Wall clock time and date at job start Tue Mar 31 2020 20:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.46971 * 2 1 4 4 C 1.34780 * 119.99944 * 90.00240 * 3 2 1 5 5 O 1.21272 * 119.99812 * 180.02562 * 4 3 2 6 6 C 1.50699 * 119.99820 * 359.97438 * 4 3 2 7 7 C 1.53007 * 109.46748 * 180.02562 * 6 4 3 8 8 N 1.46501 * 109.46755 * 180.02562 * 7 6 4 9 9 N 1.40163 * 126.35238 * 269.97483 * 8 7 6 10 10 C 1.29400 * 108.14602 * 180.02562 * 9 8 7 11 11 N 1.37362 * 108.82371 * 0.02562 * 10 9 8 12 12 C 1.46503 * 125.83123 * 180.02562 * 11 10 9 13 13 C 1.34810 * 108.33692 * 359.97438 * 11 10 9 14 14 O 1.21817 * 126.30144 * 180.26248 * 13 11 10 15 15 C 1.46501 * 119.99839 * 269.99545 * 3 2 1 16 16 H 1.08996 * 110.64218 * 1.68987 * 15 3 2 17 17 C 1.55158 * 110.71819 * 125.02630 * 15 3 2 18 18 C 1.54906 * 101.58166 * 153.86384 * 17 15 3 19 19 N 1.47425 * 104.83241 * 322.99303 * 18 17 15 20 20 C 1.36944 * 125.64648 * 204.09409 * 19 18 17 21 21 H 1.08000 * 119.99918 * 180.02562 * 20 19 18 22 22 C 1.38803 * 119.99884 * 0.03728 * 20 19 18 23 23 N 1.31617 * 120.00594 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99756 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47243 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47019 * 119.99922 * 24 22 20 27 27 H 1.48498 * 109.47342 * 240.00016 * 24 22 20 28 28 C 1.47024 * 108.70538 * 24.12605 * 19 18 17 29 29 H 1.09001 * 109.47458 * 300.00462 * 1 2 3 30 30 H 1.09006 * 109.46966 * 60.00363 * 1 2 3 31 31 H 1.09001 * 109.47141 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47106 * 239.99951 * 2 1 3 33 33 H 1.09006 * 109.46966 * 119.99637 * 2 1 3 34 34 H 1.08997 * 109.46959 * 60.01020 * 6 4 3 35 35 H 1.08998 * 109.47262 * 300.00417 * 6 4 3 36 36 H 1.08997 * 109.46984 * 60.00513 * 7 6 4 37 37 H 1.08998 * 109.47153 * 299.99961 * 7 6 4 38 38 H 1.07998 * 125.59270 * 179.97438 * 10 9 8 39 39 H 1.09003 * 109.47229 * 269.94398 * 12 11 10 40 40 H 1.09007 * 109.46869 * 29.94258 * 12 11 10 41 41 H 1.08994 * 109.47257 * 149.94081 * 12 11 10 42 42 H 1.08994 * 111.00408 * 271.94075 * 17 15 3 43 43 H 1.08998 * 111.00352 * 35.78856 * 17 15 3 44 44 H 1.08997 * 110.36793 * 204.14979 * 18 17 15 45 45 H 1.09005 * 110.46160 * 81.87486 * 18 17 15 46 46 H 0.96998 * 120.00615 * 179.97438 * 23 22 20 47 47 H 1.08998 * 109.88143 * 239.52966 * 28 19 18 48 48 H 1.08995 * 110.01243 * 118.43514 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2430 2.0166 1.1672 5 8 2.6467 3.1601 1.1672 6 6 1.9913 1.3063 2.4723 7 6 2.3223 2.2439 3.6352 8 7 2.0782 1.5532 4.9040 9 7 0.8755 1.5378 5.6236 10 6 1.0520 0.8240 6.6883 11 7 2.3448 0.3599 6.7014 12 6 2.9420 -0.4858 7.7381 13 6 2.9699 0.8146 5.5970 14 8 4.1255 0.5950 5.2803 15 6 2.2625 2.0718 -1.2688 16 1 2.0040 1.4305 -2.1113 17 6 1.4740 3.4068 -1.3278 18 6 2.3404 4.2367 -2.3077 19 7 3.7310 3.8644 -1.9900 20 6 4.8387 4.6309 -2.2370 21 1 5.8186 4.2669 -1.9658 22 6 4.7018 5.8757 -2.8356 23 7 3.5075 6.3197 -3.1655 24 14 6.2128 6.9210 -3.1731 25 1 7.4264 6.2001 -2.7119 26 1 6.3176 7.1833 -4.6310 27 1 6.0956 8.2101 -2.4453 28 6 3.7319 2.5337 -1.3649 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 2.6213 0.4187 2.5302 35 1 0.9433 1.0125 2.5298 36 1 1.6920 3.1313 3.5772 37 1 3.3702 2.5381 3.5779 38 1 0.3056 0.6262 7.4434 39 1 3.3870 0.1437 8.5088 40 1 2.1706 -1.1144 8.1830 41 1 3.7125 -1.1157 7.2938 42 1 0.4720 3.2513 -1.7276 43 1 1.4323 3.8796 -0.3466 44 1 2.1855 5.3027 -2.1415 45 1 2.1042 3.9761 -3.3395 46 1 3.4118 7.1898 -3.5835 47 1 4.1679 2.5929 -0.3677 48 1 4.3010 1.8343 -1.9773 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567940141.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:49 Heat of formation + Delta-G solvation = 28.970087 kcal Electronic energy + Delta-G solvation = -30123.084437 eV Core-core repulsion = 26022.868213 eV Total energy + Delta-G solvation = -4100.216224 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -43.40620 -41.45488 -38.65891 -38.42144 -36.82871 -36.63426 -34.46931 -33.63869 -31.66404 -31.07073 -30.61835 -28.87789 -28.17724 -26.65518 -25.64386 -24.17068 -23.32429 -22.44932 -22.08067 -21.91843 -19.78932 -19.00482 -18.61936 -18.03074 -17.70899 -17.23868 -17.09416 -16.71241 -16.64898 -16.33514 -15.95489 -15.54946 -15.24949 -14.76898 -14.67398 -14.63226 -14.38553 -14.28831 -13.91001 -13.87046 -13.49528 -13.44467 -13.24444 -13.18674 -13.01021 -12.88136 -12.76974 -12.68228 -12.54160 -12.28695 -12.15831 -12.00446 -11.95113 -11.82715 -11.40494 -11.35905 -11.06462 -10.75842 -10.51959 -9.66682 -9.62106 -8.86783 -7.77663 -5.21317 0.70893 1.10535 1.41807 1.44746 1.54468 1.54895 1.62913 1.94956 2.28825 2.49165 3.30607 3.42139 3.51471 3.70975 3.75084 3.90519 3.95196 4.02721 4.10832 4.13344 4.26967 4.27814 4.31668 4.42533 4.53970 4.56118 4.64888 4.67470 4.70411 4.73648 4.82641 4.87657 4.95243 4.96748 5.02903 5.03630 5.09572 5.14141 5.41240 5.42284 5.63665 5.70874 5.77157 5.80596 6.30639 6.45634 6.64061 6.93811 7.10469 7.23307 7.77971 8.41903 9.24314 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014608 B = 0.002770 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.344112 B =10107.164893 C =11239.890538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.097 3.903 3 N -0.600 5.600 4 C 0.509 3.491 5 O -0.563 6.563 6 C -0.134 4.134 7 C 0.180 3.820 8 N -0.457 5.457 9 N -0.315 5.315 10 C 0.281 3.719 11 N -0.558 5.558 12 C 0.091 3.909 13 C 0.624 3.376 14 O -0.602 6.602 15 C 0.154 3.846 16 H 0.118 0.882 17 C -0.139 4.139 18 C 0.161 3.839 19 N -0.618 5.618 20 C -0.236 4.236 21 H 0.072 0.928 22 C -0.069 4.069 23 N -0.949 5.949 24 Si 0.982 3.018 25 H -0.270 1.270 26 H -0.285 1.285 27 H -0.292 1.292 28 C 0.130 3.870 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.124 0.876 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.292 0.708 39 H 0.082 0.918 40 H 0.136 0.864 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.062 0.938 44 H 0.066 0.934 45 H -0.004 1.004 46 H 0.247 0.753 47 H 0.014 0.986 48 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.744 -21.566 22.496 33.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.024 4.024 3 N -0.332 5.332 4 C 0.297 3.703 5 O -0.441 6.441 6 C -0.175 4.175 7 C 0.058 3.942 8 N -0.276 5.276 9 N -0.136 5.136 10 C -0.017 4.017 11 N -0.285 5.285 12 C -0.049 4.049 13 C 0.323 3.677 14 O -0.479 6.479 15 C 0.049 3.951 16 H 0.136 0.864 17 C -0.178 4.178 18 C 0.036 3.964 19 N -0.344 5.344 20 C -0.365 4.365 21 H 0.090 0.910 22 C -0.261 4.261 23 N -0.599 5.599 24 Si 0.810 3.190 25 H -0.195 1.195 26 H -0.212 1.212 27 H -0.219 1.219 28 C 0.003 3.997 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.121 0.879 35 H 0.142 0.858 36 H 0.116 0.884 37 H 0.093 0.907 38 H 0.307 0.693 39 H 0.100 0.900 40 H 0.154 0.846 41 H 0.089 0.911 42 H 0.101 0.899 43 H 0.081 0.919 44 H 0.084 0.916 45 H 0.014 0.986 46 H 0.057 0.943 47 H 0.032 0.968 48 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -12.284 -20.392 21.615 32.155 hybrid contribution 1.633 0.637 -0.203 1.764 sum -10.652 -19.755 21.412 31.019 Atomic orbital electron populations 1.22176 0.94395 1.03512 1.02215 1.21938 0.95609 0.80037 1.04850 1.48053 1.65373 1.15352 1.04434 1.20807 0.77048 0.86391 0.86084 1.90824 1.45850 1.19696 1.87772 1.21922 1.05828 0.99615 0.90128 1.20951 1.02427 0.93907 0.76890 1.48976 1.09026 1.47880 1.21726 1.77057 1.05710 1.23928 1.06934 1.27194 0.86572 0.90813 0.97077 1.46177 1.12651 1.47587 1.22095 1.22181 1.01028 0.93865 0.87798 1.17164 0.85300 0.82372 0.82899 1.91062 1.15912 1.66450 1.74498 1.21911 0.93576 0.93631 0.85934 0.86387 1.23176 0.98262 0.95911 1.00439 1.21601 0.82333 0.99516 0.92970 1.44594 1.03445 1.15985 1.70410 1.19426 0.86628 0.98046 1.32399 0.91033 1.25639 1.00038 0.98831 1.01610 1.70069 1.21777 1.19689 1.48342 0.84957 0.78604 0.78221 0.77229 1.19505 1.21153 1.21857 1.21617 0.96150 0.86759 0.95143 0.92784 0.92877 0.89023 0.88702 0.88819 0.87922 0.85832 0.88366 0.90701 0.69308 0.89971 0.84618 0.91055 0.89850 0.91947 0.91634 0.98616 0.94316 0.96805 0.96036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 10.24 71.98 0.74 -1.63 16 2 C 0.10 1.71 5.91 86.38 0.51 2.22 16 3 N -0.60 -17.31 2.54 -791.24 -2.01 -19.32 16 4 C 0.51 16.69 6.78 87.66 0.59 17.29 16 5 O -0.56 -24.96 12.33 -3.01 -0.04 -25.00 16 6 C -0.13 -3.25 4.58 29.85 0.14 -3.11 16 7 C 0.18 5.04 5.68 86.38 0.49 5.53 16 8 N -0.46 -11.24 3.63 -478.01 -1.73 -12.97 16 9 N -0.32 -5.65 12.53 -59.42 -0.74 -6.39 16 10 C 0.28 2.33 12.66 179.82 2.28 4.60 16 11 N -0.56 -7.65 3.14 -683.68 -2.15 -9.79 16 12 C 0.09 0.47 11.05 127.77 1.41 1.88 16 13 C 0.62 16.08 8.60 178.99 1.54 17.62 16 14 O -0.60 -20.94 17.71 -4.72 -0.08 -21.02 16 15 C 0.15 5.58 3.44 46.18 0.16 5.74 16 16 H 0.12 3.60 7.88 -2.39 -0.02 3.58 16 17 C -0.14 -5.85 6.40 31.99 0.20 -5.64 16 18 C 0.16 8.73 5.89 86.85 0.51 9.24 16 19 N -0.62 -35.62 3.39 -692.00 -2.35 -37.97 16 20 C -0.24 -14.68 10.27 84.03 0.86 -13.82 16 21 H 0.07 4.36 7.83 -2.91 -0.02 4.34 16 22 C -0.07 -4.25 5.49 84.86 0.47 -3.79 16 23 N -0.95 -60.55 10.09 21.65 0.22 -60.33 16 24 Si 0.98 49.46 29.55 68.60 2.03 51.49 16 25 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 26 H -0.28 -13.95 7.11 99.48 0.71 -13.24 16 27 H -0.29 -14.62 7.11 99.48 0.71 -13.92 16 28 C 0.13 6.14 6.49 86.73 0.56 6.70 16 29 H 0.05 0.82 7.22 -2.39 -0.02 0.80 16 30 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.09 1.45 7.96 -2.39 -0.02 1.43 16 33 H 0.09 1.34 6.44 -2.38 -0.02 1.32 16 34 H 0.10 2.33 7.40 -2.39 -0.02 2.31 16 35 H 0.12 2.35 7.18 -2.39 -0.02 2.33 16 36 H 0.10 2.81 8.10 -2.39 -0.02 2.80 16 37 H 0.07 2.51 8.07 -2.39 -0.02 2.49 16 38 H 0.29 -1.70 8.06 -2.91 -0.02 -1.72 16 39 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 40 H 0.14 -0.57 8.14 -2.38 -0.02 -0.59 16 41 H 0.07 0.65 8.08 -2.39 -0.02 0.63 16 42 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 43 H 0.06 2.93 5.81 -2.39 -0.01 2.92 16 44 H 0.07 4.09 5.87 -2.39 -0.01 4.07 16 45 H 0.00 -0.23 8.14 -2.38 -0.02 -0.25 16 46 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 47 H 0.01 0.72 6.28 -2.39 -0.02 0.71 16 48 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -95.08 387.18 4.57 -90.51 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: 0.96 Total: 7.97 kcal Atomic # 6 Polarization: 32.37 SS G_CDS: 10.46 Total: 42.84 kcal Atomic # 7 Polarization: -138.02 SS G_CDS: -8.76 Total: -146.78 kcal Atomic # 8 Polarization: -45.90 SS G_CDS: -0.12 Total: -46.03 kcal Atomic # 14 Polarization: 49.46 SS G_CDS: 2.03 Total: 51.49 kcal Total: -95.08 4.57 -90.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567940141.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.481 kcal (2) G-P(sol) polarization free energy of solvation -95.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds