Wall clock time and date at job start Tue Mar 31 2020 20:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46900 * 109.47065 * 2 1 4 4 C 1.46891 * 111.00165 * 59.18049 * 3 2 1 5 5 C 1.53003 * 109.47155 * 66.04531 * 4 3 2 6 6 N 1.46500 * 109.47593 * 179.97438 * 5 4 3 7 7 C 1.34766 * 120.00129 * 180.02562 * 6 5 4 8 8 O 1.21678 * 120.00148 * 359.97438 * 7 6 5 9 9 C 1.46771 * 120.00146 * 180.02562 * 7 6 5 10 10 N 1.38145 * 126.84138 * 0.02562 * 9 7 6 11 11 H 0.97004 * 126.47844 * 359.94309 * 10 9 7 12 12 C 1.34498 * 107.05782 * 179.97438 * 10 9 7 13 13 C 1.50689 * 125.42347 * 179.97438 * 12 10 9 14 14 N 1.30862 * 109.15798 * 0.23867 * 12 10 9 15 15 C 1.33320 * 109.68743 * 359.60366 * 14 12 10 16 16 C 1.50695 * 126.10953 * 180.13643 * 15 14 12 17 17 C 1.46902 * 110.99695 * 295.22901 * 3 2 1 18 18 C 1.50699 * 109.47246 * 288.23724 * 17 3 2 19 19 O 1.21295 * 119.99920 * 354.30294 * 18 17 3 20 20 N 1.34778 * 120.00181 * 174.30302 * 18 17 3 21 21 C 1.37092 * 120.00051 * 180.02562 * 20 18 17 22 22 H 1.08001 * 120.00560 * 0.02562 * 21 20 18 23 23 C 1.38957 * 120.00152 * 179.97438 * 21 20 18 24 24 N 1.31403 * 120.00067 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 119.99763 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.47139 * 89.99543 * 25 23 21 27 27 H 1.48501 * 109.47136 * 209.99878 * 25 23 21 28 28 H 1.48498 * 109.47251 * 329.99741 * 25 23 21 29 29 H 1.09005 * 109.47137 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47488 * 299.98812 * 1 2 3 31 31 H 1.08997 * 109.47144 * 59.99103 * 1 2 3 32 32 H 1.09003 * 109.46932 * 239.99674 * 2 1 3 33 33 H 1.09000 * 109.47368 * 120.00168 * 2 1 3 34 34 H 1.09004 * 109.47297 * 306.04697 * 4 3 2 35 35 H 1.09002 * 109.47312 * 186.04797 * 4 3 2 36 36 H 1.09004 * 109.46883 * 59.99912 * 5 4 3 37 37 H 1.09002 * 109.47229 * 300.00318 * 5 4 3 38 38 H 0.97003 * 119.99234 * 0.02562 * 6 5 4 39 39 H 1.09000 * 109.47767 * 89.99795 * 13 12 10 40 40 H 1.09005 * 109.46939 * 329.99318 * 13 12 10 41 41 H 1.08997 * 109.47300 * 209.99999 * 13 12 10 42 42 H 1.09000 * 109.47197 * 270.30511 * 16 15 14 43 43 H 1.09002 * 109.47387 * 30.30618 * 16 15 14 44 44 H 1.08998 * 109.47073 * 150.30261 * 16 15 14 45 45 H 1.09002 * 109.47259 * 48.23951 * 17 3 2 46 46 H 1.09003 * 109.47282 * 168.23710 * 17 3 2 47 47 H 0.97000 * 119.99895 * 359.97438 * 20 18 17 48 48 H 0.97007 * 120.00062 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5327 2.1155 1.1777 5 6 2.1474 1.5121 2.4422 6 7 1.6623 2.2411 3.6168 7 6 2.0736 1.8831 4.8493 8 8 2.8474 0.9542 4.9865 9 6 1.5871 2.6130 6.0260 10 7 0.7111 3.6811 6.0345 11 1 0.2984 4.0947 5.2602 12 6 0.5389 4.0400 7.3193 13 6 -0.3388 5.1659 7.8015 14 7 1.2593 3.2592 8.0835 15 6 1.9100 2.3711 7.3317 16 6 2.8405 1.2964 7.8319 17 6 1.6440 2.0761 -1.2407 18 6 2.4640 1.5368 -2.3842 19 8 3.3516 0.7382 -2.1704 20 7 2.2112 1.9419 -3.6446 21 6 2.9569 1.4508 -4.6850 22 1 3.7466 0.7392 -4.4947 23 6 2.6959 1.8680 -5.9845 24 7 3.4109 1.3978 -6.9816 25 14 1.3295 3.0984 -6.3137 26 1 1.8776 4.4769 -6.2459 27 1 0.7613 2.8575 -7.6645 28 1 0.2631 2.9390 -5.2926 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5136 0.8900 31 1 -0.3633 0.5140 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.4466 2.0388 1.2294 35 1 1.8195 3.1642 1.0990 36 1 3.2335 1.5888 2.3905 37 1 1.8606 0.4635 2.5209 38 1 1.0451 2.9813 3.5073 39 1 -1.3429 4.7876 7.9931 40 1 -0.3829 5.9441 7.0395 41 1 0.0746 5.5808 8.7208 42 1 3.8568 1.6878 7.8773 43 1 2.5283 0.9798 8.8272 44 1 2.8093 0.4441 7.1532 45 1 0.5857 1.9106 -1.4426 46 1 1.8303 3.1446 -1.1321 47 1 1.5012 2.5802 -3.8157 48 1 3.2290 1.6893 -7.8888 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567348347.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:37 Heat of formation + Delta-G solvation = -5.402376 kcal Electronic energy + Delta-G solvation = -28527.821478 eV Core-core repulsion = 24426.114752 eV Total energy + Delta-G solvation = -4101.706726 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.69948 -39.75629 -38.99463 -37.30287 -35.15625 -33.93618 -33.68304 -32.65292 -31.69600 -30.55346 -29.78665 -29.52180 -27.15450 -26.06635 -24.26662 -23.76344 -22.15658 -21.38786 -20.74381 -20.02088 -19.27914 -18.73043 -18.18918 -16.52915 -16.48366 -16.36298 -16.14298 -15.81831 -15.43853 -15.00722 -14.81872 -14.48292 -14.27785 -13.82613 -13.59755 -13.55108 -13.39337 -13.35231 -13.06678 -13.01776 -12.94303 -12.76888 -12.44989 -12.36102 -12.16209 -11.95749 -11.80487 -11.58454 -11.29344 -11.09223 -10.80740 -10.62894 -10.59564 -10.40732 -10.19574 -9.99492 -9.56610 -9.44589 -8.74093 -8.64134 -8.19528 -8.03742 -6.32490 -3.83853 0.87653 2.35148 2.38315 2.69013 2.98529 2.98604 3.03509 3.12102 3.72492 3.79203 3.91136 4.07880 4.31919 4.48167 4.65468 4.69307 4.74475 4.86986 4.90119 4.96266 5.10675 5.20617 5.23962 5.27011 5.28622 5.32191 5.43226 5.48191 5.55351 5.63978 5.67183 5.70490 5.77360 5.79150 5.89200 5.94493 6.06100 6.12623 6.25210 6.40271 6.71745 6.99472 7.07192 7.16492 7.51806 7.56718 7.81097 8.13188 8.58976 8.94300 9.40997 9.82516 10.80715 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022105 B = 0.001878 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.355035 B =14905.972799 C =15559.789963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.045 3.955 3 N -0.506 5.506 4 C 0.040 3.960 5 C 0.123 3.877 6 N -0.729 5.729 7 C 0.596 3.404 8 O -0.517 6.517 9 C -0.096 4.096 10 N -0.554 5.554 11 H 0.420 0.580 12 C 0.243 3.757 13 C -0.074 4.074 14 N -0.495 5.495 15 C 0.103 3.897 16 C -0.079 4.079 17 C 0.040 3.960 18 C 0.453 3.547 19 O -0.555 6.555 20 N -0.593 5.593 21 C -0.304 4.304 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.881 5.881 25 Si 0.879 3.121 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.271 1.271 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.042 0.958 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.391 0.609 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.096 0.904 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.090 0.910 45 H 0.054 0.946 46 H 0.089 0.911 47 H 0.369 0.631 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.882 8.824 26.475 30.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.082 4.082 3 N -0.229 5.229 4 C -0.089 4.089 5 C 0.000 4.000 6 N -0.380 5.380 7 C 0.382 3.618 8 O -0.392 6.392 9 C -0.211 4.211 10 N -0.160 5.160 11 H 0.259 0.741 12 C -0.021 4.021 13 C -0.133 4.133 14 N -0.217 5.217 15 C -0.032 4.032 16 C -0.137 4.137 17 C -0.092 4.092 18 C 0.238 3.762 19 O -0.436 6.436 20 N -0.233 5.233 21 C -0.432 4.432 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.522 5.522 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.196 1.196 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.114 0.886 33 H 0.094 0.906 34 H 0.060 0.940 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.224 0.776 39 H 0.105 0.895 40 H 0.097 0.903 41 H 0.115 0.885 42 H 0.094 0.906 43 H 0.090 0.910 44 H 0.109 0.891 45 H 0.072 0.928 46 H 0.107 0.893 47 H 0.202 0.798 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.039 7.573 27.314 30.418 hybrid contribution -2.670 1.740 -1.998 3.761 sum -13.709 9.312 25.316 30.258 Atomic orbital electron populations 1.22459 0.98923 1.02487 1.01405 1.22306 0.91887 0.89664 1.04390 1.61649 1.59175 1.02137 0.99968 1.22284 0.97591 0.98594 0.90431 1.21384 1.00523 0.96021 0.82106 1.45811 1.49349 1.36551 1.06321 1.16747 0.80851 0.83036 0.81176 1.90855 1.34481 1.28618 1.85218 1.20893 1.05425 0.97809 0.96963 1.43170 1.36485 1.26667 1.09662 0.74137 1.23439 0.99728 0.99179 0.79775 1.20324 0.97556 0.92480 1.02923 1.70124 1.11492 1.06949 1.33099 1.21121 0.97759 0.96688 0.87614 1.20324 0.96393 0.95189 1.01757 1.21959 0.97984 0.98941 0.90276 1.19613 0.87388 0.86155 0.83031 1.90572 1.33468 1.35991 1.83558 1.42212 1.33060 1.41574 1.06451 1.19423 1.14930 1.24724 0.84152 0.86258 1.25035 0.97847 0.98001 0.95328 1.69618 1.39494 1.43354 0.99685 0.86679 0.81993 0.82007 0.78707 1.19652 1.20217 1.19639 0.91908 0.92945 0.92380 0.88603 0.90623 0.93969 0.90384 0.89774 0.90748 0.77585 0.89487 0.90310 0.88543 0.90550 0.90987 0.89119 0.92782 0.89320 0.79847 0.91633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.23 9.26 37.16 0.34 -1.89 16 2 C 0.05 0.65 5.52 -3.82 -0.02 0.63 16 3 N -0.51 -7.36 4.31 -236.07 -1.02 -8.38 16 4 C 0.04 0.40 4.81 -3.83 -0.02 0.39 16 5 C 0.12 1.31 5.60 -4.04 -0.02 1.29 16 6 N -0.73 -6.25 5.55 -61.59 -0.34 -6.59 16 7 C 0.60 6.64 7.79 -12.82 -0.10 6.54 16 8 O -0.52 -7.52 14.82 5.21 0.08 -7.44 16 9 C -0.10 -0.95 7.08 -82.14 -0.58 -1.53 16 10 N -0.55 -3.54 6.07 -7.02 -0.04 -3.58 16 11 H 0.42 1.13 8.32 -40.82 -0.34 0.79 16 12 C 0.24 1.78 8.12 -155.61 -1.26 0.52 16 13 C -0.07 -0.23 10.51 36.00 0.38 0.15 16 14 N -0.50 -5.29 11.20 -6.85 -0.08 -5.36 16 15 C 0.10 1.14 7.15 -82.52 -0.59 0.55 16 16 C -0.08 -0.79 9.88 36.00 0.36 -0.43 16 17 C 0.04 0.62 5.34 -4.98 -0.03 0.59 16 18 C 0.45 9.95 7.36 -10.99 -0.08 9.87 16 19 O -0.55 -14.57 14.70 5.54 0.08 -14.49 16 20 N -0.59 -13.76 5.09 -10.96 -0.06 -13.82 16 21 C -0.30 -8.46 10.16 -14.93 -0.15 -8.61 16 22 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 23 C 0.04 1.10 5.50 -17.47 -0.10 1.01 16 24 N -0.88 -25.56 13.96 55.50 0.77 -24.78 16 25 Si 0.88 19.02 27.74 -169.99 -4.71 14.31 16 26 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 27 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 28 H -0.27 -5.29 6.52 56.52 0.37 -4.92 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.51 6.26 -51.93 -0.33 0.19 16 31 H 0.06 0.70 6.29 -51.93 -0.33 0.38 16 32 H 0.10 1.72 6.54 -51.93 -0.34 1.38 16 33 H 0.08 1.01 6.51 -51.93 -0.34 0.67 16 34 H 0.04 0.36 5.98 -51.93 -0.31 0.05 16 35 H 0.08 0.70 7.86 -51.93 -0.41 0.30 16 36 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.07 0.87 6.57 -51.93 -0.34 0.52 16 38 H 0.39 2.06 7.72 -40.82 -0.31 1.74 16 39 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 40 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 41 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 42 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.09 0.98 6.48 -51.93 -0.34 0.65 16 45 H 0.05 0.74 5.97 -51.93 -0.31 0.43 16 46 H 0.09 1.18 7.81 -51.93 -0.41 0.78 16 47 H 0.37 7.47 5.76 -40.82 -0.24 7.24 16 48 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 388.99 15.07 5.86 5.86 Total: -1.00 -36.72 388.99 -8.17 -44.89 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -6.85 Total: 10.32 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: -1.87 Total: 9.06 kcal Atomic # 7 Polarization: -61.75 SS G_CDS: -0.76 Total: -62.51 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: 0.16 Total: -21.93 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -4.71 Total: 14.31 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.72 -8.17 -44.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567348347.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.491 kcal (2) G-P(sol) polarization free energy of solvation -36.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds