Wall clock time and date at job start Tue Mar 31 2020 21:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35493 * 126.97563 * 2 1 4 4 N 1.30519 * 107.30510 * 180.02562 * 3 2 1 5 5 N 1.28604 * 109.67489 * 359.97438 * 4 3 2 6 6 C 1.30518 * 109.66680 * 0.02562 * 5 4 3 7 7 C 1.50704 * 126.34487 * 179.97438 * 6 5 4 8 8 O 1.42892 * 109.47136 * 90.02171 * 7 6 5 9 9 C 1.42901 * 114.00185 * 179.97438 * 8 7 6 10 10 C 1.50696 * 109.47460 * 180.02562 * 9 8 7 11 11 O 1.21279 * 119.99875 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00194 * 180.02562 * 10 9 8 13 13 C 1.46505 * 120.00119 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47069 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.46807 * 180.02562 * 14 13 12 16 16 H 1.08999 * 110.88849 * 54.30046 * 15 14 13 17 17 C 1.55165 * 111.00208 * 178.18157 * 15 14 13 18 18 C 1.54318 * 102.94068 * 153.57185 * 17 15 14 19 19 N 1.47022 * 107.27297 * 337.80757 * 18 17 15 20 20 C 1.36944 * 125.64542 * 178.97475 * 19 18 17 21 21 H 1.07995 * 119.99643 * 179.97438 * 20 19 18 22 22 C 1.38809 * 120.00252 * 359.97438 * 20 19 18 23 23 N 1.31619 * 119.99872 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00140 * 180.02562 * 22 20 19 25 25 H 1.48491 * 109.47163 * 89.99769 * 24 22 20 26 26 H 1.48502 * 109.47184 * 209.99807 * 24 22 20 27 27 H 1.48503 * 109.46899 * 329.99826 * 24 22 20 28 28 C 1.47463 * 108.72140 * 358.97311 * 19 18 17 29 29 H 1.08997 * 109.47389 * 89.97574 * 1 2 3 30 30 H 1.09001 * 109.46836 * 209.97765 * 1 2 3 31 31 H 1.09005 * 109.47349 * 329.97388 * 1 2 3 32 32 H 1.08002 * 126.35259 * 359.97432 * 3 2 1 33 33 H 1.09000 * 109.47554 * 210.02742 * 7 6 5 34 34 H 1.09005 * 109.46969 * 330.02216 * 7 6 5 35 35 H 1.09000 * 109.47588 * 300.00546 * 9 8 7 36 36 H 1.09004 * 109.46983 * 60.00143 * 9 8 7 37 37 H 0.96996 * 120.00127 * 0.02562 * 12 10 9 38 38 H 1.09000 * 109.47107 * 300.00743 * 13 12 10 39 39 H 1.09000 * 109.46583 * 60.00207 * 13 12 10 40 40 H 1.08998 * 109.47058 * 300.00106 * 14 13 12 41 41 H 1.08998 * 109.46892 * 59.99973 * 14 13 12 42 42 H 1.08995 * 110.71409 * 271.93535 * 17 15 14 43 43 H 1.09000 * 110.71922 * 35.03169 * 17 15 14 44 44 H 1.09008 * 109.88346 * 97.22552 * 18 17 15 45 45 H 1.09000 * 109.88422 * 218.23150 * 18 17 15 46 46 H 0.97007 * 119.99938 * 180.02562 * 23 22 20 47 47 H 1.09000 * 110.34810 * 265.24732 * 28 19 18 48 48 H 1.09004 * 110.40113 * 142.92042 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0824 0.0000 4 7 3.5090 0.6431 -0.0006 5 7 3.5091 -0.6429 -0.0004 6 6 2.2801 -1.0823 -0.0002 7 6 1.8477 -2.5260 -0.0005 8 8 1.7108 -2.9825 1.3466 9 6 1.3015 -4.3470 1.4592 10 6 1.1892 -4.7193 2.9151 11 8 1.4350 -3.8970 3.7720 12 7 0.8157 -5.9661 3.2650 13 6 0.7070 -6.3282 4.6804 14 6 0.2699 -7.7895 4.8009 15 6 0.1559 -8.1674 6.2791 16 1 -0.5010 -7.4764 6.8073 17 6 -0.3302 -9.6318 6.4428 18 6 0.2512 -10.0377 7.8134 19 7 1.3870 -9.1453 8.0875 20 6 2.1629 -9.1646 9.2157 21 1 2.9782 -8.4644 9.3223 22 6 1.9015 -10.0840 10.2223 23 7 0.9075 -10.9370 10.0926 24 14 2.9595 -10.1097 11.7616 25 1 2.3737 -9.2017 12.7801 26 1 3.0128 -11.4917 12.3026 27 1 4.3331 -9.6563 11.4257 28 6 1.5526 -8.2260 6.9465 29 1 -0.3634 0.0004 -1.0276 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3634 0.8898 0.5143 32 1 1.9701 2.1171 -0.0004 33 1 0.8910 -2.6187 -0.5146 34 1 2.5961 -3.1293 -0.5144 35 1 0.3334 -4.4771 0.9756 36 1 2.0383 -4.9884 0.9755 37 1 0.6194 -6.6239 2.5797 38 1 1.6751 -6.1978 5.1641 39 1 -0.0300 -5.6871 5.1639 40 1 -0.6980 -7.9202 4.3171 41 1 1.0073 -8.4303 4.3174 42 1 -1.4191 -9.6773 6.4569 43 1 0.0705 -10.2622 5.6489 44 1 -0.5075 -9.9205 8.5873 45 1 0.5898 -11.0733 7.7805 46 1 0.7246 -11.5792 10.7962 47 1 2.2910 -8.6186 6.2475 48 1 1.8481 -7.2365 7.2955 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567712652.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:11 Heat of formation + Delta-G solvation = 28.142375 kcal Electronic energy + Delta-G solvation = -27831.255864 eV Core-core repulsion = 23731.003747 eV Total energy + Delta-G solvation = -4100.252117 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.54619 -40.01495 -38.25318 -37.68534 -35.53096 -35.25032 -33.06497 -32.15749 -31.02537 -29.33135 -28.64297 -28.17153 -26.91936 -26.04295 -24.53585 -22.84676 -22.34476 -21.51572 -20.92971 -19.98801 -19.48306 -17.98133 -17.60721 -17.22350 -16.89334 -16.84937 -16.47600 -15.77455 -15.58663 -15.33703 -15.16913 -14.75615 -14.51185 -13.98834 -13.93584 -13.83092 -13.62260 -13.36516 -12.81274 -12.50166 -12.45447 -12.22156 -11.97092 -11.91673 -11.82070 -11.54512 -11.11179 -10.85092 -10.82166 -10.74948 -10.68066 -10.37257 -10.15398 -10.12598 -9.96352 -9.84958 -9.78361 -9.70436 -9.58980 -9.19617 -8.56342 -6.78530 -5.67506 -3.00474 1.16593 1.94185 2.30374 2.40787 2.69899 3.43198 3.44896 3.48275 3.50127 3.94322 4.02547 4.12034 4.28845 4.41549 4.42825 4.53741 4.58557 4.60858 4.72175 4.75368 4.89204 5.05068 5.07474 5.26626 5.34907 5.50346 5.60185 5.63555 5.64963 5.74615 5.86758 6.00586 6.08987 6.19481 6.24465 6.31286 6.38774 6.41114 6.55916 6.60765 6.75042 6.98646 7.28506 7.60556 7.66111 7.86461 8.03016 8.29131 8.30403 9.26719 9.87127 10.53290 11.44324 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022011 B = 0.001562 C = 0.001494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.778705 B =17921.145290 C =18738.915644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.469 5.469 3 C 0.157 3.843 4 N -0.296 5.296 5 N -0.269 5.269 6 C 0.173 3.827 7 C 0.150 3.850 8 O -0.356 6.356 9 C 0.045 3.955 10 C 0.509 3.491 11 O -0.516 6.516 12 N -0.727 5.727 13 C 0.119 3.881 14 C -0.115 4.115 15 C -0.101 4.101 16 H 0.076 0.924 17 C -0.138 4.138 18 C 0.177 3.823 19 N -0.607 5.607 20 C -0.226 4.226 21 H 0.078 0.922 22 C -0.010 4.010 23 N -0.923 5.923 24 Si 0.912 3.088 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.281 1.281 28 C 0.139 3.861 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.222 0.778 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.400 0.600 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.057 0.943 43 H 0.055 0.945 44 H 0.045 0.955 45 H 0.041 0.959 46 H 0.251 0.749 47 H 0.017 0.983 48 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.133 16.873 -27.833 33.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.160 5.160 3 C -0.131 4.131 4 N -0.136 5.136 5 N -0.112 5.112 6 C -0.094 4.094 7 C 0.071 3.929 8 O -0.273 6.273 9 C -0.035 4.035 10 C 0.293 3.707 11 O -0.390 6.390 12 N -0.381 5.381 13 C -0.004 4.004 14 C -0.153 4.153 15 C -0.121 4.121 16 H 0.094 0.906 17 C -0.176 4.176 18 C 0.052 3.948 19 N -0.333 5.333 20 C -0.355 4.355 21 H 0.095 0.905 22 C -0.206 4.206 23 N -0.571 5.571 24 Si 0.742 3.258 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.207 1.207 28 C 0.013 3.987 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.115 0.885 32 H 0.238 0.762 33 H 0.090 0.910 34 H 0.110 0.890 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.234 0.766 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.059 0.941 46 H 0.061 0.939 47 H 0.035 0.965 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.415 17.470 -26.809 32.636 hybrid contribution -1.184 -0.440 0.349 1.310 sum -7.599 17.031 -26.460 32.372 Atomic orbital electron populations 1.22194 0.74972 1.06000 1.04192 1.46184 1.09460 1.06692 1.53667 1.26536 0.87152 0.94991 1.04386 1.74318 1.18106 1.03042 1.18094 1.74292 1.16884 1.03340 1.16658 1.24251 0.87488 0.91360 1.06317 1.20501 1.01079 0.86128 0.85175 1.88101 1.89306 1.25694 1.24225 1.22266 1.01230 0.84526 0.95468 1.20111 0.77754 0.82539 0.90251 1.90784 1.47357 1.49227 1.51626 1.45944 1.70289 1.12290 1.09548 1.21529 1.02619 0.96205 0.80034 1.21742 1.01376 0.94132 0.98100 1.22278 0.99252 0.97599 0.92975 0.90593 1.22897 0.99479 0.94837 1.00413 1.21127 0.89553 0.93913 0.90204 1.44496 1.34880 1.37169 1.16766 1.19087 1.08686 1.14418 0.93295 0.90464 1.24800 0.98740 0.98363 0.98717 1.69973 1.31037 1.22542 1.33587 0.86117 0.79695 0.76820 0.83154 1.21636 1.21705 1.20693 1.21623 0.93207 0.93904 0.89953 0.89689 0.88700 0.88536 0.76172 0.90974 0.88970 0.89940 0.89493 0.76648 0.90754 0.91332 0.91645 0.91213 0.92388 0.92581 0.93720 0.94099 0.93851 0.96487 0.94432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.14 10.90 59.85 0.65 0.80 16 2 N -0.47 -3.24 3.15 -122.69 -0.39 -3.62 16 3 C 0.16 1.20 12.74 -89.95 -1.15 0.05 16 4 N -0.30 -3.65 12.21 29.69 0.36 -3.29 16 5 N -0.27 -3.56 12.21 32.80 0.40 -3.16 16 6 C 0.17 1.67 7.66 -154.99 -1.19 0.48 16 7 C 0.15 0.99 6.11 36.01 0.22 1.21 16 8 O -0.36 -3.55 9.86 -55.14 -0.54 -4.10 16 9 C 0.05 0.31 6.42 36.00 0.23 0.54 16 10 C 0.51 5.74 7.91 -10.99 -0.09 5.66 16 11 O -0.52 -8.77 16.50 -14.35 -0.24 -9.01 16 12 N -0.73 -6.69 5.56 -60.29 -0.33 -7.02 16 13 C 0.12 1.42 5.55 -4.04 -0.02 1.40 16 14 C -0.12 -1.34 4.84 -26.73 -0.13 -1.47 16 15 C -0.10 -1.65 3.04 -88.47 -0.27 -1.92 16 16 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 17 C -0.14 -2.46 6.42 -24.90 -0.16 -2.62 16 18 C 0.18 4.30 5.37 -3.07 -0.02 4.29 16 19 N -0.61 -15.75 3.40 -170.04 -0.58 -16.33 16 20 C -0.23 -6.47 10.28 -15.06 -0.15 -6.63 16 21 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 22 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 23 N -0.92 -27.52 10.31 55.49 0.57 -26.95 16 24 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 27 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 28 C 0.14 2.87 6.04 -2.51 -0.02 2.85 16 29 H 0.08 0.00 8.14 -51.93 -0.42 -0.42 16 30 H 0.09 0.20 7.81 -51.93 -0.41 -0.20 16 31 H 0.10 0.04 8.14 -51.93 -0.42 -0.38 16 32 H 0.22 0.61 8.06 -52.49 -0.42 0.18 16 33 H 0.07 0.20 7.86 -51.93 -0.41 -0.21 16 34 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 36 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.40 2.20 8.47 -40.82 -0.35 1.85 16 38 H 0.07 1.06 7.59 -51.93 -0.39 0.66 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.78 8.04 -51.93 -0.42 0.37 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.06 0.92 8.04 -51.93 -0.42 0.50 16 44 H 0.04 1.21 7.38 -51.92 -0.38 0.82 16 45 H 0.04 1.10 7.50 -51.93 -0.39 0.71 16 46 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 47 H 0.02 0.35 7.96 -51.93 -0.41 -0.06 16 48 H 0.04 0.78 8.10 -51.93 -0.42 0.35 16 LS Contribution 399.04 15.07 6.01 6.01 Total: -1.00 -41.21 399.04 -9.70 -50.91 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: -7.77 Total: -5.25 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -2.18 Total: 4.26 kcal Atomic # 7 Polarization: -60.42 SS G_CDS: 0.04 Total: -60.38 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: -0.78 Total: -13.10 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -41.21 -9.70 -50.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567712652.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.053 kcal (2) G-P(sol) polarization free energy of solvation -41.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds