Wall clock time and date at job start Tue Mar 31 2020 21:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35493 * 126.97563 * 2 1 4 4 N 1.30519 * 107.30510 * 180.02562 * 3 2 1 5 5 N 1.28604 * 109.67489 * 359.97438 * 4 3 2 6 6 C 1.30518 * 109.66680 * 0.02562 * 5 4 3 7 7 C 1.50704 * 126.34487 * 179.97438 * 6 5 4 8 8 O 1.42892 * 109.47136 * 90.02171 * 7 6 5 9 9 C 1.42901 * 114.00185 * 179.97438 * 8 7 6 10 10 C 1.50696 * 109.47460 * 180.02562 * 9 8 7 11 11 O 1.21279 * 119.99875 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00194 * 180.02562 * 10 9 8 13 13 C 1.46505 * 120.00119 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47069 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.46807 * 180.02562 * 14 13 12 16 16 H 1.08999 * 110.88849 * 54.30046 * 15 14 13 17 17 C 1.55165 * 111.00208 * 178.18157 * 15 14 13 18 18 C 1.54318 * 102.94068 * 153.57185 * 17 15 14 19 19 N 1.47022 * 107.27297 * 337.80757 * 18 17 15 20 20 C 1.36944 * 125.64542 * 178.97475 * 19 18 17 21 21 H 1.07995 * 119.99643 * 179.97438 * 20 19 18 22 22 C 1.38809 * 120.00252 * 359.97438 * 20 19 18 23 23 N 1.31619 * 119.99872 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00140 * 180.02562 * 22 20 19 25 25 H 1.48491 * 109.47163 * 89.99769 * 24 22 20 26 26 H 1.48502 * 109.47184 * 209.99807 * 24 22 20 27 27 H 1.48503 * 109.46899 * 329.99826 * 24 22 20 28 28 C 1.47463 * 108.72140 * 358.97311 * 19 18 17 29 29 H 1.08997 * 109.47389 * 89.97574 * 1 2 3 30 30 H 1.09001 * 109.46836 * 209.97765 * 1 2 3 31 31 H 1.09005 * 109.47349 * 329.97388 * 1 2 3 32 32 H 1.08002 * 126.35259 * 359.97432 * 3 2 1 33 33 H 1.09000 * 109.47554 * 210.02742 * 7 6 5 34 34 H 1.09005 * 109.46969 * 330.02216 * 7 6 5 35 35 H 1.09000 * 109.47588 * 300.00546 * 9 8 7 36 36 H 1.09004 * 109.46983 * 60.00143 * 9 8 7 37 37 H 0.96996 * 120.00127 * 0.02562 * 12 10 9 38 38 H 1.09000 * 109.47107 * 300.00743 * 13 12 10 39 39 H 1.09000 * 109.46583 * 60.00207 * 13 12 10 40 40 H 1.08998 * 109.47058 * 300.00106 * 14 13 12 41 41 H 1.08998 * 109.46892 * 59.99973 * 14 13 12 42 42 H 1.08995 * 110.71409 * 271.93535 * 17 15 14 43 43 H 1.09000 * 110.71922 * 35.03169 * 17 15 14 44 44 H 1.09008 * 109.88346 * 97.22552 * 18 17 15 45 45 H 1.09000 * 109.88422 * 218.23150 * 18 17 15 46 46 H 0.97007 * 119.99938 * 180.02562 * 23 22 20 47 47 H 1.09000 * 110.34810 * 265.24732 * 28 19 18 48 48 H 1.09004 * 110.40113 * 142.92042 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0824 0.0000 4 7 3.5090 0.6431 -0.0006 5 7 3.5091 -0.6429 -0.0004 6 6 2.2801 -1.0823 -0.0002 7 6 1.8477 -2.5260 -0.0005 8 8 1.7108 -2.9825 1.3466 9 6 1.3015 -4.3470 1.4592 10 6 1.1892 -4.7193 2.9151 11 8 1.4350 -3.8970 3.7720 12 7 0.8157 -5.9661 3.2650 13 6 0.7070 -6.3282 4.6804 14 6 0.2699 -7.7895 4.8009 15 6 0.1559 -8.1674 6.2791 16 1 -0.5010 -7.4764 6.8073 17 6 -0.3302 -9.6318 6.4428 18 6 0.2512 -10.0377 7.8134 19 7 1.3870 -9.1453 8.0875 20 6 2.1629 -9.1646 9.2157 21 1 2.9782 -8.4644 9.3223 22 6 1.9015 -10.0840 10.2223 23 7 0.9075 -10.9370 10.0926 24 14 2.9595 -10.1097 11.7616 25 1 2.3737 -9.2017 12.7801 26 1 3.0128 -11.4917 12.3026 27 1 4.3331 -9.6563 11.4257 28 6 1.5526 -8.2260 6.9465 29 1 -0.3634 0.0004 -1.0276 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3634 0.8898 0.5143 32 1 1.9701 2.1171 -0.0004 33 1 0.8910 -2.6187 -0.5146 34 1 2.5961 -3.1293 -0.5144 35 1 0.3334 -4.4771 0.9756 36 1 2.0383 -4.9884 0.9755 37 1 0.6194 -6.6239 2.5797 38 1 1.6751 -6.1978 5.1641 39 1 -0.0300 -5.6871 5.1639 40 1 -0.6980 -7.9202 4.3171 41 1 1.0073 -8.4303 4.3174 42 1 -1.4191 -9.6773 6.4569 43 1 0.0705 -10.2622 5.6489 44 1 -0.5075 -9.9205 8.5873 45 1 0.5898 -11.0733 7.7805 46 1 0.7246 -11.5792 10.7962 47 1 2.2910 -8.6186 6.2475 48 1 1.8481 -7.2365 7.2955 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567712652.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:09 Heat of formation + Delta-G solvation = -1.531490 kcal Electronic energy + Delta-G solvation = -27832.542619 eV Core-core repulsion = 23731.003747 eV Total energy + Delta-G solvation = -4101.538872 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -44.14380 -40.85358 -39.44504 -38.69068 -36.42995 -36.01426 -34.75578 -32.85296 -32.48020 -30.86220 -29.60546 -28.56571 -27.96164 -27.10690 -26.20095 -23.58642 -23.41901 -22.09233 -21.90487 -21.72962 -20.80428 -18.87478 -18.56503 -18.16119 -17.83896 -17.42734 -17.12697 -16.91500 -16.55568 -16.36242 -16.20644 -15.87323 -15.62888 -15.51913 -14.90609 -14.57786 -14.27517 -14.11570 -13.85619 -13.69354 -13.65758 -13.31378 -13.22172 -13.02510 -13.00691 -12.81970 -12.64147 -12.58961 -12.22977 -12.01603 -11.80306 -11.54982 -11.45066 -11.38273 -11.31283 -11.14013 -10.88695 -10.83743 -10.71276 -10.44521 -10.09728 -8.88903 -7.86372 -5.21272 0.62261 1.43184 1.45193 1.51836 1.53983 1.59994 1.69426 2.00357 2.48221 2.91395 3.31188 3.45967 3.64607 3.68773 3.77994 3.83588 3.85875 3.97911 4.00159 4.16825 4.20737 4.26896 4.33046 4.35776 4.40317 4.41087 4.59599 4.63193 4.69601 4.71412 4.78029 4.86233 4.92125 5.01884 5.09457 5.14808 5.18686 5.27811 5.43881 5.44108 5.54323 5.71952 5.80103 5.84906 5.93507 6.20747 6.60438 7.10889 7.28816 7.64344 7.78896 8.42651 9.23752 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022011 B = 0.001562 C = 0.001494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.778705 B =17921.145290 C =18738.915644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.466 5.466 3 C 0.167 3.833 4 N -0.354 5.354 5 N -0.328 5.328 6 C 0.164 3.836 7 C 0.150 3.850 8 O -0.398 6.398 9 C 0.050 3.950 10 C 0.502 3.498 11 O -0.585 6.585 12 N -0.708 5.708 13 C 0.123 3.877 14 C -0.097 4.097 15 C -0.086 4.086 16 H 0.070 0.930 17 C -0.121 4.121 18 C 0.180 3.820 19 N -0.632 5.632 20 C -0.245 4.245 21 H 0.077 0.923 22 C -0.067 4.067 23 N -0.950 5.950 24 Si 0.978 3.022 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.271 1.271 28 C 0.132 3.868 29 H 0.111 0.889 30 H 0.097 0.903 31 H 0.114 0.886 32 H 0.264 0.736 33 H 0.117 0.883 34 H 0.101 0.899 35 H 0.131 0.869 36 H 0.116 0.884 37 H 0.423 0.577 38 H 0.044 0.956 39 H 0.057 0.943 40 H 0.102 0.898 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.006 0.994 45 H 0.004 0.996 46 H 0.247 0.753 47 H 0.025 0.975 48 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.118 17.146 -30.811 36.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.156 5.156 3 C -0.121 4.121 4 N -0.193 5.193 5 N -0.170 5.170 6 C -0.105 4.105 7 C 0.072 3.928 8 O -0.316 6.316 9 C -0.029 4.029 10 C 0.289 3.711 11 O -0.465 6.465 12 N -0.363 5.363 13 C -0.001 4.001 14 C -0.135 4.135 15 C -0.106 4.106 16 H 0.089 0.911 17 C -0.159 4.159 18 C 0.055 3.945 19 N -0.358 5.358 20 C -0.374 4.374 21 H 0.095 0.905 22 C -0.260 4.260 23 N -0.599 5.599 24 Si 0.806 3.194 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.196 1.196 28 C 0.007 3.993 29 H 0.130 0.870 30 H 0.115 0.885 31 H 0.133 0.867 32 H 0.279 0.721 33 H 0.135 0.865 34 H 0.119 0.881 35 H 0.149 0.851 36 H 0.134 0.866 37 H 0.261 0.739 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.120 0.880 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.097 0.903 44 H 0.025 0.975 45 H 0.022 0.978 46 H 0.056 0.944 47 H 0.043 0.957 48 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -8.425 17.722 -29.860 35.731 hybrid contribution -0.606 -0.484 1.272 1.489 sum -9.031 17.238 -28.589 34.584 Atomic orbital electron populations 1.22580 0.72023 1.07079 1.06272 1.46479 1.11094 1.05639 1.52379 1.27320 0.86195 0.96773 1.01861 1.74166 1.21033 1.03271 1.20855 1.74145 1.19576 1.04134 1.19182 1.24848 0.87174 0.93291 1.05218 1.20787 1.03571 0.84295 0.84114 1.88032 1.89955 1.27343 1.26305 1.22428 1.04614 0.83723 0.92087 1.21059 0.76087 0.82054 0.91921 1.90758 1.50525 1.51266 1.53929 1.45708 1.69201 1.12457 1.08901 1.21260 1.00715 0.96492 0.81607 1.21581 1.03837 0.93513 0.94537 1.22168 0.95817 0.96698 0.95958 0.91118 1.22755 1.00756 0.95724 0.96650 1.20956 0.88336 0.92108 0.93143 1.44855 1.34950 1.38534 1.17458 1.19459 1.09071 1.14266 0.94642 0.90542 1.25648 1.00255 0.98332 1.01797 1.70196 1.32468 1.23071 1.34187 0.85091 0.78445 0.76574 0.79319 1.21309 1.21703 1.19608 1.21851 0.96317 0.92288 0.88812 0.87031 0.88470 0.86708 0.72052 0.86497 0.88137 0.85129 0.86594 0.73931 0.93749 0.92478 0.87951 0.89869 0.89840 0.90318 0.97540 0.97779 0.94405 0.95706 0.95329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.06 10.90 127.77 1.39 1.45 16 2 N -0.47 -5.63 3.15 -542.07 -1.71 -7.33 16 3 C 0.17 2.40 12.74 180.11 2.30 4.70 16 4 N -0.35 -9.05 12.21 -59.99 -0.73 -9.79 16 5 N -0.33 -9.01 12.21 -50.16 -0.61 -9.62 16 6 C 0.16 3.04 7.66 137.98 1.06 4.10 16 7 C 0.15 1.61 6.11 71.24 0.43 2.05 16 8 O -0.40 -7.19 9.86 -129.94 -1.28 -8.47 16 9 C 0.05 0.50 6.42 71.23 0.46 0.96 16 10 C 0.50 10.41 7.91 87.66 0.69 11.10 16 11 O -0.59 -20.20 16.50 16.01 0.26 -19.93 16 12 N -0.71 -10.92 5.56 -463.06 -2.57 -13.49 16 13 C 0.12 2.74 5.55 86.38 0.48 3.22 16 14 C -0.10 -1.88 4.84 30.59 0.15 -1.73 16 15 C -0.09 -2.66 3.04 -9.40 -0.03 -2.69 16 16 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 17 C -0.12 -4.05 6.42 31.78 0.20 -3.85 16 18 C 0.18 8.94 5.37 86.73 0.47 9.41 16 19 N -0.63 -33.58 3.40 -691.89 -2.35 -35.93 16 20 C -0.25 -14.40 10.28 84.03 0.86 -13.54 16 21 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 22 C -0.07 -3.98 5.49 84.86 0.47 -3.52 16 23 N -0.95 -58.62 10.31 21.65 0.22 -58.40 16 24 Si 0.98 47.44 29.55 68.60 2.03 49.46 16 25 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 26 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 27 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 28 C 0.13 5.44 6.04 86.85 0.52 5.96 16 29 H 0.11 -0.45 8.14 -2.39 -0.02 -0.47 16 30 H 0.10 0.10 7.81 -2.39 -0.02 0.08 16 31 H 0.11 -0.29 8.14 -2.38 -0.02 -0.31 16 32 H 0.26 0.86 8.06 -2.91 -0.02 0.84 16 33 H 0.12 0.13 7.86 -2.39 -0.02 0.11 16 34 H 0.10 0.84 8.14 -2.38 -0.02 0.83 16 35 H 0.13 0.06 8.14 -2.39 -0.02 0.04 16 36 H 0.12 0.51 8.14 -2.38 -0.02 0.49 16 37 H 0.42 2.62 8.47 -92.71 -0.79 1.84 16 38 H 0.04 1.26 7.59 -2.39 -0.02 1.24 16 39 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.08 1.48 8.04 -2.39 -0.02 1.46 16 42 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 43 H 0.08 2.32 8.04 -2.39 -0.02 2.30 16 44 H 0.01 0.36 7.38 -2.38 -0.02 0.34 16 45 H 0.00 0.22 7.50 -2.39 -0.02 0.20 16 46 H 0.25 14.74 8.31 -92.70 -0.77 13.97 16 47 H 0.03 1.00 7.96 -2.39 -0.02 0.98 16 48 H 0.03 1.21 8.10 -2.39 -0.02 1.19 16 Total: -1.00 -100.00 399.04 2.89 -97.11 By element: Atomic # 1 Polarization: -1.42 SS G_CDS: 0.18 Total: -1.24 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: 9.45 Total: 17.64 kcal Atomic # 7 Polarization: -126.81 SS G_CDS: -7.75 Total: -134.56 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -1.02 Total: -28.41 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 2.03 Total: 49.46 kcal Total: -100.00 2.89 -97.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567712652.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.581 kcal (2) G-P(sol) polarization free energy of solvation -100.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds