Wall clock time and date at job start Tue Mar 31 2020 20:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46508 * 109.46799 * 2 1 4 4 C 1.34776 * 119.99797 * 275.12324 * 3 2 1 5 5 O 1.21274 * 119.99878 * 185.18330 * 4 3 2 6 6 C 1.50701 * 120.00073 * 5.19505 * 4 3 2 7 7 C 1.53000 * 109.47213 * 179.97438 * 6 4 3 8 8 N 1.46500 * 109.47258 * 179.97438 * 7 6 4 9 9 N 1.40171 * 126.34793 * 270.02217 * 8 7 6 10 10 C 1.29405 * 108.13826 * 179.97438 * 9 8 7 11 11 N 1.37359 * 108.82855 * 0.02562 * 10 9 8 12 12 C 1.46500 * 125.83180 * 180.02562 * 11 10 9 13 13 C 1.34815 * 108.33665 * 359.72973 * 11 10 9 14 14 O 1.21810 * 126.30784 * 180.28268 * 13 11 10 15 15 C 1.46498 * 119.99938 * 95.13064 * 3 2 1 16 16 H 1.09000 * 110.91317 * 190.38857 * 15 3 2 17 17 C 1.55153 * 111.00638 * 66.48689 * 15 3 2 18 18 C 1.54330 * 102.94139 * 277.42425 * 17 15 3 19 19 N 1.47024 * 107.26976 * 337.80807 * 18 17 15 20 20 C 1.36937 * 125.64472 * 178.97846 * 19 18 17 21 21 H 1.08000 * 119.99657 * 179.97438 * 20 19 18 22 22 C 1.38809 * 120.00216 * 359.97438 * 20 19 18 23 23 N 1.31620 * 120.00066 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00165 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46920 * 89.99457 * 24 22 20 26 26 H 1.48497 * 109.47308 * 210.00116 * 24 22 20 27 27 H 1.48502 * 109.47092 * 330.00300 * 24 22 20 28 28 C 1.47422 * 108.70277 * 358.93991 * 19 18 17 29 29 H 1.09005 * 109.46847 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47250 * 300.00001 * 1 2 3 31 31 H 1.09002 * 109.47024 * 60.00352 * 1 2 3 32 32 H 1.08995 * 109.47250 * 239.99999 * 2 1 3 33 33 H 1.09002 * 109.47024 * 119.99648 * 2 1 3 34 34 H 1.09008 * 109.46638 * 299.98991 * 6 4 3 35 35 H 1.08999 * 109.47577 * 59.98936 * 6 4 3 36 36 H 1.08998 * 109.46991 * 299.99754 * 7 6 4 37 37 H 1.09003 * 109.47204 * 59.99643 * 7 6 4 38 38 H 1.07993 * 125.58406 * 179.97438 * 10 9 8 39 39 H 1.09004 * 109.47193 * 359.97235 * 12 11 10 40 40 H 1.09000 * 109.47074 * 119.97074 * 12 11 10 41 41 H 1.08995 * 109.47186 * 239.97314 * 12 11 10 42 42 H 1.08996 * 110.72444 * 35.78523 * 17 15 3 43 43 H 1.08997 * 110.72332 * 159.06321 * 17 15 3 44 44 H 1.09004 * 109.87879 * 97.22018 * 18 17 15 45 45 H 1.08995 * 109.88352 * 218.38741 * 18 17 15 46 46 H 0.97000 * 119.99910 * 179.97438 * 23 22 20 47 47 H 1.08997 * 110.36299 * 265.28749 * 28 19 18 48 48 H 1.09003 * 110.36730 * 142.96544 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1446 2.0514 -1.1626 5 8 2.6364 3.1598 -1.1732 6 6 1.6744 1.4233 -2.4492 7 6 1.9306 2.3862 -3.6103 8 7 1.4740 1.7754 -4.8611 9 7 2.2374 0.9742 -5.7215 10 6 1.4880 0.6241 -6.7167 11 7 0.2398 1.1714 -6.5458 12 6 -0.8984 1.0118 -7.4543 13 6 0.2391 1.8751 -5.3958 14 8 -0.7022 2.4898 -4.9270 15 6 2.3694 2.0341 1.2636 16 1 2.5370 3.1011 1.1169 17 6 3.6074 1.3606 1.9124 18 6 2.9970 0.1459 2.6428 19 7 1.5746 0.4416 2.8682 20 6 0.6718 -0.3928 3.4715 21 1 -0.3554 -0.0814 3.5907 22 6 1.0770 -1.6388 3.9298 23 7 2.3288 -2.0185 3.7841 24 14 -0.1543 -2.7768 4.7535 25 1 -0.7954 -3.6381 3.7276 26 1 0.5468 -3.6287 5.7474 27 1 -1.1934 -1.9680 5.4401 28 6 1.2814 1.7856 2.3380 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.2187 0.4944 -2.6202 35 1 0.6072 1.2118 -2.3817 36 1 1.3861 3.3148 -3.4391 37 1 2.9977 2.5979 -3.6780 38 1 1.7941 0.0041 -7.5462 39 1 -0.6051 0.3868 -8.2978 40 1 -1.7245 0.5400 -6.9223 41 1 -1.2123 1.9899 -7.8187 42 1 4.3144 1.0361 1.1488 43 1 4.0867 2.0359 2.6212 44 1 3.0966 -0.7466 2.0249 45 1 3.5004 -0.0038 3.5979 46 1 2.6120 -2.8891 4.1047 47 1 1.3540 2.5302 3.1307 48 1 0.2898 1.8071 1.8858 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567940140.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:45 Heat of formation + Delta-G solvation = 56.489763 kcal Electronic energy + Delta-G solvation = -30470.622796 eV Core-core repulsion = 26371.599914 eV Total energy + Delta-G solvation = -4099.022882 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.61869 -40.01568 -37.66966 -37.41285 -35.82111 -34.60087 -33.03409 -32.28278 -30.30739 -29.95598 -28.82016 -27.85804 -27.32423 -25.04897 -24.36532 -22.87896 -22.39904 -21.38197 -20.43770 -20.08519 -18.49615 -17.93024 -17.03581 -16.93920 -16.84975 -16.30844 -15.84317 -15.72625 -15.24046 -14.70366 -14.61229 -14.27493 -13.86422 -13.80767 -13.59633 -13.21368 -13.16204 -12.96479 -12.79988 -12.50505 -12.22924 -12.12240 -12.06417 -11.92184 -11.81924 -11.39574 -11.25357 -10.98402 -10.89144 -10.77278 -10.44418 -10.42542 -10.33746 -10.15782 -10.07146 -9.85475 -9.66429 -9.30216 -8.76534 -8.68552 -8.17539 -6.87212 -5.76219 -3.09570 1.52905 1.70404 2.47649 2.84060 2.87208 3.36115 3.41230 3.43005 3.43991 4.14070 4.42316 4.45916 4.68734 4.75160 4.83338 4.86018 5.04377 5.10653 5.30461 5.38525 5.44251 5.47328 5.51740 5.54464 5.68274 5.70713 5.76493 5.88558 5.91999 6.01220 6.03297 6.21945 6.28483 6.31416 6.34862 6.46262 6.54434 6.63892 6.75636 6.92113 7.13310 7.39091 7.51601 7.54772 7.76893 7.84642 7.87288 8.18890 8.45627 9.16828 9.76587 10.42497 11.35069 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016303 B = 0.002818 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.108705 B = 9932.532809 C =10808.049723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.089 3.911 3 N -0.582 5.582 4 C 0.520 3.480 5 O -0.557 6.557 6 C -0.159 4.159 7 C 0.178 3.822 8 N -0.449 5.449 9 N -0.278 5.278 10 C 0.249 3.751 11 N -0.564 5.564 12 C 0.101 3.899 13 C 0.641 3.359 14 O -0.551 6.551 15 C 0.124 3.876 16 H 0.097 0.903 17 C -0.156 4.156 18 C 0.174 3.826 19 N -0.601 5.601 20 C -0.223 4.223 21 H 0.077 0.923 22 C -0.006 4.006 23 N -0.922 5.922 24 Si 0.909 3.091 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.282 1.282 28 C 0.123 3.877 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.036 0.964 32 H 0.056 0.944 33 H 0.131 0.869 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.230 0.770 39 H 0.092 0.908 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.062 0.938 43 H 0.067 0.933 44 H 0.050 0.950 45 H 0.043 0.957 46 H 0.252 0.748 47 H 0.030 0.970 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.250 3.106 -22.489 22.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.033 4.033 3 N -0.313 5.313 4 C 0.307 3.693 5 O -0.437 6.437 6 C -0.200 4.200 7 C 0.057 3.943 8 N -0.270 5.270 9 N -0.099 5.099 10 C -0.050 4.050 11 N -0.294 5.294 12 C -0.041 4.041 13 C 0.341 3.659 14 O -0.424 6.424 15 C 0.020 3.980 16 H 0.115 0.885 17 C -0.195 4.195 18 C 0.050 3.950 19 N -0.328 5.328 20 C -0.351 4.351 21 H 0.094 0.906 22 C -0.203 4.203 23 N -0.569 5.569 24 Si 0.739 3.261 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.208 1.208 28 C -0.004 4.004 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.149 0.851 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.246 0.754 39 H 0.111 0.889 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.068 0.932 45 H 0.062 0.938 46 H 0.063 0.937 47 H 0.048 0.952 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.736 3.883 -21.536 21.896 hybrid contribution -1.371 -0.947 0.100 1.669 sum -2.106 2.936 -21.436 21.738 Atomic orbital electron populations 1.22177 0.96031 1.02068 1.01533 1.22040 0.94814 0.81593 1.04877 1.47855 1.63355 1.14520 1.05528 1.20191 0.78519 0.85529 0.85016 1.90659 1.45674 1.20373 1.86948 1.22113 1.04324 1.00788 0.92791 1.21228 1.02337 0.94557 0.76194 1.49081 1.09048 1.47032 1.21840 1.77017 1.19934 1.11281 1.01693 1.25951 0.81525 0.98236 0.99292 1.45971 1.13075 1.47405 1.22902 1.21791 0.86600 1.03519 0.92159 1.16813 0.84610 0.82751 0.81743 1.91108 1.37099 1.47581 1.66580 1.22250 0.96108 0.96863 0.82815 0.88464 1.23269 0.96730 1.00051 0.99476 1.21224 0.83808 0.92186 0.97788 1.44538 1.06262 1.12976 1.69055 1.18981 0.90527 0.95068 1.30545 0.90558 1.24752 0.96405 0.97758 1.01347 1.69955 1.14530 1.20720 1.51727 0.86170 0.80098 0.80815 0.78982 1.21662 1.21779 1.20800 1.21960 0.96182 0.89160 0.93087 0.92026 0.90831 0.94468 0.92605 0.85114 0.88277 0.88277 0.87879 0.87857 0.75375 0.88903 0.90441 0.90528 0.91909 0.91429 0.93217 0.93846 0.93750 0.95236 0.93332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 9.99 37.16 0.37 -2.32 16 2 C 0.09 1.54 5.04 -4.04 -0.02 1.52 16 3 N -0.58 -10.06 2.52 -163.67 -0.41 -10.47 16 4 C 0.52 8.61 7.63 -10.98 -0.08 8.53 16 5 O -0.56 -10.45 15.42 5.56 0.09 -10.37 16 6 C -0.16 -2.17 4.70 -27.88 -0.13 -2.30 16 7 C 0.18 2.33 5.68 -4.04 -0.02 2.30 16 8 N -0.45 -5.68 3.63 -65.12 -0.24 -5.92 16 9 N -0.28 -2.91 12.53 29.87 0.37 -2.53 16 10 C 0.25 1.64 12.61 -89.12 -1.12 0.51 16 11 N -0.56 -4.81 3.14 -130.11 -0.41 -5.22 16 12 C 0.10 0.46 11.08 59.85 0.66 1.12 16 13 C 0.64 8.52 8.60 -86.73 -0.75 7.77 16 14 O -0.55 -9.28 17.77 5.09 0.09 -9.19 16 15 C 0.12 2.27 3.61 -65.79 -0.24 2.03 16 16 H 0.10 1.77 7.12 -51.93 -0.37 1.40 16 17 C -0.16 -2.93 6.56 -24.90 -0.16 -3.09 16 18 C 0.17 3.96 4.30 -3.06 -0.01 3.95 16 19 N -0.60 -14.05 2.19 -170.07 -0.37 -14.43 16 20 C -0.22 -5.75 10.28 -15.06 -0.15 -5.91 16 21 H 0.08 1.94 7.83 -52.49 -0.41 1.53 16 22 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 23 N -0.92 -25.53 10.31 55.49 0.57 -24.96 16 24 Si 0.91 21.31 29.55 -169.99 -5.02 16.28 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 C 0.12 2.47 6.05 -2.53 -0.02 2.45 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.07 1.38 5.62 -51.93 -0.29 1.09 16 31 H 0.04 0.56 6.32 -51.93 -0.33 0.23 16 32 H 0.06 0.85 6.70 -51.93 -0.35 0.50 16 33 H 0.13 2.74 3.73 -51.93 -0.19 2.55 16 34 H 0.10 1.26 7.28 -51.92 -0.38 0.89 16 35 H 0.10 1.40 6.36 -51.93 -0.33 1.07 16 36 H 0.10 1.44 8.07 -51.93 -0.42 1.03 16 37 H 0.10 1.30 8.10 -51.93 -0.42 0.88 16 38 H 0.23 0.19 8.06 -52.49 -0.42 -0.23 16 39 H 0.09 0.06 8.07 -51.93 -0.42 -0.36 16 40 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.05 1.23 5.81 -51.93 -0.30 0.93 16 45 H 0.04 1.12 7.51 -51.93 -0.39 0.73 16 46 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 47 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 48 H 0.05 0.97 6.00 -51.93 -0.31 0.66 16 LS Contribution 379.74 15.07 5.72 5.72 Total: -1.00 -33.89 379.74 -8.39 -42.28 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -7.01 Total: 2.48 kcal Atomic # 6 Polarization: 18.08 SS G_CDS: -1.77 Total: 16.31 kcal Atomic # 7 Polarization: -63.04 SS G_CDS: -0.48 Total: -63.52 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: 0.18 Total: -19.56 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.89 -8.39 -42.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567940140.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.773 kcal (2) G-P(sol) polarization free energy of solvation -33.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds