Wall clock time and date at job start Tue Mar 31 2020 20:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46508 * 109.46799 * 2 1 4 4 C 1.34776 * 119.99797 * 275.12324 * 3 2 1 5 5 O 1.21274 * 119.99878 * 185.18330 * 4 3 2 6 6 C 1.50701 * 120.00073 * 5.19505 * 4 3 2 7 7 C 1.53000 * 109.47213 * 179.97438 * 6 4 3 8 8 N 1.46500 * 109.47258 * 179.97438 * 7 6 4 9 9 N 1.40171 * 126.34793 * 270.02217 * 8 7 6 10 10 C 1.29405 * 108.13826 * 179.97438 * 9 8 7 11 11 N 1.37359 * 108.82855 * 0.02562 * 10 9 8 12 12 C 1.46500 * 125.83180 * 180.02562 * 11 10 9 13 13 C 1.34815 * 108.33665 * 359.72973 * 11 10 9 14 14 O 1.21810 * 126.30784 * 180.28268 * 13 11 10 15 15 C 1.46498 * 119.99938 * 95.13064 * 3 2 1 16 16 H 1.09000 * 110.91317 * 190.38857 * 15 3 2 17 17 C 1.55153 * 111.00638 * 66.48689 * 15 3 2 18 18 C 1.54330 * 102.94139 * 277.42425 * 17 15 3 19 19 N 1.47024 * 107.26976 * 337.80807 * 18 17 15 20 20 C 1.36937 * 125.64472 * 178.97846 * 19 18 17 21 21 H 1.08000 * 119.99657 * 179.97438 * 20 19 18 22 22 C 1.38809 * 120.00216 * 359.97438 * 20 19 18 23 23 N 1.31620 * 120.00066 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00165 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46920 * 89.99457 * 24 22 20 26 26 H 1.48497 * 109.47308 * 210.00116 * 24 22 20 27 27 H 1.48502 * 109.47092 * 330.00300 * 24 22 20 28 28 C 1.47422 * 108.70277 * 358.93991 * 19 18 17 29 29 H 1.09005 * 109.46847 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47250 * 300.00001 * 1 2 3 31 31 H 1.09002 * 109.47024 * 60.00352 * 1 2 3 32 32 H 1.08995 * 109.47250 * 239.99999 * 2 1 3 33 33 H 1.09002 * 109.47024 * 119.99648 * 2 1 3 34 34 H 1.09008 * 109.46638 * 299.98991 * 6 4 3 35 35 H 1.08999 * 109.47577 * 59.98936 * 6 4 3 36 36 H 1.08998 * 109.46991 * 299.99754 * 7 6 4 37 37 H 1.09003 * 109.47204 * 59.99643 * 7 6 4 38 38 H 1.07993 * 125.58406 * 179.97438 * 10 9 8 39 39 H 1.09004 * 109.47193 * 359.97235 * 12 11 10 40 40 H 1.09000 * 109.47074 * 119.97074 * 12 11 10 41 41 H 1.08995 * 109.47186 * 239.97314 * 12 11 10 42 42 H 1.08996 * 110.72444 * 35.78523 * 17 15 3 43 43 H 1.08997 * 110.72332 * 159.06321 * 17 15 3 44 44 H 1.09004 * 109.87879 * 97.22018 * 18 17 15 45 45 H 1.08995 * 109.88352 * 218.38741 * 18 17 15 46 46 H 0.97000 * 119.99910 * 179.97438 * 23 22 20 47 47 H 1.08997 * 110.36299 * 265.28749 * 28 19 18 48 48 H 1.09003 * 110.36730 * 142.96544 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1446 2.0514 -1.1626 5 8 2.6364 3.1598 -1.1732 6 6 1.6744 1.4233 -2.4492 7 6 1.9306 2.3862 -3.6103 8 7 1.4740 1.7754 -4.8611 9 7 2.2374 0.9742 -5.7215 10 6 1.4880 0.6241 -6.7167 11 7 0.2398 1.1714 -6.5458 12 6 -0.8984 1.0118 -7.4543 13 6 0.2391 1.8751 -5.3958 14 8 -0.7022 2.4898 -4.9270 15 6 2.3694 2.0341 1.2636 16 1 2.5370 3.1011 1.1169 17 6 3.6074 1.3606 1.9124 18 6 2.9970 0.1459 2.6428 19 7 1.5746 0.4416 2.8682 20 6 0.6718 -0.3928 3.4715 21 1 -0.3554 -0.0814 3.5907 22 6 1.0770 -1.6388 3.9298 23 7 2.3288 -2.0185 3.7841 24 14 -0.1543 -2.7768 4.7535 25 1 -0.7954 -3.6381 3.7276 26 1 0.5468 -3.6287 5.7474 27 1 -1.1934 -1.9680 5.4401 28 6 1.2814 1.7856 2.3380 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.2187 0.4944 -2.6202 35 1 0.6072 1.2118 -2.3817 36 1 1.3861 3.3148 -3.4391 37 1 2.9977 2.5979 -3.6780 38 1 1.7941 0.0041 -7.5462 39 1 -0.6051 0.3868 -8.2978 40 1 -1.7245 0.5400 -6.9223 41 1 -1.2123 1.9899 -7.8187 42 1 4.3144 1.0361 1.1488 43 1 4.0867 2.0359 2.6212 44 1 3.0966 -0.7466 2.0249 45 1 3.5004 -0.0038 3.5979 46 1 2.6120 -2.8891 4.1047 47 1 1.3540 2.5302 3.1307 48 1 0.2898 1.8071 1.8858 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567940140.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:43 Heat of formation + Delta-G solvation = 36.431766 kcal Electronic energy + Delta-G solvation = -30471.492576 eV Core-core repulsion = 26371.599914 eV Total energy + Delta-G solvation = -4099.892662 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.39303 -41.44585 -39.22279 -38.40819 -36.66420 -36.17008 -34.39709 -33.61397 -31.90694 -30.96111 -30.47771 -29.13767 -28.26173 -26.47179 -25.81081 -24.11021 -23.32986 -22.35116 -21.92143 -21.75309 -19.88835 -18.92391 -18.83484 -18.03371 -17.84691 -17.32775 -16.98989 -16.70494 -16.64053 -16.36551 -15.71466 -15.64040 -15.34806 -14.99515 -14.72564 -14.39403 -14.35206 -13.98049 -13.84053 -13.69636 -13.67693 -13.46168 -13.36290 -13.21774 -12.91680 -12.86151 -12.84964 -12.63230 -12.55792 -12.23115 -12.02242 -11.99918 -11.83565 -11.51658 -11.46925 -11.34118 -11.07155 -10.74073 -10.63984 -9.67274 -9.63962 -8.81328 -7.79046 -5.12673 0.73400 1.11009 1.48963 1.50303 1.52853 1.55866 1.57742 1.98518 2.30287 2.52786 3.40478 3.43370 3.50968 3.68706 3.74291 3.90249 3.96403 4.03773 4.08955 4.13493 4.28410 4.31686 4.34956 4.48005 4.50547 4.56510 4.62939 4.66465 4.71538 4.77647 4.82026 4.84184 4.95822 4.97661 4.98315 5.06890 5.11044 5.22737 5.46048 5.52624 5.64441 5.70721 5.71330 5.83110 6.22864 6.47387 6.64662 6.94558 7.09339 7.15803 7.81119 8.46317 9.30869 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016303 B = 0.002818 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.108705 B = 9932.532809 C =10808.049723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.096 3.904 3 N -0.584 5.584 4 C 0.522 3.478 5 O -0.577 6.577 6 C -0.144 4.144 7 C 0.183 3.817 8 N -0.458 5.458 9 N -0.316 5.316 10 C 0.279 3.721 11 N -0.559 5.559 12 C 0.093 3.907 13 C 0.624 3.376 14 O -0.600 6.600 15 C 0.133 3.867 16 H 0.105 0.895 17 C -0.142 4.142 18 C 0.188 3.812 19 N -0.610 5.610 20 C -0.223 4.223 21 H 0.077 0.923 22 C -0.056 4.056 23 N -0.947 5.947 24 Si 0.966 3.034 25 H -0.286 1.286 26 H -0.300 1.300 27 H -0.276 1.276 28 C 0.123 3.877 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.113 0.887 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.107 0.893 38 H 0.291 0.709 39 H 0.143 0.857 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.081 0.919 44 H 0.028 0.972 45 H 0.006 0.994 46 H 0.245 0.755 47 H 0.035 0.965 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.493 2.519 -25.321 25.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.027 4.027 3 N -0.315 5.315 4 C 0.311 3.689 5 O -0.458 6.458 6 C -0.184 4.184 7 C 0.062 3.938 8 N -0.277 5.277 9 N -0.137 5.137 10 C -0.018 4.018 11 N -0.286 5.286 12 C -0.047 4.047 13 C 0.323 3.677 14 O -0.477 6.477 15 C 0.028 3.972 16 H 0.123 0.877 17 C -0.181 4.181 18 C 0.063 3.937 19 N -0.337 5.337 20 C -0.352 4.352 21 H 0.095 0.905 22 C -0.250 4.250 23 N -0.596 5.596 24 Si 0.796 3.204 25 H -0.213 1.213 26 H -0.227 1.227 27 H -0.201 1.201 28 C -0.003 4.003 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.115 0.885 34 H 0.131 0.869 35 H 0.114 0.886 36 H 0.105 0.895 37 H 0.125 0.875 38 H 0.306 0.694 39 H 0.161 0.839 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.100 0.900 44 H 0.046 0.954 45 H 0.024 0.976 46 H 0.054 0.946 47 H 0.053 0.947 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.988 3.295 -24.421 24.662 hybrid contribution -1.318 -0.753 0.860 1.745 sum -2.306 2.541 -23.561 23.810 Atomic orbital electron populations 1.22072 0.95646 1.02037 1.01190 1.21890 0.95008 0.81408 1.04349 1.47874 1.63555 1.14554 1.05494 1.20598 0.77729 0.85127 0.85439 1.90651 1.46579 1.21354 1.87254 1.21988 1.04011 1.01144 0.91295 1.21010 1.02199 0.93885 0.76739 1.49019 1.09257 1.47466 1.21961 1.77056 1.20674 1.12938 1.03040 1.27205 0.79721 0.95915 0.98959 1.46192 1.14731 1.46014 1.21672 1.22161 0.85511 1.04362 0.92665 1.17164 0.84258 0.83209 0.83097 1.91052 1.38633 1.49800 1.68229 1.22100 0.94914 0.97255 0.82891 0.87681 1.23137 0.96921 0.98472 0.99574 1.20936 0.83556 0.93286 0.95876 1.44650 1.06276 1.13925 1.68830 1.19220 0.90965 0.95352 1.29651 0.90492 1.25401 0.97808 0.99182 1.02593 1.70143 1.15947 1.20593 1.52923 0.85258 0.78276 0.79005 0.77857 1.21292 1.22678 1.20113 1.22044 0.96965 0.87607 0.93676 0.91896 0.93034 0.92809 0.90215 0.88483 0.86882 0.88554 0.89549 0.87516 0.69410 0.83876 0.91139 0.90913 0.90915 0.90037 0.95422 0.97561 0.94555 0.94704 0.93173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.99 9.99 71.98 0.72 -4.27 16 2 C 0.10 3.25 5.04 86.38 0.44 3.68 16 3 N -0.58 -19.69 2.52 -790.14 -1.99 -21.68 16 4 C 0.52 16.75 7.63 87.66 0.67 17.42 16 5 O -0.58 -21.20 15.42 -3.01 -0.05 -21.25 16 6 C -0.14 -3.76 4.70 29.85 0.14 -3.62 16 7 C 0.18 4.73 5.68 86.38 0.49 5.22 16 8 N -0.46 -11.12 3.63 -478.02 -1.73 -12.85 16 9 N -0.32 -5.81 12.53 -59.42 -0.74 -6.55 16 10 C 0.28 2.55 12.61 179.82 2.27 4.82 16 11 N -0.56 -8.06 3.14 -683.70 -2.15 -10.21 16 12 C 0.09 0.56 11.08 127.77 1.42 1.98 16 13 C 0.62 16.12 8.60 178.99 1.54 17.66 16 14 O -0.60 -20.60 17.77 -4.70 -0.08 -20.68 16 15 C 0.13 4.78 3.61 46.38 0.17 4.94 16 16 H 0.11 3.69 7.12 -2.39 -0.02 3.67 16 17 C -0.14 -5.25 6.56 31.78 0.21 -5.04 16 18 C 0.19 8.75 4.30 86.73 0.37 9.12 16 19 N -0.61 -28.88 2.19 -691.98 -1.52 -30.40 16 20 C -0.22 -11.61 10.28 84.03 0.86 -10.75 16 21 H 0.08 3.93 7.83 -2.91 -0.02 3.90 16 22 C -0.06 -3.04 5.49 84.86 0.47 -2.57 16 23 N -0.95 -53.83 10.31 21.65 0.22 -53.61 16 24 Si 0.97 44.26 29.55 68.60 2.03 46.28 16 25 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 26 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 27 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 28 C 0.12 4.91 6.05 86.86 0.53 5.43 16 29 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 30 H 0.05 1.92 5.62 -2.39 -0.01 1.91 16 31 H 0.05 1.57 6.32 -2.39 -0.02 1.56 16 32 H 0.08 2.31 6.70 -2.39 -0.02 2.29 16 33 H 0.10 4.10 3.73 -2.39 -0.01 4.09 16 34 H 0.11 2.66 7.28 -2.38 -0.02 2.64 16 35 H 0.10 2.62 6.36 -2.39 -0.02 2.60 16 36 H 0.09 2.48 8.07 -2.39 -0.02 2.47 16 37 H 0.11 2.63 8.10 -2.39 -0.02 2.61 16 38 H 0.29 -1.41 8.06 -2.91 -0.02 -1.43 16 39 H 0.14 -0.59 8.07 -2.39 -0.02 -0.61 16 40 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 43 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 44 H 0.03 1.42 5.81 -2.39 -0.01 1.40 16 45 H 0.01 0.33 7.51 -2.39 -0.02 0.31 16 46 H 0.24 13.76 8.31 -92.71 -0.77 12.99 16 47 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.05 2.00 6.00 -2.39 -0.01 1.98 16 Total: -1.00 -77.04 379.74 5.25 -71.79 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: 0.98 Total: 15.13 kcal Atomic # 6 Polarization: 33.75 SS G_CDS: 10.28 Total: 44.03 kcal Atomic # 7 Polarization: -127.39 SS G_CDS: -7.91 Total: -135.30 kcal Atomic # 8 Polarization: -41.80 SS G_CDS: -0.13 Total: -41.93 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Total: -77.04 5.25 -71.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567940140.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.224 kcal (2) G-P(sol) polarization free energy of solvation -77.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds