Wall clock time and date at job start Tue Mar 31 2020 20:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46502 * 119.99968 * 2 1 4 4 C 1.52993 * 109.47557 * 269.99925 * 3 2 1 5 5 N 1.46900 * 109.47424 * 179.97438 * 4 3 2 6 6 C 1.46895 * 110.99858 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.46934 * 180.02562 * 6 5 4 8 8 O 1.21288 * 120.00258 * 359.97438 * 7 6 5 9 9 N 1.34781 * 119.99854 * 180.02562 * 7 6 5 10 10 C 1.37093 * 119.99653 * 180.02562 * 9 7 6 11 11 H 1.07999 * 120.00462 * 359.97438 * 10 9 7 12 12 C 1.38954 * 119.99759 * 180.02562 * 10 9 7 13 13 N 1.31411 * 120.00034 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99792 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47364 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47279 * 119.99805 * 14 12 10 17 17 H 1.48501 * 109.46936 * 239.99374 * 14 12 10 18 18 C 1.34773 * 119.99921 * 180.02562 * 2 1 3 19 19 O 1.21290 * 119.99899 * 179.97438 * 18 2 1 20 20 C 1.50702 * 120.00105 * 359.97438 * 18 2 1 21 21 C 1.53001 * 109.47025 * 180.02562 * 20 18 2 22 22 C 1.50700 * 109.47027 * 180.02562 * 21 20 18 23 23 N 1.30502 * 125.64425 * 270.27259 * 22 21 20 24 24 C 1.34127 * 109.25683 * 180.14781 * 23 22 21 25 25 C 1.34672 * 108.01948 * 359.61488 * 24 23 22 26 26 N 1.35041 * 125.65474 * 89.99384 * 22 21 20 27 27 C 1.46499 * 126.39624 * 0.02562 * 26 22 21 28 28 H 1.09001 * 109.46998 * 269.99977 * 1 2 3 29 29 H 1.09003 * 109.47319 * 29.99646 * 1 2 3 30 30 H 1.08991 * 109.47361 * 149.99778 * 1 2 3 31 31 H 1.09002 * 109.47208 * 30.00865 * 3 2 1 32 32 H 1.08998 * 109.47069 * 150.00072 * 3 2 1 33 33 H 1.08997 * 109.47441 * 300.00277 * 4 3 2 34 34 H 1.09007 * 109.46659 * 60.00263 * 4 3 2 35 35 H 1.00902 * 110.99507 * 56.05226 * 5 4 3 36 36 H 1.09000 * 109.47787 * 300.00231 * 6 5 4 37 37 H 1.09000 * 109.47505 * 60.00114 * 6 5 4 38 38 H 0.96995 * 120.00251 * 0.02562 * 9 7 6 39 39 H 0.97001 * 119.99496 * 179.97438 * 13 12 10 40 40 H 1.08999 * 109.46935 * 59.99782 * 20 18 2 41 41 H 1.08998 * 109.47016 * 299.99820 * 20 18 2 42 42 H 1.08994 * 109.47142 * 60.00173 * 21 20 18 43 43 H 1.09006 * 109.46650 * 299.99882 * 21 20 18 44 44 H 1.08002 * 125.99481 * 179.88589 * 24 23 22 45 45 H 1.07997 * 126.59503 * 180.24939 * 25 24 23 46 46 H 1.09003 * 109.47221 * 270.01947 * 27 26 22 47 47 H 1.09003 * 109.47097 * 30.02049 * 27 26 22 48 48 H 1.09001 * 109.46668 * 150.02021 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4424 5 7 3.1865 2.9830 -1.4424 6 6 3.4492 3.4392 -2.8137 7 6 4.2024 4.7439 -2.7735 8 8 4.4915 5.2446 -1.7073 9 7 4.5539 5.3548 -3.9223 10 6 5.2396 6.5413 -3.8857 11 1 5.4978 6.9868 -2.9363 12 6 5.6016 7.1714 -5.0701 13 7 5.2870 6.6297 -6.2253 14 14 6.5365 8.7879 -5.0201 15 1 6.7672 9.1829 -3.6074 16 1 7.8421 8.6261 -5.7088 17 1 5.7429 9.8400 -5.7046 18 6 2.1388 -1.1672 -0.0005 19 8 3.3517 -1.1672 -0.0010 20 6 1.3853 -2.4723 -0.0005 21 6 2.3796 -3.6352 -0.0005 22 6 1.6261 -4.9403 -0.0012 23 7 1.2411 -5.5967 1.0590 24 6 0.6023 -6.7135 0.6801 25 6 0.5834 -6.7463 -0.6661 26 7 1.2328 -5.6216 -1.0988 27 6 1.4593 -5.2304 -2.4923 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8899 -0.5138 31 1 1.6085 2.0284 0.5140 32 1 3.1499 1.1384 0.5138 33 1 3.0416 0.9509 -1.9563 34 1 1.5001 1.8409 -1.9562 35 1 4.0440 2.9058 -0.9162 36 1 4.0453 2.6919 -3.3375 37 1 2.5035 3.5812 -3.3369 38 1 4.3218 4.9549 -4.7750 39 1 5.5394 7.0698 -7.0520 40 1 0.7583 -2.5298 -0.8903 41 1 0.7591 -2.5302 0.8897 42 1 3.0062 -3.5775 0.8894 43 1 3.0062 -3.5774 -0.8906 44 1 0.1738 -7.4543 1.3390 45 1 0.1408 -7.5125 -1.2853 46 1 0.6259 -4.6190 -2.8381 47 1 2.3841 -4.6578 -2.5631 48 1 1.5366 -6.1236 -3.1123 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567536218.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:27 Heat of formation + Delta-G solvation = -6.527930 kcal Electronic energy + Delta-G solvation = -27817.591918 eV Core-core repulsion = 23715.836384 eV Total energy + Delta-G solvation = -4101.755534 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.48028 -40.21181 -38.28690 -36.50782 -35.00751 -34.49386 -34.06540 -33.78288 -31.24256 -30.30476 -29.06362 -27.48806 -27.09651 -26.22890 -24.84061 -23.64760 -22.06931 -21.76329 -20.10675 -19.51231 -19.10905 -17.89927 -17.75045 -17.02127 -16.58753 -16.43432 -15.94939 -15.92343 -15.52068 -15.02373 -14.56436 -14.45993 -14.18146 -13.96448 -13.85038 -13.70848 -13.50140 -13.33277 -13.25672 -13.18503 -13.03294 -12.86720 -12.73187 -12.38189 -12.14922 -12.02537 -11.58102 -11.49840 -11.49535 -11.13130 -10.98631 -10.33730 -10.33383 -10.22180 -10.10067 -9.99905 -9.51579 -8.98550 -8.76410 -8.45520 -8.08204 -7.95595 -6.41451 -3.82103 1.61355 2.34211 2.35132 2.62426 2.83566 3.16897 3.27433 3.35063 3.89395 3.91628 4.13723 4.23024 4.29069 4.42330 4.44708 4.53998 4.61172 4.64848 4.77133 4.88079 4.95460 5.00241 5.01274 5.10472 5.18335 5.20166 5.24323 5.28263 5.35881 5.49769 5.50129 5.64811 5.73826 5.84241 5.87770 5.89449 5.98367 6.19670 6.29295 6.37617 6.75123 7.07369 7.17632 7.55976 7.63477 7.74040 7.89490 8.07057 8.61751 9.18454 9.54755 10.06203 10.76421 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.024078 B = 0.001559 C = 0.001508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.584513 B =17954.264103 C =18560.011084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.615 5.615 3 C 0.116 3.884 4 C 0.047 3.953 5 N -0.667 5.667 6 C 0.053 3.947 7 C 0.441 3.559 8 O -0.582 6.582 9 N -0.564 5.564 10 C -0.299 4.299 11 H 0.104 0.896 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.930 3.070 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.282 1.282 18 C 0.513 3.487 19 O -0.535 6.535 20 C -0.132 4.132 21 C -0.019 4.019 22 C 0.208 3.792 23 N -0.488 5.488 24 C -0.028 4.028 25 C -0.061 4.061 26 N -0.458 5.458 27 C 0.067 3.933 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.030 0.970 34 H 0.069 0.931 35 H 0.352 0.648 36 H 0.043 0.957 37 H 0.085 0.915 38 H 0.392 0.608 39 H 0.271 0.729 40 H 0.090 0.910 41 H 0.102 0.898 42 H 0.104 0.896 43 H 0.086 0.914 44 H 0.170 0.830 45 H 0.174 0.826 46 H 0.079 0.921 47 H 0.090 0.910 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.439 -26.644 6.323 30.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.348 5.348 3 C -0.007 4.007 4 C -0.084 4.084 5 N -0.300 5.300 6 C -0.080 4.080 7 C 0.227 3.773 8 O -0.466 6.466 9 N -0.201 5.201 10 C -0.428 4.428 11 H 0.122 0.878 12 C -0.180 4.180 13 N -0.544 5.544 14 Si 0.757 3.243 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.208 1.208 18 C 0.301 3.699 19 O -0.411 6.411 20 C -0.172 4.172 21 C -0.059 4.059 22 C -0.054 4.054 23 N -0.206 5.206 24 C -0.176 4.176 25 C -0.194 4.194 26 N -0.141 5.141 27 C -0.075 4.075 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.048 0.952 34 H 0.088 0.912 35 H 0.171 0.829 36 H 0.061 0.939 37 H 0.103 0.897 38 H 0.225 0.775 39 H 0.080 0.920 40 H 0.109 0.891 41 H 0.120 0.880 42 H 0.123 0.877 43 H 0.105 0.895 44 H 0.187 0.813 45 H 0.191 0.809 46 H 0.097 0.903 47 H 0.109 0.891 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.965 -25.565 7.576 30.100 hybrid contribution 0.542 -0.453 -1.982 2.105 sum -13.422 -26.018 5.594 29.806 Atomic orbital electron populations 1.21860 0.79211 1.03444 1.02224 1.47835 1.07191 1.06159 1.73663 1.21438 0.98343 0.83788 0.97119 1.22245 0.98958 0.90558 0.96622 1.60014 1.28476 1.27797 1.13704 1.21651 1.00181 0.96118 0.90048 1.19798 0.85171 0.87315 0.85051 1.90524 1.59225 1.67231 1.29639 1.41864 1.50058 1.21425 1.06749 1.19770 1.30783 0.97681 0.94595 0.87824 1.25266 0.98197 0.99888 0.94631 1.69623 1.47227 1.40059 0.97473 0.85792 0.78813 0.81095 0.78599 1.19189 1.20781 1.20760 1.20579 0.88033 0.85284 0.76002 1.90743 1.13823 1.87328 1.49227 1.21631 0.99192 0.91589 1.04835 1.19723 0.95481 0.84906 1.05767 1.23241 1.03018 0.97809 0.81373 1.70273 1.15443 1.06646 1.28284 1.22328 1.04526 0.97970 0.92812 1.22726 1.06228 0.93414 0.97010 1.45338 1.42408 1.18647 1.07723 1.22115 1.03631 1.02625 0.79163 0.92169 0.90434 0.91145 0.89263 0.89617 0.95195 0.91222 0.82912 0.93860 0.89661 0.77480 0.91952 0.89137 0.88013 0.87741 0.89542 0.81294 0.80879 0.90285 0.89136 0.89426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.43 10.24 59.85 0.61 1.04 16 2 N -0.61 -5.67 2.87 -181.57 -0.52 -6.19 16 3 C 0.12 1.30 5.67 -4.04 -0.02 1.28 16 4 C 0.05 0.60 6.01 -3.83 -0.02 0.58 16 5 N -0.67 -10.99 6.13 -115.06 -0.70 -11.70 16 6 C 0.05 0.95 6.17 -4.98 -0.03 0.92 16 7 C 0.44 10.58 7.82 -10.98 -0.09 10.49 16 8 O -0.58 -16.03 15.78 5.55 0.09 -15.94 16 9 N -0.56 -14.46 5.29 -10.96 -0.06 -14.52 16 10 C -0.30 -8.41 9.68 -14.93 -0.14 -8.56 16 11 H 0.10 3.07 7.16 -52.49 -0.38 2.69 16 12 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 13 N -0.90 -24.65 13.05 55.50 0.72 -23.93 16 14 Si 0.93 21.16 29.55 -169.99 -5.02 16.13 16 15 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 16 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 18 C 0.51 5.30 7.67 -10.99 -0.08 5.21 16 19 O -0.53 -7.62 15.56 5.55 0.09 -7.53 16 20 C -0.13 -0.94 4.23 -27.88 -0.12 -1.06 16 21 C -0.02 -0.16 4.81 -27.88 -0.13 -0.30 16 22 C 0.21 1.90 7.16 -155.42 -1.11 0.78 16 23 N -0.49 -5.40 11.25 -10.81 -0.12 -5.52 16 24 C -0.03 -0.24 11.87 -17.81 -0.21 -0.45 16 25 C -0.06 -0.41 11.58 -16.56 -0.19 -0.60 16 26 N -0.46 -3.21 3.15 -121.27 -0.38 -3.59 16 27 C 0.07 0.24 10.97 59.85 0.66 0.89 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.08 0.41 8.07 -51.93 -0.42 -0.01 16 30 H 0.07 0.28 6.44 -51.93 -0.33 -0.06 16 31 H 0.09 0.93 8.07 -51.93 -0.42 0.51 16 32 H 0.09 1.11 7.42 -51.93 -0.39 0.72 16 33 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.35 6.11 8.43 -39.29 -0.33 5.78 16 36 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 38 H 0.39 9.57 7.90 -40.82 -0.32 9.25 16 39 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 40 H 0.09 0.48 7.40 -51.93 -0.38 0.09 16 41 H 0.10 0.69 8.11 -51.93 -0.42 0.27 16 42 H 0.10 1.02 8.10 -51.93 -0.42 0.60 16 43 H 0.09 0.67 7.02 -51.93 -0.36 0.31 16 44 H 0.17 1.06 8.06 -52.49 -0.42 0.63 16 45 H 0.17 0.60 8.06 -52.49 -0.42 0.18 16 46 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 47 H 0.09 0.29 7.05 -51.93 -0.37 -0.07 16 48 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 LS Contribution 405.92 15.07 6.12 6.12 Total: -1.00 -36.63 405.92 -8.27 -44.89 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -7.48 Total: 11.06 kcal Atomic # 6 Polarization: 11.69 SS G_CDS: -0.99 Total: 10.70 kcal Atomic # 7 Polarization: -64.37 SS G_CDS: -1.06 Total: -65.44 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: 0.17 Total: -23.47 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -36.63 -8.27 -44.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567536218.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.365 kcal (2) G-P(sol) polarization free energy of solvation -36.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds