8638 21 6 8.3581 -7.6381 -2.3258 22 7 8.2937 -8.0408 -1.0745 23 14 7.6675 -8.7121 -3.6894 24 1 8.7583 -9.5329 -4.2737 25 1 6.6195 -9.6053 -3.1331 26 1 7.0753 -7.8519 -4.7451 27 6 2.2543 -1.0930 -0.0055 28 8 1.8806 -2.2524 -0.0121 29 1 -0.3634 1.0276 -0.0005 30 1 -0.3633 -0.5142 -0.8897 31 1 -0.3633 -0.5135 0.8903 32 1 1.9249 2.1373 -0.0006 33 1 4.5146 -2.4474 0.5168 34 1 5.5409 -0.9931 0.5175 35 1 6.7406 -2.9278 -0.9246 36 1 6.8436 -1.9095 -3.5567 37 1 5.8178 -3.3641 -3.5578 38 1 8.6864 -3.2108 -2.5268 39 1 7.6600 -4.6650 -2.5281 40 1 7.5131 -4.5989 -4.9782 41 1 8.4474 -3.0843 -5.0166 42 1 9.2601 -4.9459 -6.6353 43 1 10.8774 -4.3195 -6.1756 44 1 11.6599 -6.5027 -5.5180 45 1 10.5974 -6.9315 -6.9003 46 1 10.1258 -8.0483 -4.4826 47 1 8.7459 -7.4612 -5.4605 48 1 7.8878 -8.8954 -0.8603 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567254426.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:04 Heat of formation + Delta-G solvation = 10.306998 kcal Electronic energy + Delta-G solvation = -29227.095230 eV Core-core repulsion = 25126.069713 eV Total energy + Delta-G solvation = -4101.025516 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.44183 -40.79044 -39.74043 -38.46686 -36.78883 -36.16201 -34.59244 -34.01252 -32.86594 -31.73264 -30.36852 -29.15035 -27.74693 -26.42417 -25.57660 -23.76303 -23.11948 -22.51332 -21.96692 -21.46655 -20.74887 -18.92661 -18.67156 -18.57606 -17.46849 -17.39858 -17.26063 -17.10135 -16.87400 -16.53299 -16.40264 -15.54296 -15.43572 -15.09411 -14.98726 -14.87901 -14.36735 -14.31128 -13.97536 -13.71228 -13.58986 -13.50831 -13.45906 -13.27916 -13.08922 -12.95812 -12.75431 -12.61211 -12.42592 -12.11084 -11.81956 -11.71600 -11.58415 -11.45761 -11.39306 -11.36383 -11.12575 -10.78979 -10.69104 -10.19095 -9.69429 -8.93160 -8.10520 -5.34517 0.62716 1.07144 1.27971 1.38101 1.42696 1.43353 1.51847 2.08202 2.33184 2.44439 3.14385 3.37301 3.43506 3.61695 3.85370 3.97070 4.06737 4.08097 4.11296 4.13294 4.16645 4.25117 4.39370 4.44617 4.45887 4.50406 4.66660 4.76189 4.76390 4.80969 4.84034 4.87782 4.95420 4.96363 5.02349 5.15011 5.19146 5.27056 5.36746 5.39295 5.62295 5.64425 5.66839 5.83290 6.19090 6.40752 6.58017 6.85826 6.88625 7.06970 7.63976 8.22919 9.08849 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016765 B = 0.002388 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.716526 B =11720.597170 C =12642.973991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.559 5.559 3 C 0.279 3.721 4 N -0.310 5.310 5 N -0.446 5.446 6 C 0.141 3.859 7 C 0.493 3.507 8 O -0.581 6.581 9 N -0.712 5.712 10 C 0.132 3.868 11 C -0.128 4.128 12 C -0.112 4.112 13 C 0.150 3.850 14 H 0.047 0.953 15 C -0.118 4.118 16 C -0.121 4.121 17 C 0.095 3.905 18 N -0.621 5.621 19 C -0.198 4.198 20 H 0.081 0.919 21 C -0.040 4.040 22 N -0.958 5.958 23 Si 0.932 3.068 24 H -0.279 1.279 25 H -0.321 1.321 26 H -0.274 1.274 27 C 0.628 3.372 28 O -0.603 6.603 29 H 0.147 0.853 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.294 0.706 33 H 0.132 0.868 34 H 0.163 0.837 35 H 0.417 0.583 36 H 0.069 0.931 37 H 0.038 0.962 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.039 0.961 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.099 0.901 44 H 0.075 0.925 45 H 0.090 0.910 46 H 0.034 0.966 47 H 0.015 0.985 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.205 22.671 -0.187 24.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.286 5.286 3 C -0.018 4.018 4 N -0.131 5.131 5 N -0.264 5.264 6 C 0.016 3.984 7 C 0.278 3.722 8 O -0.460 6.460 9 N -0.364 5.364 10 C 0.009 3.991 11 C -0.166 4.166 12 C -0.152 4.152 13 C 0.045 3.955 14 H 0.065 0.935 15 C -0.155 4.155 16 C -0.159 4.159 17 C -0.030 4.030 18 N -0.347 5.347 19 C -0.327 4.327 20 H 0.099 0.901 21 C -0.233 4.233 22 N -0.607 5.607 23 Si 0.764 3.236 24 H -0.205 1.205 25 H -0.250 1.250 26 H -0.200 1.200 27 C 0.327 3.673 28 O -0.480 6.480 29 H 0.165 0.835 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.309 0.691 33 H 0.150 0.850 34 H 0.181 0.819 35 H 0.253 0.747 36 H 0.087 0.913 37 H 0.056 0.944 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.058 0.942 41 H 0.101 0.899 42 H 0.092 0.908 43 H 0.117 0.883 44 H 0.094 0.906 45 H 0.108 0.892 46 H 0.052 0.948 47 H 0.033 0.967 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.972 22.317 -0.677 23.708 hybrid contribution -1.217 -1.933 -0.048 2.285 sum -9.189 20.384 -0.725 22.371 Atomic orbital electron populations 1.22173 0.71731 1.07369 1.03391 1.46129 1.10234 1.05895 1.66343 1.27214 0.84380 0.96106 0.94140 1.76967 1.20517 0.89975 1.25644 1.48368 1.05296 1.04318 1.68464 1.21413 0.86779 0.96521 0.93662 1.21441 0.80235 0.78027 0.92448 1.90669 1.54578 1.53334 1.47468 1.45941 1.29059 1.51325 1.10124 1.21296 0.96656 0.98997 0.82184 1.21917 0.95588 0.99943 0.99122 1.21828 0.98039 0.99781 0.95510 1.21298 0.94904 0.85412 0.93878 0.93522 1.22622 1.01180 0.96780 0.94951 1.22680 0.98288 0.96084 0.98821 1.22091 0.96385 0.93390 0.91146 1.45093 1.78086 1.02046 1.09470 1.18627 1.29740 1.00098 0.84264 0.90102 1.25478 1.01802 0.99245 0.96790 1.69882 1.50252 1.22015 1.18509 0.86202 0.78058 0.79005 0.80353 1.20523 1.25020 1.19996 1.17136 0.82981 0.85562 0.81658 1.91047 1.78615 1.17632 1.60705 0.83534 0.91759 0.90513 0.69130 0.85000 0.81915 0.74664 0.91274 0.94384 0.90966 0.90898 0.94245 0.89927 0.90787 0.88271 0.90605 0.89159 0.94818 0.96719 0.93472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.87 11.08 127.77 1.42 2.29 16 2 N -0.56 -10.30 3.14 -683.67 -2.15 -12.45 16 3 C 0.28 3.48 12.61 179.83 2.27 5.75 16 4 N -0.31 -6.66 12.53 -59.42 -0.74 -7.40 16 5 N -0.45 -12.25 3.11 -481.75 -1.50 -13.75 16 6 C 0.14 3.46 6.87 85.63 0.59 4.05 16 7 C 0.49 15.61 7.90 87.66 0.69 16.30 16 8 O -0.58 -23.44 16.43 -3.01 -0.05 -23.49 16 9 N -0.71 -20.79 5.56 -463.07 -2.57 -23.36 16 10 C 0.13 4.24 5.67 86.38 0.49 4.73 16 11 C -0.13 -4.29 4.57 30.59 0.14 -4.15 16 12 C -0.11 -3.62 4.73 30.59 0.14 -3.48 16 13 C 0.15 5.21 3.25 45.34 0.15 5.35 16 14 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 15 C -0.12 -3.17 6.48 31.78 0.21 -2.96 16 16 C -0.12 -3.58 7.08 31.98 0.23 -3.35 16 17 C 0.09 3.94 4.69 86.86 0.41 4.35 16 18 N -0.62 -27.90 2.93 -668.26 -1.96 -29.86 16 19 C -0.20 -10.59 8.12 84.03 0.68 -9.91 16 20 H 0.08 4.50 6.90 -2.91 -0.02 4.48 16 21 C -0.04 -2.29 5.46 84.86 0.46 -1.83 16 22 N -0.96 -59.64 13.97 21.65 0.30 -59.34 16 23 Si 0.93 48.26 24.25 68.60 1.66 49.92 16 24 H -0.28 -13.79 6.54 99.48 0.65 -13.14 16 25 H -0.32 -17.23 7.11 99.48 0.71 -16.53 16 26 H -0.27 -13.88 6.44 99.48 0.64 -13.24 16 27 C 0.63 19.09 8.61 178.99 1.54 20.63 16 28 O -0.60 -23.71 17.77 -4.73 -0.08 -23.80 16 29 H 0.15 -0.24 8.07 -2.39 -0.02 -0.26 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.29 -0.68 8.06 -2.91 -0.02 -0.71 16 33 H 0.13 3.05 8.11 -2.39 -0.02 3.03 16 34 H 0.16 2.64 8.14 -2.39 -0.02 2.62 16 35 H 0.42 10.24 8.47 -92.71 -0.79 9.45 16 36 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.07 2.20 8.14 -2.39 -0.02 2.19 16 39 H 0.07 3.10 5.07 -2.39 -0.01 3.08 16 40 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 42 H 0.07 1.89 7.85 -2.39 -0.02 1.87 16 43 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.08 2.14 8.14 -2.39 -0.02 2.13 16 45 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 46 H 0.03 1.54 6.61 -2.39 -0.02 1.52 16 47 H 0.02 0.66 5.38 -2.38 -0.01 0.65 16 48 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -91.94 387.43 2.39 -89.55 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 0.07 Total: 16.21 kcal Atomic # 6 Polarization: 28.35 SS G_CDS: 9.41 Total: 37.77 kcal Atomic # 7 Polarization: -137.54 SS G_CDS: -8.62 Total: -146.16 kcal Atomic # 8 Polarization: -47.15 SS G_CDS: -0.13 Total: -47.29 kcal Atomic # 14 Polarization: 48.26 SS G_CDS: 1.66 Total: 49.92 kcal Total: -91.94 2.39 -89.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567254426.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.857 kcal (2) G-P(sol) polarization free energy of solvation -91.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds