Wall clock time and date at job start Tue Mar 31 2020 20:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.46971 * 2 1 4 4 C 1.34780 * 119.99944 * 90.00240 * 3 2 1 5 5 O 1.21272 * 119.99812 * 180.02562 * 4 3 2 6 6 C 1.50699 * 119.99820 * 359.97438 * 4 3 2 7 7 C 1.53007 * 109.46748 * 180.02562 * 6 4 3 8 8 N 1.46501 * 109.46755 * 180.02562 * 7 6 4 9 9 N 1.40163 * 126.35238 * 269.97483 * 8 7 6 10 10 C 1.29400 * 108.14602 * 180.02562 * 9 8 7 11 11 N 1.37362 * 108.82371 * 0.02562 * 10 9 8 12 12 C 1.46503 * 125.83123 * 180.02562 * 11 10 9 13 13 C 1.34810 * 108.33692 * 359.97438 * 11 10 9 14 14 O 1.21817 * 126.30144 * 180.26248 * 13 11 10 15 15 C 1.46501 * 119.99839 * 269.99545 * 3 2 1 16 16 H 1.08996 * 110.64218 * 1.68987 * 15 3 2 17 17 C 1.55158 * 110.71819 * 125.02630 * 15 3 2 18 18 C 1.54906 * 101.58166 * 153.86384 * 17 15 3 19 19 N 1.47425 * 104.83241 * 322.99303 * 18 17 15 20 20 C 1.36944 * 125.64648 * 204.09409 * 19 18 17 21 21 H 1.08000 * 119.99918 * 180.02562 * 20 19 18 22 22 C 1.38803 * 119.99884 * 0.03728 * 20 19 18 23 23 N 1.31617 * 120.00594 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99756 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47243 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47019 * 119.99922 * 24 22 20 27 27 H 1.48498 * 109.47342 * 240.00016 * 24 22 20 28 28 C 1.47024 * 108.70538 * 24.12605 * 19 18 17 29 29 H 1.09001 * 109.47458 * 300.00462 * 1 2 3 30 30 H 1.09006 * 109.46966 * 60.00363 * 1 2 3 31 31 H 1.09001 * 109.47141 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47106 * 239.99951 * 2 1 3 33 33 H 1.09006 * 109.46966 * 119.99637 * 2 1 3 34 34 H 1.08997 * 109.46959 * 60.01020 * 6 4 3 35 35 H 1.08998 * 109.47262 * 300.00417 * 6 4 3 36 36 H 1.08997 * 109.46984 * 60.00513 * 7 6 4 37 37 H 1.08998 * 109.47153 * 299.99961 * 7 6 4 38 38 H 1.07998 * 125.59270 * 179.97438 * 10 9 8 39 39 H 1.09003 * 109.47229 * 269.94398 * 12 11 10 40 40 H 1.09007 * 109.46869 * 29.94258 * 12 11 10 41 41 H 1.08994 * 109.47257 * 149.94081 * 12 11 10 42 42 H 1.08994 * 111.00408 * 271.94075 * 17 15 3 43 43 H 1.08998 * 111.00352 * 35.78856 * 17 15 3 44 44 H 1.08997 * 110.36793 * 204.14979 * 18 17 15 45 45 H 1.09005 * 110.46160 * 81.87486 * 18 17 15 46 46 H 0.96998 * 120.00615 * 179.97438 * 23 22 20 47 47 H 1.08998 * 109.88143 * 239.52966 * 28 19 18 48 48 H 1.08995 * 110.01243 * 118.43514 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2430 2.0166 1.1672 5 8 2.6467 3.1601 1.1672 6 6 1.9913 1.3063 2.4723 7 6 2.3223 2.2439 3.6352 8 7 2.0782 1.5532 4.9040 9 7 0.8755 1.5378 5.6236 10 6 1.0520 0.8240 6.6883 11 7 2.3448 0.3599 6.7014 12 6 2.9420 -0.4858 7.7381 13 6 2.9699 0.8146 5.5970 14 8 4.1255 0.5950 5.2803 15 6 2.2625 2.0718 -1.2688 16 1 2.0040 1.4305 -2.1113 17 6 1.4740 3.4068 -1.3278 18 6 2.3404 4.2367 -2.3077 19 7 3.7310 3.8644 -1.9900 20 6 4.8387 4.6309 -2.2370 21 1 5.8186 4.2669 -1.9658 22 6 4.7018 5.8757 -2.8356 23 7 3.5075 6.3197 -3.1655 24 14 6.2128 6.9210 -3.1731 25 1 7.4264 6.2001 -2.7119 26 1 6.3176 7.1833 -4.6310 27 1 6.0956 8.2101 -2.4453 28 6 3.7319 2.5337 -1.3649 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 2.6213 0.4187 2.5302 35 1 0.9433 1.0125 2.5298 36 1 1.6920 3.1313 3.5772 37 1 3.3702 2.5381 3.5779 38 1 0.3056 0.6262 7.4434 39 1 3.3870 0.1437 8.5088 40 1 2.1706 -1.1144 8.1830 41 1 3.7125 -1.1157 7.2938 42 1 0.4720 3.2513 -1.7276 43 1 1.4323 3.8796 -0.3466 44 1 2.1855 5.3027 -2.1415 45 1 2.1042 3.9761 -3.3395 46 1 3.4118 7.1898 -3.5835 47 1 4.1679 2.5929 -0.3677 48 1 4.3010 1.8343 -1.9773 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567940141.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:51 Heat of formation + Delta-G solvation = 55.893186 kcal Electronic energy + Delta-G solvation = -30121.916964 eV Core-core repulsion = 26022.868213 eV Total energy + Delta-G solvation = -4099.048751 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.64505 -40.10252 -37.45047 -36.95828 -35.77345 -35.47104 -33.03588 -32.20374 -30.26887 -30.11523 -28.88046 -27.85137 -26.94534 -25.09399 -24.16093 -23.27917 -22.52161 -21.39771 -20.63346 -20.03826 -18.52234 -17.82337 -17.08724 -16.86652 -16.68774 -16.33417 -15.87847 -15.63602 -15.25496 -14.87767 -14.55964 -14.14061 -13.98475 -13.79983 -13.70705 -13.42961 -13.17401 -13.04533 -12.91955 -12.78789 -12.48319 -12.15434 -12.03483 -11.92693 -11.66171 -11.49984 -11.37528 -11.08217 -10.89065 -10.76780 -10.67652 -10.46616 -10.41444 -10.33647 -9.97506 -9.71048 -9.44301 -9.09254 -8.77412 -8.51366 -8.26897 -6.65449 -5.50403 -2.90434 1.50558 1.67290 2.45057 2.81289 2.90071 3.22785 3.49614 3.54850 3.57686 4.14183 4.38568 4.61071 4.64138 4.67579 4.74445 4.79670 4.85078 4.98164 5.08192 5.13479 5.28589 5.32780 5.44938 5.51040 5.60650 5.62098 5.66167 5.69652 5.69986 5.76616 5.88335 5.97006 5.99471 6.10411 6.27253 6.37154 6.63377 6.67871 6.73253 6.86331 7.27744 7.36840 7.60660 7.72306 7.78451 7.82574 8.00936 8.48143 8.53140 9.37226 9.98425 10.63558 11.53747 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014608 B = 0.002770 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.344112 B =10107.164893 C =11239.890538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.104 3.896 3 N -0.604 5.604 4 C 0.514 3.486 5 O -0.506 6.506 6 C -0.157 4.157 7 C 0.175 3.825 8 N -0.448 5.448 9 N -0.278 5.278 10 C 0.248 3.752 11 N -0.564 5.564 12 C 0.099 3.901 13 C 0.641 3.359 14 O -0.550 6.550 15 C 0.135 3.865 16 H 0.087 0.913 17 C -0.155 4.155 18 C 0.158 3.842 19 N -0.596 5.596 20 C -0.211 4.211 21 H 0.076 0.924 22 C -0.015 4.015 23 N -0.924 5.924 24 Si 0.913 3.087 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.291 1.291 28 C 0.133 3.867 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.230 0.770 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.051 0.949 43 H 0.083 0.917 44 H 0.106 0.894 45 H 0.009 0.991 46 H 0.249 0.751 47 H 0.036 0.964 48 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.806 -18.652 20.596 29.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.019 4.019 3 N -0.338 5.338 4 C 0.300 3.700 5 O -0.381 6.381 6 C -0.198 4.198 7 C 0.054 3.946 8 N -0.269 5.269 9 N -0.099 5.099 10 C -0.051 4.051 11 N -0.294 5.294 12 C -0.043 4.043 13 C 0.340 3.660 14 O -0.423 6.423 15 C 0.032 3.968 16 H 0.105 0.895 17 C -0.194 4.194 18 C 0.033 3.967 19 N -0.322 5.322 20 C -0.340 4.340 21 H 0.093 0.907 22 C -0.209 4.209 23 N -0.574 5.574 24 Si 0.744 3.256 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.218 1.218 28 C 0.006 3.994 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.112 0.888 35 H 0.115 0.885 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.246 0.754 39 H 0.091 0.909 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.069 0.931 43 H 0.101 0.899 44 H 0.124 0.876 45 H 0.026 0.974 46 H 0.060 0.940 47 H 0.054 0.946 48 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -10.295 -17.394 19.665 28.201 hybrid contribution 1.063 -0.209 0.249 1.111 sum -9.232 -17.604 19.915 28.137 Atomic orbital electron populations 1.22224 0.95973 1.01876 1.02820 1.21559 0.94403 0.82934 1.03032 1.47996 1.65968 1.13700 1.06146 1.20131 0.78312 0.86941 0.84643 1.90839 1.43337 1.17003 1.86914 1.22095 1.04245 1.00455 0.93043 1.21262 1.04410 0.93494 0.75399 1.49093 1.07901 1.48072 1.21873 1.77014 1.06822 1.20938 1.05096 1.25925 0.86973 0.94327 0.97869 1.45965 1.12180 1.48151 1.23091 1.21810 0.99709 0.93861 0.88929 1.16835 0.85672 0.81967 0.81508 1.91119 1.13727 1.64532 1.72951 1.22201 0.97518 0.93889 0.83147 0.89498 1.23427 0.97395 0.95592 1.03007 1.21836 0.81709 1.00858 0.92331 1.44300 1.03386 1.14283 1.70201 1.19108 0.85780 0.97053 1.32043 0.90659 1.24751 0.96901 0.97721 1.01567 1.69807 1.19931 1.19619 1.48008 0.86004 0.81837 0.80377 0.77362 1.20617 1.21926 1.21838 1.21479 0.92669 0.88422 0.96836 0.92516 0.91904 0.91817 0.90243 0.90791 0.88825 0.88479 0.87632 0.87597 0.75402 0.90907 0.89368 0.89408 0.93058 0.89870 0.87587 0.97353 0.93976 0.94602 0.96707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.54 10.24 37.16 0.38 -1.16 16 2 C 0.10 1.09 5.91 -4.04 -0.02 1.07 16 3 N -0.60 -9.11 2.54 -164.02 -0.42 -9.53 16 4 C 0.51 8.35 6.78 -10.98 -0.07 8.28 16 5 O -0.51 -10.64 12.33 5.56 0.07 -10.57 16 6 C -0.16 -1.94 4.58 -27.88 -0.13 -2.07 16 7 C 0.18 2.33 5.68 -4.04 -0.02 2.31 16 8 N -0.45 -5.55 3.63 -65.12 -0.24 -5.79 16 9 N -0.28 -2.78 12.53 29.87 0.37 -2.40 16 10 C 0.25 1.51 12.66 -89.12 -1.13 0.38 16 11 N -0.56 -4.55 3.14 -130.10 -0.41 -4.96 16 12 C 0.10 0.40 11.05 59.85 0.66 1.06 16 13 C 0.64 8.30 8.60 -86.74 -0.75 7.55 16 14 O -0.55 -9.17 17.71 5.08 0.09 -9.08 16 15 C 0.14 2.51 3.44 -66.09 -0.23 2.28 16 16 H 0.09 1.44 7.88 -51.93 -0.41 1.03 16 17 C -0.15 -3.24 6.40 -24.58 -0.16 -3.40 16 18 C 0.16 4.11 5.89 -2.53 -0.01 4.10 16 19 N -0.60 -16.51 3.39 -170.08 -0.58 -17.09 16 20 C -0.21 -6.33 10.27 -15.06 -0.15 -6.49 16 21 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 22 C -0.01 -0.44 5.49 -17.43 -0.10 -0.53 16 23 N -0.92 -28.41 10.09 55.49 0.56 -27.85 16 24 Si 0.91 23.42 29.55 -169.99 -5.02 18.40 16 25 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 27 H -0.29 -7.51 7.11 56.52 0.40 -7.10 16 28 C 0.13 3.07 6.49 -3.06 -0.02 3.05 16 29 H 0.06 0.53 7.22 -51.93 -0.37 0.15 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.76 7.96 -51.93 -0.41 0.35 16 33 H 0.07 0.66 6.44 -51.93 -0.33 0.33 16 34 H 0.09 1.11 7.40 -51.93 -0.38 0.73 16 35 H 0.10 1.03 7.18 -51.93 -0.37 0.66 16 36 H 0.11 1.41 8.10 -51.93 -0.42 0.99 16 37 H 0.11 1.60 8.07 -51.93 -0.42 1.18 16 38 H 0.23 0.08 8.06 -52.49 -0.42 -0.34 16 39 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 40 H 0.09 0.04 8.14 -51.93 -0.42 -0.38 16 41 H 0.09 0.46 8.08 -51.93 -0.42 0.04 16 42 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.08 1.89 5.81 -51.93 -0.30 1.59 16 44 H 0.11 3.13 5.87 -51.93 -0.30 2.83 16 45 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 46 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 47 H 0.04 0.89 6.28 -51.93 -0.33 0.56 16 48 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 387.18 15.07 5.83 5.83 Total: -1.00 -39.62 387.18 -8.90 -48.52 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -7.41 Total: -1.91 kcal Atomic # 6 Polarization: 18.19 SS G_CDS: -1.75 Total: 16.43 kcal Atomic # 7 Polarization: -66.92 SS G_CDS: -0.70 Total: -67.62 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: 0.16 Total: -19.65 kcal Atomic # 14 Polarization: 23.42 SS G_CDS: -5.02 Total: 18.40 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -39.62 -8.90 -48.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567940141.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.409 kcal (2) G-P(sol) polarization free energy of solvation -39.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds