Wall clock time and date at job start Tue Mar 31 2020 20:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46900 * 109.47065 * 2 1 4 4 C 1.46891 * 111.00165 * 59.18049 * 3 2 1 5 5 C 1.53003 * 109.47155 * 66.04531 * 4 3 2 6 6 N 1.46500 * 109.47593 * 179.97438 * 5 4 3 7 7 C 1.34766 * 120.00129 * 180.02562 * 6 5 4 8 8 O 1.21678 * 120.00148 * 359.97438 * 7 6 5 9 9 C 1.46771 * 120.00146 * 180.02562 * 7 6 5 10 10 N 1.38145 * 126.84138 * 0.02562 * 9 7 6 11 11 H 0.97004 * 126.47844 * 359.94309 * 10 9 7 12 12 C 1.34498 * 107.05782 * 179.97438 * 10 9 7 13 13 C 1.50689 * 125.42347 * 179.97438 * 12 10 9 14 14 N 1.30862 * 109.15798 * 0.23867 * 12 10 9 15 15 C 1.33320 * 109.68743 * 359.60366 * 14 12 10 16 16 C 1.50695 * 126.10953 * 180.13643 * 15 14 12 17 17 C 1.46902 * 110.99695 * 295.22901 * 3 2 1 18 18 C 1.50699 * 109.47246 * 288.23724 * 17 3 2 19 19 O 1.21295 * 119.99920 * 354.30294 * 18 17 3 20 20 N 1.34778 * 120.00181 * 174.30302 * 18 17 3 21 21 C 1.37092 * 120.00051 * 180.02562 * 20 18 17 22 22 H 1.08001 * 120.00560 * 0.02562 * 21 20 18 23 23 C 1.38957 * 120.00152 * 179.97438 * 21 20 18 24 24 N 1.31403 * 120.00067 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 119.99763 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.47139 * 89.99543 * 25 23 21 27 27 H 1.48501 * 109.47136 * 209.99878 * 25 23 21 28 28 H 1.48498 * 109.47251 * 329.99741 * 25 23 21 29 29 H 1.09005 * 109.47137 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47488 * 299.98812 * 1 2 3 31 31 H 1.08997 * 109.47144 * 59.99103 * 1 2 3 32 32 H 1.09003 * 109.46932 * 239.99674 * 2 1 3 33 33 H 1.09000 * 109.47368 * 120.00168 * 2 1 3 34 34 H 1.09004 * 109.47297 * 306.04697 * 4 3 2 35 35 H 1.09002 * 109.47312 * 186.04797 * 4 3 2 36 36 H 1.09004 * 109.46883 * 59.99912 * 5 4 3 37 37 H 1.09002 * 109.47229 * 300.00318 * 5 4 3 38 38 H 0.97003 * 119.99234 * 0.02562 * 6 5 4 39 39 H 1.09000 * 109.47767 * 89.99795 * 13 12 10 40 40 H 1.09005 * 109.46939 * 329.99318 * 13 12 10 41 41 H 1.08997 * 109.47300 * 209.99999 * 13 12 10 42 42 H 1.09000 * 109.47197 * 270.30511 * 16 15 14 43 43 H 1.09002 * 109.47387 * 30.30618 * 16 15 14 44 44 H 1.08998 * 109.47073 * 150.30261 * 16 15 14 45 45 H 1.09002 * 109.47259 * 48.23951 * 17 3 2 46 46 H 1.09003 * 109.47282 * 168.23710 * 17 3 2 47 47 H 0.97000 * 119.99895 * 359.97438 * 20 18 17 48 48 H 0.97007 * 120.00062 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5327 2.1155 1.1777 5 6 2.1474 1.5121 2.4422 6 7 1.6623 2.2411 3.6168 7 6 2.0736 1.8831 4.8493 8 8 2.8474 0.9542 4.9865 9 6 1.5871 2.6130 6.0260 10 7 0.7111 3.6811 6.0345 11 1 0.2984 4.0947 5.2602 12 6 0.5389 4.0400 7.3193 13 6 -0.3388 5.1659 7.8015 14 7 1.2593 3.2592 8.0835 15 6 1.9100 2.3711 7.3317 16 6 2.8405 1.2964 7.8319 17 6 1.6440 2.0761 -1.2407 18 6 2.4640 1.5368 -2.3842 19 8 3.3516 0.7382 -2.1704 20 7 2.2112 1.9419 -3.6446 21 6 2.9569 1.4508 -4.6850 22 1 3.7466 0.7392 -4.4947 23 6 2.6959 1.8680 -5.9845 24 7 3.4109 1.3978 -6.9816 25 14 1.3295 3.0984 -6.3137 26 1 1.8776 4.4769 -6.2459 27 1 0.7613 2.8575 -7.6645 28 1 0.2631 2.9390 -5.2926 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5136 0.8900 31 1 -0.3633 0.5140 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.4466 2.0388 1.2294 35 1 1.8195 3.1642 1.0990 36 1 3.2335 1.5888 2.3905 37 1 1.8606 0.4635 2.5209 38 1 1.0451 2.9813 3.5073 39 1 -1.3429 4.7876 7.9931 40 1 -0.3829 5.9441 7.0395 41 1 0.0746 5.5808 8.7208 42 1 3.8568 1.6878 7.8773 43 1 2.5283 0.9798 8.8272 44 1 2.8093 0.4441 7.1532 45 1 0.5857 1.9106 -1.4426 46 1 1.8303 3.1446 -1.1321 47 1 1.5012 2.5802 -3.8157 48 1 3.2290 1.6893 -7.8888 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567348347.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:36 Heat of formation + Delta-G solvation = -36.718343 kcal Electronic energy + Delta-G solvation = -28529.179440 eV Core-core repulsion = 24426.114752 eV Total energy + Delta-G solvation = -4103.064688 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.34044 -40.79137 -40.33619 -38.67120 -36.14739 -35.81305 -34.37046 -33.73383 -33.23706 -31.53665 -30.85282 -30.08503 -28.23195 -27.14960 -25.79272 -24.79093 -22.91140 -22.06846 -21.78653 -21.15508 -20.78548 -19.99417 -19.41464 -17.74075 -17.45124 -17.30224 -17.00427 -16.84871 -16.71189 -16.46325 -15.86751 -15.46909 -15.27213 -14.94824 -14.87467 -14.66482 -14.61966 -14.20862 -14.07245 -13.97269 -13.95056 -13.61451 -13.29753 -13.23364 -13.10542 -13.05896 -13.00976 -12.78537 -12.53422 -12.40254 -12.15491 -11.97286 -11.68786 -11.58511 -11.42543 -11.07045 -11.00670 -10.39401 -10.30356 -10.21758 -9.42010 -9.16644 -8.39454 -6.00190 0.16759 1.29818 1.36673 1.45195 1.70905 1.72732 1.96810 2.00843 2.17851 2.24357 2.73477 3.16575 3.27050 3.31709 3.72025 3.80336 3.96919 4.01998 4.08418 4.12726 4.19706 4.30010 4.38481 4.42128 4.52383 4.54909 4.57422 4.68230 4.74906 4.78584 4.83709 4.86585 4.95213 5.01318 5.03149 5.11754 5.15685 5.24788 5.33417 5.52674 5.54827 5.90127 6.01924 6.15898 6.25594 6.38975 6.62446 6.88037 6.91645 7.03043 7.43191 8.02207 8.78466 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022105 B = 0.001878 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.355035 B =14905.972799 C =15559.789963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.047 3.953 3 N -0.535 5.535 4 C 0.049 3.951 5 C 0.130 3.870 6 N -0.708 5.708 7 C 0.595 3.405 8 O -0.560 6.560 9 C -0.106 4.106 10 N -0.536 5.536 11 H 0.439 0.561 12 C 0.254 3.746 13 C -0.073 4.073 14 N -0.532 5.532 15 C 0.078 3.922 16 C -0.076 4.076 17 C 0.054 3.946 18 C 0.450 3.550 19 O -0.608 6.608 20 N -0.594 5.594 21 C -0.326 4.326 22 H 0.052 0.948 23 C -0.019 4.019 24 N -0.937 5.937 25 Si 0.967 3.033 26 H -0.257 1.257 27 H -0.278 1.278 28 H -0.229 1.229 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.047 0.953 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.100 0.900 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.412 0.588 39 H 0.103 0.897 40 H 0.108 0.892 41 H 0.096 0.904 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.087 0.913 46 H 0.125 0.875 47 H 0.389 0.611 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.371 12.780 27.762 35.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.081 4.081 3 N -0.259 5.259 4 C -0.079 4.079 5 C 0.006 3.994 6 N -0.361 5.361 7 C 0.382 3.618 8 O -0.438 6.438 9 C -0.222 4.222 10 N -0.144 5.144 11 H 0.282 0.718 12 C -0.011 4.011 13 C -0.131 4.131 14 N -0.254 5.254 15 C -0.056 4.056 16 C -0.134 4.134 17 C -0.077 4.077 18 C 0.238 3.762 19 O -0.491 6.491 20 N -0.236 5.236 21 C -0.455 4.455 22 H 0.070 0.930 23 C -0.217 4.217 24 N -0.578 5.578 25 Si 0.787 3.213 26 H -0.181 1.181 27 H -0.203 1.203 28 H -0.152 1.152 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.118 0.882 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.248 0.752 39 H 0.121 0.879 40 H 0.126 0.874 41 H 0.114 0.886 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.095 0.905 45 H 0.104 0.896 46 H 0.142 0.858 47 H 0.225 0.775 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.584 11.579 28.604 34.571 hybrid contribution -1.164 0.435 -2.293 2.608 sum -16.747 12.014 26.312 33.423 Atomic orbital electron populations 1.22360 0.96133 1.03235 1.02512 1.22143 0.94120 0.89657 1.02137 1.61476 1.60907 1.02460 1.01095 1.22289 0.99087 0.98821 0.87687 1.21158 0.99082 0.95890 0.83253 1.45519 1.49038 1.36625 1.04901 1.16936 0.80302 0.82550 0.82025 1.90838 1.36498 1.30596 1.85894 1.20594 1.06629 0.99022 0.95921 1.43035 1.35504 1.25499 1.10349 0.71822 1.24253 0.98418 0.98737 0.79660 1.20558 0.97199 0.91630 1.03729 1.70117 1.12968 1.08009 1.34295 1.21340 0.98425 0.97302 0.88547 1.20253 0.96524 0.94817 1.01763 1.21867 0.97924 1.00195 0.87717 1.21009 0.86697 0.84397 0.84094 1.90557 1.35934 1.38086 1.84555 1.42026 1.33366 1.42296 1.05913 1.18974 1.15048 1.24976 0.86524 0.92987 1.26153 1.01147 1.00307 0.94081 1.69816 1.42060 1.45451 1.00493 0.85341 0.78318 0.78310 0.79370 1.18105 1.20282 1.15175 0.91573 0.90295 0.92457 0.93434 0.90456 0.90908 0.88171 0.92538 0.91949 0.75167 0.87886 0.87387 0.88570 0.90637 0.90256 0.90513 0.89576 0.85757 0.77524 0.91253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.69 9.26 71.98 0.67 -3.02 16 2 C 0.05 1.33 5.52 86.30 0.48 1.80 16 3 N -0.54 -14.49 4.31 -900.79 -3.88 -18.37 16 4 C 0.05 0.80 4.81 86.31 0.41 1.21 16 5 C 0.13 2.56 5.60 86.38 0.48 3.04 16 6 N -0.71 -10.43 5.55 -467.00 -2.59 -13.02 16 7 C 0.59 12.79 7.79 86.48 0.67 13.46 16 8 O -0.56 -16.79 14.82 -4.28 -0.06 -16.86 16 9 C -0.11 -1.97 7.08 40.01 0.28 -1.69 16 10 N -0.54 -5.27 6.07 -176.11 -1.07 -6.34 16 11 H 0.44 0.50 8.32 -92.71 -0.77 -0.27 16 12 C 0.25 3.06 8.12 138.19 1.12 4.18 16 13 C -0.07 -0.17 10.51 71.23 0.75 0.58 16 14 N -0.53 -10.79 11.20 -175.58 -1.97 -12.75 16 15 C 0.08 1.73 7.15 41.96 0.30 2.03 16 16 C -0.08 -1.59 9.88 71.23 0.70 -0.89 16 17 C 0.05 1.49 5.34 85.56 0.46 1.95 16 18 C 0.45 19.77 7.36 87.66 0.65 20.41 16 19 O -0.61 -33.59 14.70 -3.08 -0.05 -33.63 16 20 N -0.59 -27.28 5.09 -306.98 -1.56 -28.84 16 21 C -0.33 -18.97 10.16 84.04 0.85 -18.12 16 22 H 0.05 3.64 7.39 -2.91 -0.02 3.62 16 23 C -0.02 -1.03 5.50 84.93 0.47 -0.57 16 24 N -0.94 -56.55 13.96 21.66 0.30 -56.25 16 25 Si 0.97 37.91 27.74 68.60 1.90 39.82 16 26 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 27 H -0.28 -10.91 7.11 99.48 0.71 -10.20 16 28 H -0.23 -7.35 6.52 99.48 0.65 -6.70 16 29 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 30 H 0.08 1.17 6.26 -2.39 -0.01 1.15 16 31 H 0.06 1.16 6.29 -2.39 -0.02 1.15 16 32 H 0.05 1.79 6.54 -2.39 -0.02 1.77 16 33 H 0.08 2.08 6.51 -2.39 -0.02 2.07 16 34 H 0.07 0.81 5.98 -2.39 -0.01 0.80 16 35 H 0.10 1.27 7.86 -2.39 -0.02 1.25 16 36 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.06 1.40 6.57 -2.39 -0.02 1.38 16 38 H 0.41 2.61 7.72 -92.71 -0.72 1.90 16 39 H 0.10 -0.01 8.14 -2.39 -0.02 -0.03 16 40 H 0.11 -0.34 8.14 -2.38 -0.02 -0.36 16 41 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 42 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.08 1.80 6.48 -2.39 -0.02 1.78 16 45 H 0.09 1.91 5.97 -2.39 -0.01 1.89 16 46 H 0.12 2.64 7.81 -2.39 -0.02 2.62 16 47 H 0.39 14.51 5.76 -92.71 -0.53 13.98 16 48 H 0.28 15.32 8.31 -92.70 -0.77 14.55 16 Total: -1.00 -90.63 388.99 -1.73 -92.36 By element: Atomic # 1 Polarization: 30.53 SS G_CDS: -1.04 Total: 29.49 kcal Atomic # 6 Polarization: 16.10 SS G_CDS: 8.30 Total: 24.40 kcal Atomic # 7 Polarization: -124.80 SS G_CDS: -10.77 Total: -135.57 kcal Atomic # 8 Polarization: -50.38 SS G_CDS: -0.11 Total: -50.49 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 1.90 Total: 39.82 kcal Total: -90.63 -1.73 -92.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567348347.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.638 kcal (2) G-P(sol) polarization free energy of solvation -90.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds