Wall clock time and date at job start Tue Mar 31 2020 21:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37349 * 125.83424 * 2 1 4 4 N 1.29401 * 108.83180 * 179.72872 * 3 2 1 5 5 N 1.40169 * 108.13827 * 0.37966 * 4 3 2 6 6 C 1.46500 * 126.35102 * 179.88208 * 5 4 3 7 7 C 1.50702 * 109.46602 * 269.68578 * 6 5 4 8 8 O 1.21281 * 120.00719 * 0.02562 * 7 6 5 9 9 N 1.34785 * 119.99690 * 179.97438 * 7 6 5 10 10 C 1.46498 * 119.99795 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.46816 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47026 * 179.97438 * 11 10 9 13 13 C 1.53009 * 109.47074 * 184.33042 * 12 11 10 14 14 H 1.09000 * 109.87600 * 303.85399 * 13 12 11 15 15 C 1.54325 * 109.87979 * 64.87406 * 13 12 11 16 16 C 1.55157 * 102.94127 * 141.76579 * 15 13 12 17 17 C 1.54918 * 101.61472 * 324.47426 * 16 15 13 18 18 N 1.47027 * 110.00664 * 182.75687 * 13 12 11 19 19 C 1.36933 * 125.64767 * 61.60799 * 18 13 12 20 20 H 1.07998 * 120.00160 * 12.02523 * 19 18 13 21 21 C 1.38817 * 119.99844 * 192.02377 * 19 18 13 22 22 N 1.31619 * 119.99676 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00030 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47348 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46862 * 120.00401 * 23 21 19 26 26 H 1.48499 * 109.47298 * 240.00107 * 23 21 19 27 27 C 1.34815 * 125.82998 * 179.97438 * 2 1 3 28 28 O 1.21813 * 126.30141 * 0.02674 * 27 2 1 29 29 H 1.08999 * 109.47497 * 270.03136 * 1 2 3 30 30 H 1.09000 * 109.46811 * 30.02962 * 1 2 3 31 31 H 1.09004 * 109.47165 * 150.02666 * 1 2 3 32 32 H 1.08008 * 125.58568 * 359.96886 * 3 2 1 33 33 H 1.09001 * 109.47387 * 149.69098 * 6 5 4 34 34 H 1.08989 * 109.47437 * 29.68407 * 6 5 4 35 35 H 0.96995 * 119.99945 * 0.02562 * 9 7 6 36 36 H 1.08996 * 109.47726 * 60.00275 * 10 9 7 37 37 H 1.09001 * 109.47107 * 299.99358 * 10 9 7 38 38 H 1.09001 * 109.47271 * 60.00136 * 11 10 9 39 39 H 1.09000 * 109.47261 * 299.99892 * 11 10 9 40 40 H 1.08999 * 109.47245 * 64.33605 * 12 11 10 41 41 H 1.09001 * 109.47571 * 304.33024 * 12 11 10 42 42 H 1.08999 * 110.71982 * 23.40116 * 15 13 12 43 43 H 1.08999 * 110.87045 * 260.19399 * 15 13 12 44 44 H 1.08998 * 111.00788 * 82.56926 * 16 15 13 45 45 H 1.08996 * 111.00495 * 206.38554 * 16 15 13 46 46 H 1.09000 * 110.36398 * 155.86894 * 17 16 15 47 47 H 1.08998 * 110.36891 * 278.18967 * 17 16 15 48 48 H 0.97003 * 119.99705 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2691 1.1135 0.0000 4 7 3.5066 0.7351 0.0058 5 7 3.5344 -0.6663 0.0010 6 6 4.7313 -1.5110 0.0024 7 6 5.1424 -1.8020 -1.4179 8 8 4.4993 -1.3481 -2.3406 9 7 6.2255 -2.5659 -1.6629 10 6 6.6255 -2.8483 -3.0437 11 6 7.8762 -3.7296 -3.0422 12 6 8.2935 -4.0251 -4.4842 13 6 9.4784 -4.9933 -4.4840 14 1 10.2949 -4.5795 -3.8922 15 6 9.0440 -6.3541 -3.9000 16 6 9.8070 -7.3726 -4.7876 17 6 9.7755 -6.6689 -6.1674 18 7 9.9314 -5.2341 -5.8618 19 6 10.4184 -4.2840 -6.7193 20 1 10.6775 -3.3034 -6.3481 21 6 10.5793 -4.5813 -8.0657 22 7 10.2631 -5.7762 -8.5180 23 14 11.2429 -3.2851 -9.2356 24 1 11.5193 -2.0347 -8.4838 25 1 12.4989 -3.7762 -9.8575 26 1 10.2388 -3.0143 -10.2956 27 6 2.2542 -1.0930 0.0005 28 8 1.8805 -2.2524 0.0005 29 1 -0.3634 0.0006 1.0276 30 1 -0.3633 0.8897 -0.5143 31 1 -0.3634 -0.8903 -0.5134 32 1 1.9250 2.1373 -0.0005 33 1 4.5147 -2.4472 0.5170 34 1 5.5410 -0.9930 0.5161 35 1 6.7401 -2.9287 -0.9251 36 1 6.8419 -1.9121 -3.5581 37 1 5.8160 -3.3667 -3.5577 38 1 7.6602 -4.6660 -2.5277 39 1 8.6855 -3.2110 -2.5283 40 1 8.5833 -3.0966 -4.9761 41 1 7.4573 -4.4745 -5.0197 42 1 7.9668 -6.4891 -3.9969 43 1 9.3506 -6.4452 -2.8580 44 1 10.8314 -7.5040 -4.4393 45 1 9.2835 -8.3279 -4.8243 46 1 10.6000 -7.0169 -6.7896 47 1 8.8221 -6.8497 -6.6638 48 1 10.3752 -5.9838 -9.4589 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567254427.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:14 Heat of formation + Delta-G solvation = 32.365686 kcal Electronic energy + Delta-G solvation = -28538.400127 eV Core-core repulsion = 24438.331147 eV Total energy + Delta-G solvation = -4100.068980 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.72598 -39.76057 -37.83459 -37.52628 -35.83244 -35.30915 -33.05216 -32.36448 -31.93630 -29.47079 -28.99286 -27.96991 -26.95447 -24.80228 -24.01430 -22.99947 -21.77040 -21.52269 -20.64887 -20.08937 -19.11505 -18.07831 -17.75446 -16.76651 -16.55548 -16.49456 -16.20738 -15.68201 -15.61238 -15.08975 -14.81246 -14.54244 -14.31840 -14.10203 -13.79841 -13.56837 -13.19411 -13.03203 -12.79794 -12.57094 -12.28425 -12.17817 -12.04637 -11.88835 -11.68816 -11.40434 -11.00295 -10.86355 -10.80315 -10.69746 -10.57775 -10.56281 -10.04380 -9.98985 -9.92822 -9.74265 -9.57500 -9.56612 -9.16529 -8.87028 -8.55145 -6.75018 -5.69447 -3.04357 1.32313 1.62926 2.36500 2.41820 2.71738 3.12148 3.41393 3.47367 3.49490 4.03592 4.35719 4.48273 4.52374 4.54719 4.73358 4.77684 4.98832 5.02448 5.06624 5.19606 5.38490 5.46325 5.47893 5.62727 5.63504 5.70372 5.76917 5.88425 5.97444 6.04735 6.12328 6.15603 6.28882 6.36902 6.38026 6.46013 6.60018 6.73020 6.75856 6.97984 7.20264 7.26221 7.30733 7.61036 7.66335 7.72547 7.85666 8.03057 8.33860 9.24878 9.86641 10.55186 11.42126 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018026 B = 0.001885 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.912001 B =14848.941560 C =15680.298222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.562 5.562 3 C 0.256 3.744 4 N -0.274 5.274 5 N -0.438 5.438 6 C 0.144 3.856 7 C 0.493 3.507 8 O -0.526 6.526 9 N -0.724 5.724 10 C 0.119 3.881 11 C -0.127 4.127 12 C -0.122 4.122 13 C 0.163 3.837 14 H 0.031 0.969 15 C -0.125 4.125 16 C -0.150 4.150 17 C 0.171 3.829 18 N -0.597 5.597 19 C -0.223 4.223 20 H 0.075 0.925 21 C -0.009 4.009 22 N -0.919 5.919 23 Si 0.909 3.091 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.652 3.348 28 O -0.552 6.552 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.232 0.768 33 H 0.125 0.875 34 H 0.126 0.874 35 H 0.401 0.599 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.055 0.945 44 H 0.056 0.944 45 H 0.055 0.945 46 H 0.074 0.926 47 H 0.021 0.979 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.677 11.083 22.883 29.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.291 5.291 3 C -0.043 4.043 4 N -0.094 5.094 5 N -0.258 5.258 6 C 0.018 3.982 7 C 0.276 3.724 8 O -0.402 6.402 9 N -0.377 5.377 10 C -0.004 4.004 11 C -0.166 4.166 12 C -0.162 4.162 13 C 0.055 3.945 14 H 0.048 0.952 15 C -0.163 4.163 16 C -0.189 4.189 17 C 0.046 3.954 18 N -0.321 5.321 19 C -0.352 4.352 20 H 0.093 0.907 21 C -0.205 4.205 22 N -0.567 5.567 23 Si 0.740 3.260 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C 0.352 3.648 28 O -0.425 6.425 29 H 0.092 0.908 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.248 0.752 33 H 0.143 0.857 34 H 0.144 0.856 35 H 0.235 0.765 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.093 0.907 47 H 0.039 0.961 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -15.331 10.842 21.954 28.889 hybrid contribution -0.246 0.396 -0.486 0.674 sum -15.577 11.238 21.468 28.807 Atomic orbital electron populations 1.21834 0.74036 1.04931 1.03466 1.45855 1.08920 1.06615 1.67690 1.25931 0.85742 0.94788 0.97844 1.76994 1.18301 0.91365 1.22771 1.48164 1.05434 1.03210 1.68992 1.21219 0.85898 0.95415 0.95678 1.20888 0.80972 0.78978 0.91520 1.90750 1.52973 1.50678 1.45757 1.46004 1.29285 1.52443 1.09977 1.21525 0.97437 1.00074 0.81319 1.21843 0.95716 0.99002 0.99995 1.22027 0.99830 1.01319 0.93055 1.20898 0.92982 0.92565 0.88019 0.95160 1.22590 0.99605 0.96187 0.97873 1.23016 0.99020 0.97353 0.99525 1.21478 1.00378 0.82778 0.90759 1.44586 1.73366 1.04562 1.09607 1.19027 1.34790 0.93301 0.88068 0.90696 1.24870 1.01731 0.97139 0.96749 1.69950 1.53619 1.19352 1.13733 0.86086 0.78060 0.80733 0.81153 1.20487 1.21829 1.21763 1.16647 0.81912 0.85109 0.81166 1.91093 1.77614 1.15270 1.58478 0.90810 0.89233 0.89361 0.75195 0.85719 0.85607 0.76492 0.91364 0.91432 0.91504 0.91701 0.91763 0.92189 0.92065 0.92633 0.92495 0.92592 0.90735 0.96086 0.93829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.43 11.05 59.85 0.66 1.09 16 2 N -0.56 -4.72 3.14 -130.10 -0.41 -5.13 16 3 C 0.26 1.66 12.66 -89.13 -1.13 0.54 16 4 N -0.27 -2.75 12.53 29.87 0.37 -2.38 16 5 N -0.44 -5.11 3.11 -66.31 -0.21 -5.31 16 6 C 0.14 1.32 6.87 -5.19 -0.04 1.29 16 7 C 0.49 6.28 7.90 -10.98 -0.09 6.19 16 8 O -0.53 -9.38 16.43 5.56 0.09 -9.29 16 9 N -0.72 -7.69 5.56 -60.29 -0.33 -8.02 16 10 C 0.12 1.58 5.67 -4.04 -0.02 1.56 16 11 C -0.13 -1.64 5.22 -26.73 -0.14 -1.78 16 12 C -0.12 -2.17 4.70 -26.73 -0.13 -2.30 16 13 C 0.16 3.25 3.19 -66.94 -0.21 3.04 16 14 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 15 C -0.12 -2.13 5.43 -24.90 -0.14 -2.27 16 16 C -0.15 -2.87 7.08 -24.58 -0.17 -3.04 16 17 C 0.17 4.19 5.46 -2.47 -0.01 4.17 16 18 N -0.60 -15.09 3.13 -162.48 -0.51 -15.60 16 19 C -0.22 -6.19 9.78 -15.06 -0.15 -6.33 16 20 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 21 C -0.01 -0.24 5.47 -17.43 -0.10 -0.34 16 22 N -0.92 -27.24 10.48 55.49 0.58 -26.66 16 23 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 27 C 0.65 8.36 8.60 -86.73 -0.75 7.62 16 28 O -0.55 -8.86 17.71 5.09 0.09 -8.77 16 29 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 31 H 0.09 0.51 8.08 -51.93 -0.42 0.09 16 32 H 0.23 0.16 8.06 -52.48 -0.42 -0.26 16 33 H 0.13 0.91 8.11 -51.93 -0.42 0.49 16 34 H 0.13 0.74 8.14 -51.94 -0.42 0.31 16 35 H 0.40 2.77 8.47 -40.82 -0.35 2.43 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.07 0.79 7.25 -51.93 -0.38 0.41 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 1.26 7.92 -51.93 -0.41 0.85 16 41 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 42 H 0.06 1.01 7.79 -51.93 -0.40 0.61 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 45 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.07 2.04 6.74 -51.93 -0.35 1.69 16 47 H 0.02 0.56 8.11 -51.93 -0.42 0.14 16 48 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 398.20 15.07 6.00 6.00 Total: -1.00 -40.08 398.20 -9.51 -49.60 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -7.77 Total: -1.20 kcal Atomic # 6 Polarization: 11.84 SS G_CDS: -2.40 Total: 9.44 kcal Atomic # 7 Polarization: -62.60 SS G_CDS: -0.50 Total: -63.10 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: 0.18 Total: -18.06 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -40.08 -9.51 -49.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567254427.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.961 kcal (2) G-P(sol) polarization free energy of solvation -40.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds