Wall clock time and date at job start Tue Mar 31 2020 21:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37349 * 125.83424 * 2 1 4 4 N 1.29401 * 108.83180 * 179.72872 * 3 2 1 5 5 N 1.40169 * 108.13827 * 0.37966 * 4 3 2 6 6 C 1.46500 * 126.35102 * 179.88208 * 5 4 3 7 7 C 1.50702 * 109.46602 * 269.68578 * 6 5 4 8 8 O 1.21281 * 120.00719 * 0.02562 * 7 6 5 9 9 N 1.34785 * 119.99690 * 179.97438 * 7 6 5 10 10 C 1.46498 * 119.99795 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.46816 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47026 * 179.97438 * 11 10 9 13 13 C 1.53009 * 109.47074 * 184.33042 * 12 11 10 14 14 H 1.09000 * 109.87600 * 303.85399 * 13 12 11 15 15 C 1.54325 * 109.87979 * 64.87406 * 13 12 11 16 16 C 1.55157 * 102.94127 * 141.76579 * 15 13 12 17 17 C 1.54918 * 101.61472 * 324.47426 * 16 15 13 18 18 N 1.47027 * 110.00664 * 182.75687 * 13 12 11 19 19 C 1.36933 * 125.64767 * 61.60799 * 18 13 12 20 20 H 1.07998 * 120.00160 * 12.02523 * 19 18 13 21 21 C 1.38817 * 119.99844 * 192.02377 * 19 18 13 22 22 N 1.31619 * 119.99676 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00030 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47348 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46862 * 120.00401 * 23 21 19 26 26 H 1.48499 * 109.47298 * 240.00107 * 23 21 19 27 27 C 1.34815 * 125.82998 * 179.97438 * 2 1 3 28 28 O 1.21813 * 126.30141 * 0.02674 * 27 2 1 29 29 H 1.08999 * 109.47497 * 270.03136 * 1 2 3 30 30 H 1.09000 * 109.46811 * 30.02962 * 1 2 3 31 31 H 1.09004 * 109.47165 * 150.02666 * 1 2 3 32 32 H 1.08008 * 125.58568 * 359.96886 * 3 2 1 33 33 H 1.09001 * 109.47387 * 149.69098 * 6 5 4 34 34 H 1.08989 * 109.47437 * 29.68407 * 6 5 4 35 35 H 0.96995 * 119.99945 * 0.02562 * 9 7 6 36 36 H 1.08996 * 109.47726 * 60.00275 * 10 9 7 37 37 H 1.09001 * 109.47107 * 299.99358 * 10 9 7 38 38 H 1.09001 * 109.47271 * 60.00136 * 11 10 9 39 39 H 1.09000 * 109.47261 * 299.99892 * 11 10 9 40 40 H 1.08999 * 109.47245 * 64.33605 * 12 11 10 41 41 H 1.09001 * 109.47571 * 304.33024 * 12 11 10 42 42 H 1.08999 * 110.71982 * 23.40116 * 15 13 12 43 43 H 1.08999 * 110.87045 * 260.19399 * 15 13 12 44 44 H 1.08998 * 111.00788 * 82.56926 * 16 15 13 45 45 H 1.08996 * 111.00495 * 206.38554 * 16 15 13 46 46 H 1.09000 * 110.36398 * 155.86894 * 17 16 15 47 47 H 1.08998 * 110.36891 * 278.18967 * 17 16 15 48 48 H 0.97003 * 119.99705 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2691 1.1135 0.0000 4 7 3.5066 0.7351 0.0058 5 7 3.5344 -0.6663 0.0010 6 6 4.7313 -1.5110 0.0024 7 6 5.1424 -1.8020 -1.4179 8 8 4.4993 -1.3481 -2.3406 9 7 6.2255 -2.5659 -1.6629 10 6 6.6255 -2.8483 -3.0437 11 6 7.8762 -3.7296 -3.0422 12 6 8.2935 -4.0251 -4.4842 13 6 9.4784 -4.9933 -4.4840 14 1 10.2949 -4.5795 -3.8922 15 6 9.0440 -6.3541 -3.9000 16 6 9.8070 -7.3726 -4.7876 17 6 9.7755 -6.6689 -6.1674 18 7 9.9314 -5.2341 -5.8618 19 6 10.4184 -4.2840 -6.7193 20 1 10.6775 -3.3034 -6.3481 21 6 10.5793 -4.5813 -8.0657 22 7 10.2631 -5.7762 -8.5180 23 14 11.2429 -3.2851 -9.2356 24 1 11.5193 -2.0347 -8.4838 25 1 12.4989 -3.7762 -9.8575 26 1 10.2388 -3.0143 -10.2956 27 6 2.2542 -1.0930 0.0005 28 8 1.8805 -2.2524 0.0005 29 1 -0.3634 0.0006 1.0276 30 1 -0.3633 0.8897 -0.5143 31 1 -0.3634 -0.8903 -0.5134 32 1 1.9250 2.1373 -0.0005 33 1 4.5147 -2.4472 0.5170 34 1 5.5410 -0.9930 0.5161 35 1 6.7401 -2.9287 -0.9251 36 1 6.8419 -1.9121 -3.5581 37 1 5.8160 -3.3667 -3.5577 38 1 7.6602 -4.6660 -2.5277 39 1 8.6855 -3.2110 -2.5283 40 1 8.5833 -3.0966 -4.9761 41 1 7.4573 -4.4745 -5.0197 42 1 7.9668 -6.4891 -3.9969 43 1 9.3506 -6.4452 -2.8580 44 1 10.8314 -7.5040 -4.4393 45 1 9.2835 -8.3279 -4.8243 46 1 10.6000 -7.0169 -6.7896 47 1 8.8221 -6.8497 -6.6638 48 1 10.3752 -5.9838 -9.4589 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567254427.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:12 Heat of formation + Delta-G solvation = 3.958687 kcal Electronic energy + Delta-G solvation = -28539.631947 eV Core-core repulsion = 24438.331147 eV Total energy + Delta-G solvation = -4101.300800 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.42788 -40.78353 -39.47630 -38.44198 -36.85058 -36.16796 -34.72555 -33.77573 -32.82757 -31.26802 -30.11657 -28.96627 -27.68375 -26.61315 -25.50206 -23.74002 -22.78326 -22.49458 -21.87303 -21.62380 -20.70776 -18.88778 -18.64216 -18.57432 -17.39154 -17.25797 -17.13553 -16.96046 -16.58203 -16.55958 -16.07303 -15.70328 -15.63361 -15.36745 -14.98592 -14.41240 -14.30009 -13.99580 -13.70769 -13.60543 -13.58940 -13.49720 -13.35482 -13.09393 -13.01554 -12.92980 -12.77147 -12.64947 -12.24137 -11.96596 -11.88412 -11.72517 -11.61179 -11.50681 -11.44395 -11.31784 -11.14294 -10.79476 -10.67145 -10.20466 -9.67277 -8.79820 -7.84553 -5.20256 0.65700 1.06983 1.43207 1.44372 1.45793 1.53268 1.54237 2.06948 2.32901 2.49371 3.32932 3.45344 3.61972 3.71842 3.93203 3.99527 4.06057 4.10421 4.14135 4.17143 4.24853 4.34385 4.40219 4.42426 4.51686 4.61147 4.74754 4.78204 4.82009 4.83660 4.87714 4.98142 5.00317 5.03298 5.13527 5.23527 5.30122 5.36594 5.50954 5.51136 5.65767 5.68575 5.70395 5.80310 6.27621 6.44696 6.58649 6.90261 7.12526 7.13923 7.82569 8.49137 9.26272 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018026 B = 0.001885 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.912001 B =14848.941560 C =15680.298222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.560 5.560 3 C 0.278 3.722 4 N -0.311 5.311 5 N -0.447 5.447 6 C 0.143 3.857 7 C 0.489 3.511 8 O -0.585 6.585 9 N -0.706 5.706 10 C 0.127 3.873 11 C -0.107 4.107 12 C -0.113 4.113 13 C 0.152 3.848 14 H 0.039 0.961 15 C -0.112 4.112 16 C -0.138 4.138 17 C 0.172 3.828 18 N -0.620 5.620 19 C -0.227 4.227 20 H 0.078 0.922 21 C -0.071 4.071 22 N -0.951 5.951 23 Si 0.972 3.028 24 H -0.265 1.265 25 H -0.291 1.291 26 H -0.296 1.296 27 C 0.630 3.370 28 O -0.600 6.600 29 H 0.092 0.908 30 H 0.129 0.871 31 H 0.066 0.934 32 H 0.289 0.711 33 H 0.143 0.857 34 H 0.163 0.837 35 H 0.423 0.577 36 H 0.049 0.951 37 H 0.045 0.955 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.037 0.963 41 H 0.036 0.964 42 H 0.068 0.932 43 H 0.099 0.901 44 H 0.065 0.935 45 H 0.079 0.921 46 H 0.036 0.964 47 H -0.013 1.013 48 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.939 12.735 26.237 33.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.287 5.287 3 C -0.020 4.020 4 N -0.132 5.132 5 N -0.266 5.266 6 C 0.018 3.982 7 C 0.275 3.725 8 O -0.465 6.465 9 N -0.360 5.360 10 C 0.002 3.998 11 C -0.145 4.145 12 C -0.153 4.153 13 C 0.046 3.954 14 H 0.057 0.943 15 C -0.150 4.150 16 C -0.176 4.176 17 C 0.047 3.953 18 N -0.344 5.344 19 C -0.356 4.356 20 H 0.096 0.904 21 C -0.264 4.264 22 N -0.601 5.601 23 Si 0.801 3.199 24 H -0.190 1.190 25 H -0.219 1.219 26 H -0.223 1.223 27 C 0.329 3.671 28 O -0.477 6.477 29 H 0.111 0.889 30 H 0.147 0.853 31 H 0.085 0.915 32 H 0.304 0.696 33 H 0.161 0.839 34 H 0.181 0.819 35 H 0.261 0.739 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.110 0.890 39 H 0.105 0.895 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.087 0.913 43 H 0.118 0.882 44 H 0.084 0.916 45 H 0.097 0.903 46 H 0.054 0.946 47 H 0.005 0.995 48 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -15.576 12.527 25.393 32.316 hybrid contribution -0.215 -0.050 -1.502 1.518 sum -15.791 12.477 23.890 31.238 Atomic orbital electron populations 1.22170 0.71834 1.05812 1.05053 1.46134 1.10249 1.06009 1.66348 1.27113 0.84489 0.96147 0.94260 1.76998 1.20353 0.90306 1.25548 1.48408 1.05503 1.04192 1.68479 1.21471 0.86614 0.96791 0.93291 1.21595 0.80417 0.77990 0.92525 1.90720 1.54881 1.53077 1.47786 1.45768 1.28942 1.51679 1.09568 1.21235 0.96966 0.98985 0.82573 1.21639 0.95881 1.00292 0.96694 1.21829 0.98181 0.99271 0.96052 1.21204 0.93714 0.95019 0.85439 0.94317 1.22591 0.99795 0.93039 0.99527 1.22885 1.00386 0.98338 0.95991 1.21275 0.96988 0.83549 0.93504 1.44908 1.73621 1.04556 1.11348 1.19368 1.33681 0.93837 0.88759 0.90409 1.25674 1.03118 0.99065 0.98495 1.70170 1.55432 1.21087 1.13408 0.85093 0.76988 0.78924 0.78900 1.18960 1.21854 1.22345 1.17084 0.82925 0.85520 0.81577 1.91030 1.78547 1.17310 1.60820 0.88916 0.85308 0.91499 0.69629 0.83897 0.81919 0.73868 0.93299 0.93623 0.89030 0.89466 0.94399 0.94464 0.91348 0.88248 0.91646 0.90250 0.94603 0.99507 0.94589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.61 11.05 127.77 1.41 2.02 16 2 N -0.56 -8.54 3.14 -683.67 -2.15 -10.69 16 3 C 0.28 2.83 12.66 179.83 2.28 5.11 16 4 N -0.31 -5.72 12.53 -59.42 -0.74 -6.46 16 5 N -0.45 -10.04 3.11 -481.79 -1.50 -11.54 16 6 C 0.14 2.42 6.87 85.63 0.59 3.01 16 7 C 0.49 12.14 7.90 87.66 0.69 12.83 16 8 O -0.59 -21.36 16.43 -3.03 -0.05 -21.41 16 9 N -0.71 -13.75 5.56 -463.05 -2.57 -16.32 16 10 C 0.13 3.27 5.67 86.38 0.49 3.76 16 11 C -0.11 -2.49 5.22 30.59 0.16 -2.33 16 12 C -0.11 -3.98 4.70 30.60 0.14 -3.83 16 13 C 0.15 5.87 3.19 45.34 0.14 6.01 16 14 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 15 C -0.11 -3.46 5.43 31.78 0.17 -3.29 16 16 C -0.14 -4.99 7.08 31.99 0.23 -4.76 16 17 C 0.17 8.67 5.46 86.84 0.47 9.15 16 18 N -0.62 -31.82 3.13 -667.96 -2.09 -33.91 16 19 C -0.23 -12.85 9.78 84.04 0.82 -12.03 16 20 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 21 C -0.07 -4.14 5.47 84.86 0.46 -3.68 16 22 N -0.95 -58.94 10.48 21.65 0.23 -58.71 16 23 Si 0.97 47.19 29.55 68.60 2.03 49.22 16 24 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 25 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 26 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 27 C 0.63 16.08 8.60 178.99 1.54 17.62 16 28 O -0.60 -19.89 17.71 -4.71 -0.08 -19.97 16 29 H 0.09 0.28 8.14 -2.39 -0.02 0.27 16 30 H 0.13 -0.17 8.14 -2.39 -0.02 -0.19 16 31 H 0.07 0.77 8.08 -2.38 -0.02 0.75 16 32 H 0.29 -1.00 8.06 -2.91 -0.02 -1.02 16 33 H 0.14 1.85 8.11 -2.39 -0.02 1.83 16 34 H 0.16 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.42 4.42 8.47 -92.71 -0.79 3.64 16 36 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.09 1.76 7.25 -2.39 -0.02 1.74 16 39 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.04 1.50 7.92 -2.39 -0.02 1.48 16 41 H 0.04 1.45 8.08 -2.39 -0.02 1.44 16 42 H 0.07 2.05 7.79 -2.39 -0.02 2.03 16 43 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 45 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 46 H 0.04 2.05 6.74 -2.39 -0.02 2.03 16 47 H -0.01 -0.73 8.11 -2.39 -0.02 -0.75 16 48 H 0.24 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -95.73 398.20 2.84 -92.88 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: 0.18 Total: 7.31 kcal Atomic # 6 Polarization: 19.99 SS G_CDS: 9.61 Total: 29.59 kcal Atomic # 7 Polarization: -128.80 SS G_CDS: -8.83 Total: -137.63 kcal Atomic # 8 Polarization: -41.24 SS G_CDS: -0.13 Total: -41.38 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Total: -95.73 2.84 -92.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567254427.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.843 kcal (2) G-P(sol) polarization free energy of solvation -95.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds