Wall clock time and date at job start Tue Mar 31 2020 20:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46502 * 119.99968 * 2 1 4 4 C 1.52993 * 109.47557 * 269.99925 * 3 2 1 5 5 N 1.46900 * 109.47424 * 179.97438 * 4 3 2 6 6 C 1.46895 * 110.99858 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.46934 * 180.02562 * 6 5 4 8 8 O 1.21288 * 120.00258 * 359.97438 * 7 6 5 9 9 N 1.34781 * 119.99854 * 180.02562 * 7 6 5 10 10 C 1.37093 * 119.99653 * 180.02562 * 9 7 6 11 11 H 1.07999 * 120.00462 * 359.97438 * 10 9 7 12 12 C 1.38954 * 119.99759 * 180.02562 * 10 9 7 13 13 N 1.31411 * 120.00034 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99792 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47364 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47279 * 119.99805 * 14 12 10 17 17 H 1.48501 * 109.46936 * 239.99374 * 14 12 10 18 18 C 1.34773 * 119.99921 * 180.02562 * 2 1 3 19 19 O 1.21290 * 119.99899 * 179.97438 * 18 2 1 20 20 C 1.50702 * 120.00105 * 359.97438 * 18 2 1 21 21 C 1.53001 * 109.47025 * 180.02562 * 20 18 2 22 22 C 1.50700 * 109.47027 * 180.02562 * 21 20 18 23 23 N 1.30502 * 125.64425 * 270.27259 * 22 21 20 24 24 C 1.34127 * 109.25683 * 180.14781 * 23 22 21 25 25 C 1.34672 * 108.01948 * 359.61488 * 24 23 22 26 26 N 1.35041 * 125.65474 * 89.99384 * 22 21 20 27 27 C 1.46499 * 126.39624 * 0.02562 * 26 22 21 28 28 H 1.09001 * 109.46998 * 269.99977 * 1 2 3 29 29 H 1.09003 * 109.47319 * 29.99646 * 1 2 3 30 30 H 1.08991 * 109.47361 * 149.99778 * 1 2 3 31 31 H 1.09002 * 109.47208 * 30.00865 * 3 2 1 32 32 H 1.08998 * 109.47069 * 150.00072 * 3 2 1 33 33 H 1.08997 * 109.47441 * 300.00277 * 4 3 2 34 34 H 1.09007 * 109.46659 * 60.00263 * 4 3 2 35 35 H 1.00902 * 110.99507 * 56.05226 * 5 4 3 36 36 H 1.09000 * 109.47787 * 300.00231 * 6 5 4 37 37 H 1.09000 * 109.47505 * 60.00114 * 6 5 4 38 38 H 0.96995 * 120.00251 * 0.02562 * 9 7 6 39 39 H 0.97001 * 119.99496 * 179.97438 * 13 12 10 40 40 H 1.08999 * 109.46935 * 59.99782 * 20 18 2 41 41 H 1.08998 * 109.47016 * 299.99820 * 20 18 2 42 42 H 1.08994 * 109.47142 * 60.00173 * 21 20 18 43 43 H 1.09006 * 109.46650 * 299.99882 * 21 20 18 44 44 H 1.08002 * 125.99481 * 179.88589 * 24 23 22 45 45 H 1.07997 * 126.59503 * 180.24939 * 25 24 23 46 46 H 1.09003 * 109.47221 * 270.01947 * 27 26 22 47 47 H 1.09003 * 109.47097 * 30.02049 * 27 26 22 48 48 H 1.09001 * 109.46668 * 150.02021 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4424 5 7 3.1865 2.9830 -1.4424 6 6 3.4492 3.4392 -2.8137 7 6 4.2024 4.7439 -2.7735 8 8 4.4915 5.2446 -1.7073 9 7 4.5539 5.3548 -3.9223 10 6 5.2396 6.5413 -3.8857 11 1 5.4978 6.9868 -2.9363 12 6 5.6016 7.1714 -5.0701 13 7 5.2870 6.6297 -6.2253 14 14 6.5365 8.7879 -5.0201 15 1 6.7672 9.1829 -3.6074 16 1 7.8421 8.6261 -5.7088 17 1 5.7429 9.8400 -5.7046 18 6 2.1388 -1.1672 -0.0005 19 8 3.3517 -1.1672 -0.0010 20 6 1.3853 -2.4723 -0.0005 21 6 2.3796 -3.6352 -0.0005 22 6 1.6261 -4.9403 -0.0012 23 7 1.2411 -5.5967 1.0590 24 6 0.6023 -6.7135 0.6801 25 6 0.5834 -6.7463 -0.6661 26 7 1.2328 -5.6216 -1.0988 27 6 1.4593 -5.2304 -2.4923 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8899 -0.5138 31 1 1.6085 2.0284 0.5140 32 1 3.1499 1.1384 0.5138 33 1 3.0416 0.9509 -1.9563 34 1 1.5001 1.8409 -1.9562 35 1 4.0440 2.9058 -0.9162 36 1 4.0453 2.6919 -3.3375 37 1 2.5035 3.5812 -3.3369 38 1 4.3218 4.9549 -4.7750 39 1 5.5394 7.0698 -7.0520 40 1 0.7583 -2.5298 -0.8903 41 1 0.7591 -2.5302 0.8897 42 1 3.0062 -3.5775 0.8894 43 1 3.0062 -3.5774 -0.8906 44 1 0.1738 -7.4543 1.3390 45 1 0.1408 -7.5125 -1.2853 46 1 0.6259 -4.6190 -2.8381 47 1 2.3841 -4.6578 -2.5631 48 1 1.5366 -6.1236 -3.1123 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567536218.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:25 Heat of formation + Delta-G solvation = -33.581616 kcal Electronic energy + Delta-G solvation = -27818.765054 eV Core-core repulsion = 23715.836384 eV Total energy + Delta-G solvation = -4102.928670 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.03314 -41.02649 -40.15959 -37.57356 -36.24391 -35.71543 -35.02826 -34.65964 -33.28715 -31.30368 -29.80020 -28.11947 -27.87278 -27.30274 -26.12637 -24.90637 -23.08379 -22.29896 -21.17378 -20.65916 -20.13364 -19.87430 -18.39697 -17.93853 -17.62288 -17.31261 -17.08759 -16.80434 -16.56170 -16.42949 -15.88670 -15.60252 -15.40509 -15.09636 -14.92400 -14.65456 -14.35099 -14.19348 -13.95947 -13.83041 -13.73025 -13.64689 -13.54100 -13.42050 -13.33864 -13.21531 -12.97365 -12.81551 -12.70386 -12.41321 -12.16197 -12.11495 -12.06980 -11.52487 -10.96353 -10.92700 -10.54485 -10.40133 -10.02821 -9.73122 -9.43025 -9.32181 -8.47826 -5.96665 1.07682 1.36439 1.41996 1.55968 1.56941 1.83239 1.97290 2.03044 2.18880 2.29747 2.96638 3.19245 3.30128 3.53902 3.69704 3.87867 3.94445 3.98310 4.06580 4.12939 4.16367 4.28165 4.31996 4.40466 4.46221 4.49471 4.49670 4.57007 4.61054 4.66646 4.68714 4.72548 4.82299 4.92082 4.97048 4.98612 5.01650 5.36385 5.40306 5.44186 5.83538 5.85493 6.05549 6.24491 6.27670 6.35537 6.58586 7.11348 7.11932 7.16246 7.54230 8.09552 8.69791 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.024078 B = 0.001559 C = 0.001508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.584513 B =17954.264103 C =18560.011084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.612 5.612 3 C 0.121 3.879 4 C 0.057 3.943 5 N -0.678 5.678 6 C 0.067 3.933 7 C 0.437 3.563 8 O -0.623 6.623 9 N -0.572 5.572 10 C -0.335 4.335 11 H 0.079 0.921 12 C -0.012 4.012 13 N -0.920 5.920 14 Si 0.994 3.006 15 H -0.274 1.274 16 H -0.271 1.271 17 H -0.270 1.270 18 C 0.509 3.491 19 O -0.582 6.582 20 C -0.116 4.116 21 C -0.013 4.013 22 C 0.192 3.808 23 N -0.530 5.530 24 C -0.059 4.059 25 C -0.047 4.047 26 N -0.456 5.456 27 C 0.059 3.941 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.062 0.938 33 H 0.022 0.978 34 H 0.089 0.911 35 H 0.343 0.657 36 H 0.061 0.939 37 H 0.109 0.891 38 H 0.397 0.603 39 H 0.278 0.722 40 H 0.118 0.882 41 H 0.109 0.891 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.182 0.818 45 H 0.208 0.792 46 H 0.095 0.905 47 H 0.090 0.910 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.318 -27.572 4.690 32.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.344 5.344 3 C -0.003 4.003 4 C -0.073 4.073 5 N -0.310 5.310 6 C -0.065 4.065 7 C 0.224 3.776 8 O -0.509 6.509 9 N -0.209 5.209 10 C -0.465 4.465 11 H 0.097 0.903 12 C -0.212 4.212 13 N -0.561 5.561 14 Si 0.818 3.182 15 H -0.198 1.198 16 H -0.196 1.196 17 H -0.195 1.195 18 C 0.299 3.701 19 O -0.462 6.462 20 C -0.157 4.157 21 C -0.053 4.053 22 C -0.070 4.070 23 N -0.249 5.249 24 C -0.207 4.207 25 C -0.181 4.181 26 N -0.139 5.139 27 C -0.082 4.082 28 H 0.089 0.911 29 H 0.104 0.896 30 H 0.111 0.889 31 H 0.117 0.883 32 H 0.080 0.920 33 H 0.040 0.960 34 H 0.107 0.893 35 H 0.161 0.839 36 H 0.079 0.921 37 H 0.127 0.873 38 H 0.231 0.769 39 H 0.087 0.913 40 H 0.136 0.864 41 H 0.127 0.873 42 H 0.099 0.901 43 H 0.107 0.893 44 H 0.199 0.801 45 H 0.225 0.775 46 H 0.114 0.886 47 H 0.109 0.891 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -15.898 -26.511 5.908 31.472 hybrid contribution 1.083 -0.232 -1.467 1.838 sum -14.816 -26.744 4.441 30.894 Atomic orbital electron populations 1.22136 0.76624 1.05016 1.03475 1.47918 1.08692 1.05029 1.72758 1.21253 0.97920 0.85072 0.96025 1.22247 0.98914 0.88497 0.97679 1.60038 1.28244 1.30054 1.12653 1.21519 1.00540 0.92987 0.91476 1.20842 0.84194 0.88658 0.83865 1.90492 1.60631 1.68809 1.30999 1.41921 1.50327 1.21170 1.07508 1.19725 1.33098 0.99451 0.94226 0.90316 1.26047 0.98393 1.02813 0.93939 1.69677 1.47273 1.41180 0.97927 0.84856 0.77932 0.77181 0.78267 1.19841 1.19613 1.19473 1.21130 0.87618 0.86406 0.74994 1.90725 1.16006 1.88011 1.51500 1.21553 0.98641 0.89112 1.06375 1.19597 0.95528 0.85445 1.04727 1.23180 1.03747 0.98139 0.81947 1.70194 1.16748 1.08043 1.29954 1.22719 1.05538 0.98110 0.94303 1.23259 1.04664 0.93410 0.96755 1.45550 1.41518 1.18249 1.08539 1.22401 1.04345 1.03952 0.77469 0.91109 0.89614 0.88862 0.88275 0.91964 0.95956 0.89312 0.83898 0.92070 0.87270 0.76929 0.91261 0.86368 0.87328 0.90148 0.89309 0.80100 0.77489 0.88628 0.89145 0.87455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.58 10.24 127.77 1.31 1.89 16 2 N -0.61 -10.37 2.87 -846.77 -2.43 -12.81 16 3 C 0.12 2.63 5.67 86.38 0.49 3.12 16 4 C 0.06 1.36 6.01 86.30 0.52 1.88 16 5 N -0.68 -21.90 6.13 -517.95 -3.17 -25.08 16 6 C 0.07 2.35 6.17 85.56 0.53 2.87 16 7 C 0.44 21.15 7.82 87.66 0.69 21.83 16 8 O -0.62 -35.17 15.78 -3.06 -0.05 -35.22 16 9 N -0.57 -29.67 5.29 -306.98 -1.62 -31.30 16 10 C -0.34 -19.26 9.68 84.04 0.81 -18.45 16 11 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 12 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 13 N -0.92 -49.63 13.05 21.66 0.28 -49.35 16 14 Si 0.99 43.11 29.55 68.60 2.03 45.14 16 15 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 16 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 17 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 18 C 0.51 10.19 7.67 87.66 0.67 10.86 16 19 O -0.58 -17.08 15.56 -3.06 -0.05 -17.12 16 20 C -0.12 -1.51 4.23 29.85 0.13 -1.38 16 21 C -0.01 -0.22 4.81 29.85 0.14 -0.08 16 22 C 0.19 3.40 7.16 138.13 0.99 4.39 16 23 N -0.53 -11.75 11.25 -188.13 -2.12 -13.87 16 24 C -0.06 -0.98 11.87 83.52 0.99 0.01 16 25 C -0.05 -0.54 11.58 83.09 0.96 0.43 16 26 N -0.46 -5.51 3.15 -537.60 -1.69 -7.21 16 27 C 0.06 0.26 10.97 127.77 1.40 1.66 16 28 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.09 0.63 8.07 -2.39 -0.02 0.61 16 30 H 0.09 0.38 6.44 -2.39 -0.02 0.37 16 31 H 0.10 1.95 8.07 -2.39 -0.02 1.93 16 32 H 0.06 1.66 7.42 -2.39 -0.02 1.64 16 33 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 35 H 0.34 12.11 8.43 -89.69 -0.76 11.35 16 36 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 38 H 0.40 19.43 7.90 -92.71 -0.73 18.70 16 39 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 40 H 0.12 0.88 7.40 -2.39 -0.02 0.87 16 41 H 0.11 1.31 8.11 -2.39 -0.02 1.29 16 42 H 0.08 1.70 8.10 -2.39 -0.02 1.68 16 43 H 0.09 1.38 7.02 -2.38 -0.02 1.36 16 44 H 0.18 2.19 8.06 -2.91 -0.02 2.17 16 45 H 0.21 0.71 8.06 -2.91 -0.02 0.69 16 46 H 0.10 0.13 8.14 -2.39 -0.02 0.11 16 47 H 0.09 0.41 7.05 -2.39 -0.02 0.40 16 48 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 Total: -1.00 -81.77 405.92 0.77 -81.00 By element: Atomic # 1 Polarization: 37.47 SS G_CDS: -0.50 Total: 36.96 kcal Atomic # 6 Polarization: 18.75 SS G_CDS: 10.10 Total: 28.85 kcal Atomic # 7 Polarization: -128.85 SS G_CDS: -10.76 Total: -139.60 kcal Atomic # 8 Polarization: -52.25 SS G_CDS: -0.10 Total: -52.34 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -81.77 0.77 -81.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567536218.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.419 kcal (2) G-P(sol) polarization free energy of solvation -81.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds