Wall clock time and date at job start Tue Mar 31 2020 21:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.37358 * 125.83296 * 2 1 4 4 N 1.29404 * 108.83252 * 180.02562 * 3 2 1 5 5 N 1.40177 * 108.13718 * 0.02562 * 4 3 2 6 6 C 1.46496 * 126.34683 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.47161 * 270.02473 * 6 5 4 8 8 O 1.21287 * 120.00105 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00294 * 180.02562 * 7 6 5 10 10 C 1.46927 * 120.62697 * 359.72282 * 9 7 6 11 11 C 1.53631 * 108.54311 * 126.36889 * 10 9 7 12 12 C 1.53036 * 109.23951 * 54.85275 * 11 10 9 13 13 C 1.53006 * 109.45641 * 178.48957 * 12 11 10 14 14 C 1.52999 * 109.47319 * 295.07161 * 13 12 11 15 15 N 1.46496 * 109.47148 * 179.97438 * 14 13 12 16 16 C 1.36941 * 120.00061 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99383 * 359.97438 * 16 15 14 18 18 C 1.38812 * 120.00121 * 180.02562 * 16 15 14 19 19 N 1.31622 * 119.99811 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99959 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47145 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47020 * 119.99864 * 20 18 16 23 23 H 1.48501 * 109.46779 * 239.99556 * 20 18 16 24 24 C 1.53038 * 109.54072 * 298.50881 * 12 11 10 25 25 C 1.46928 * 120.63275 * 179.97438 * 9 7 6 26 26 C 1.34819 * 125.83634 * 180.02562 * 2 1 3 27 27 O 1.21815 * 126.29642 * 359.94775 * 26 2 1 28 28 H 1.09005 * 109.47424 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47305 * 119.97424 * 1 2 3 30 30 H 1.08998 * 109.47653 * 239.97059 * 1 2 3 31 31 H 1.08000 * 125.58808 * 0.04623 * 3 2 1 32 32 H 1.09002 * 109.47394 * 30.02222 * 6 5 4 33 33 H 1.09004 * 109.46823 * 150.02630 * 6 5 4 34 34 H 1.09003 * 109.58246 * 246.19992 * 10 9 7 35 35 H 1.09000 * 109.59024 * 6.62369 * 10 9 7 36 36 H 1.08997 * 109.63034 * 294.85972 * 11 10 9 37 37 H 1.09000 * 109.45516 * 174.73931 * 11 10 9 38 38 H 1.08996 * 109.45229 * 58.53108 * 12 11 10 39 39 H 1.09005 * 109.46971 * 55.06858 * 13 12 11 40 40 H 1.08993 * 109.47107 * 175.06534 * 13 12 11 41 41 H 1.09005 * 109.46852 * 299.99770 * 14 13 12 42 42 H 1.08997 * 109.47060 * 59.99743 * 14 13 12 43 43 H 0.96998 * 120.00372 * 359.97438 * 15 14 13 44 44 H 0.97000 * 119.99884 * 180.02562 * 19 18 16 45 45 H 1.09002 * 109.49846 * 301.41634 * 24 12 11 46 46 H 1.09000 * 109.52498 * 181.33721 * 24 12 11 47 47 H 1.09003 * 109.58362 * 353.37346 * 25 9 7 48 48 H 1.08991 * 109.58578 * 113.65579 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2690 1.1136 0.0000 4 7 3.5065 0.7353 -0.0005 5 7 3.5343 -0.6662 -0.0015 6 6 4.7313 -1.5109 -0.0029 7 6 5.1411 -1.7991 -1.4242 8 8 4.4965 -1.3441 -2.3453 9 7 6.2233 -2.5632 -1.6718 10 6 7.0171 -3.1174 -0.5665 11 6 7.1350 -4.6365 -0.7633 12 6 7.7082 -4.9219 -2.1532 13 6 7.8630 -6.4326 -2.3403 14 6 8.9046 -6.9646 -1.3539 15 7 9.0523 -8.4111 -1.5327 16 6 9.9358 -9.1105 -0.7545 17 1 10.5240 -8.5955 -0.0092 18 6 10.0762 -10.4810 -0.9242 19 7 9.3597 -11.1084 -1.8327 20 14 11.2819 -11.4349 0.1369 21 1 11.9601 -10.5042 1.0745 22 1 10.5496 -12.4702 0.9096 23 1 12.2948 -12.0885 -0.7303 24 6 6.7606 -4.3704 -3.2209 25 6 6.6350 -2.8534 -3.0520 26 6 2.2542 -1.0930 -0.0005 27 8 1.8805 -2.2524 -0.0001 28 1 -0.3634 1.0277 0.0005 29 1 -0.3634 -0.5134 -0.8902 30 1 -0.3634 -0.5143 0.8897 31 1 1.9249 2.1373 0.0007 32 1 5.5416 -0.9938 0.5111 33 1 4.5152 -2.4481 0.5101 34 1 8.0100 -2.6677 -0.5685 35 1 6.5206 -2.9077 0.3810 36 1 6.1500 -5.0947 -0.6748 37 1 7.7984 -5.0505 -0.0040 38 1 8.6823 -4.4425 -2.2496 39 1 6.9061 -6.9213 -2.1569 40 1 8.1880 -6.6410 -3.3596 41 1 9.8615 -6.4759 -1.5373 42 1 8.5795 -6.7561 -0.3347 43 1 8.5244 -8.8735 -2.2022 44 1 9.4576 -12.0662 -1.9511 45 1 5.7791 -4.8312 -3.1093 46 1 7.1574 -4.5947 -4.2111 47 1 5.8863 -2.4695 -3.7450 48 1 7.5961 -2.3806 -3.2537 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568089033.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:39 Heat of formation + Delta-G solvation = 23.693923 kcal Electronic energy + Delta-G solvation = -28989.949262 eV Core-core repulsion = 24889.504246 eV Total energy + Delta-G solvation = -4100.445016 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.73664 -40.38807 -38.03580 -37.51787 -35.61809 -35.32140 -33.62945 -32.42097 -31.35281 -30.95760 -28.98752 -28.24387 -27.16708 -25.00207 -23.60260 -23.22568 -22.78468 -21.79392 -21.06529 -20.31055 -19.30070 -18.03975 -17.74834 -17.01933 -16.73908 -16.50110 -16.19046 -15.74765 -15.44293 -14.96124 -14.76335 -14.57723 -14.30057 -14.03567 -13.88105 -13.72041 -13.53752 -13.24912 -13.13480 -13.01860 -12.81344 -12.68769 -12.47012 -12.25311 -12.21424 -11.37164 -11.27908 -11.14826 -10.99963 -10.85109 -10.77999 -10.60804 -10.56273 -10.29746 -10.19514 -9.91874 -9.90236 -9.65970 -8.87349 -8.86041 -8.82142 -6.88825 -5.74497 -3.02965 1.30920 1.61183 2.31208 2.35989 2.66561 2.89560 3.44268 3.49379 3.52031 4.00007 4.11758 4.33659 4.50412 4.56821 4.59746 4.72912 4.79801 4.80293 4.81345 4.97047 4.98460 5.05455 5.14369 5.20974 5.38192 5.44862 5.56313 5.59776 5.67596 5.69312 5.73653 5.82352 5.85391 6.03906 6.06584 6.12997 6.18921 6.35670 6.37845 6.43817 6.47567 6.89180 6.94287 7.11140 7.25426 7.71672 7.72096 7.88518 8.44762 9.55460 10.15177 10.49097 11.48617 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022097 B = 0.001874 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.847935 B =14941.239748 C =15387.856933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.562 5.562 3 C 0.256 3.744 4 N -0.275 5.275 5 N -0.438 5.438 6 C 0.144 3.856 7 C 0.500 3.500 8 O -0.532 6.532 9 N -0.606 5.606 10 C 0.103 3.897 11 C -0.134 4.134 12 C -0.081 4.081 13 C -0.121 4.121 14 C 0.153 3.847 15 N -0.735 5.735 16 C -0.238 4.238 17 H 0.070 0.930 18 C -0.017 4.017 19 N -0.934 5.934 20 Si 0.907 3.093 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.129 4.129 25 C 0.114 3.886 26 C 0.652 3.348 27 O -0.548 6.548 28 H 0.093 0.907 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.232 0.768 32 H 0.125 0.875 33 H 0.126 0.874 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.016 0.984 42 H 0.019 0.981 43 H 0.383 0.617 44 H 0.254 0.746 45 H 0.067 0.933 46 H 0.077 0.923 47 H 0.089 0.911 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.206 30.017 4.062 33.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.291 5.291 3 C -0.044 4.044 4 N -0.096 5.096 5 N -0.258 5.258 6 C 0.019 3.981 7 C 0.286 3.714 8 O -0.408 6.408 9 N -0.341 5.341 10 C -0.019 4.019 11 C -0.172 4.172 12 C -0.101 4.101 13 C -0.159 4.159 14 C 0.025 3.975 15 N -0.379 5.379 16 C -0.369 4.369 17 H 0.088 0.912 18 C -0.212 4.212 19 N -0.583 5.583 20 Si 0.738 3.262 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.168 4.168 25 C -0.008 4.008 26 C 0.351 3.649 27 O -0.421 6.421 28 H 0.112 0.888 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.248 0.752 32 H 0.143 0.857 33 H 0.144 0.856 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.034 0.966 42 H 0.037 0.963 43 H 0.216 0.784 44 H 0.064 0.936 45 H 0.086 0.914 46 H 0.095 0.905 47 H 0.107 0.893 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.680 29.637 3.701 33.280 hybrid contribution -0.188 -1.014 0.280 1.069 sum -14.868 28.622 3.981 32.498 Atomic orbital electron populations 1.21812 0.74020 1.04152 1.04063 1.45868 1.08901 1.06616 1.67710 1.25937 0.85784 0.94722 0.97914 1.76971 1.18318 0.91440 1.22868 1.48210 1.05438 1.03154 1.69036 1.21287 0.85761 0.95350 0.95721 1.20842 0.80365 0.78625 0.91551 1.90712 1.52834 1.51305 1.45924 1.48125 1.27690 1.50166 1.08115 1.22009 0.96091 0.95128 0.88704 1.22149 1.02637 0.93864 0.98533 1.21074 0.98472 0.96682 0.93833 1.21764 1.00298 0.93352 1.00507 1.20697 0.94931 0.86180 0.95646 1.42404 1.49161 1.01841 1.44504 1.19287 1.14647 0.90229 1.12760 0.91163 1.24761 1.00321 0.96662 0.99492 1.69676 1.43694 1.08645 1.36247 0.86112 0.80496 0.80001 0.79569 1.20566 1.21884 1.21888 1.21984 1.00714 0.94265 0.99797 1.21633 1.00675 0.96197 0.82328 1.16652 0.81884 0.85108 0.81258 1.91112 1.77580 1.15243 1.58162 0.88803 0.90422 0.90386 0.75234 0.85670 0.85613 0.90518 0.90062 0.91204 0.89459 0.90911 0.92002 0.91893 0.96641 0.96291 0.78355 0.93589 0.91446 0.90468 0.89282 0.91290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.42 11.08 59.84 0.66 1.08 16 2 N -0.56 -4.61 3.14 -130.11 -0.41 -5.02 16 3 C 0.26 1.55 12.61 -89.12 -1.12 0.43 16 4 N -0.28 -2.67 12.53 29.87 0.37 -2.29 16 5 N -0.44 -5.10 3.11 -66.31 -0.21 -5.31 16 6 C 0.14 1.41 5.21 -5.20 -0.03 1.38 16 7 C 0.50 6.26 7.77 -10.99 -0.09 6.17 16 8 O -0.53 -8.79 15.84 5.55 0.09 -8.70 16 9 N -0.61 -6.48 2.97 -172.52 -0.51 -7.00 16 10 C 0.10 0.86 6.37 -3.48 -0.02 0.84 16 11 C -0.13 -1.44 5.16 -26.39 -0.14 -1.57 16 12 C -0.08 -0.98 2.15 -90.58 -0.19 -1.17 16 13 C -0.12 -1.92 4.80 -26.73 -0.13 -2.05 16 14 C 0.15 3.03 6.02 -4.04 -0.02 3.00 16 15 N -0.74 -18.99 5.60 -59.91 -0.34 -19.32 16 16 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 17 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 18 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 19 N -0.93 -28.76 13.06 55.49 0.72 -28.03 16 20 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 24 C -0.13 -1.46 5.36 -26.63 -0.14 -1.60 16 25 C 0.11 1.23 6.43 -3.73 -0.02 1.21 16 26 C 0.65 8.39 8.60 -86.74 -0.75 7.64 16 27 O -0.55 -9.02 17.76 5.09 0.09 -8.93 16 28 H 0.09 0.01 8.07 -51.93 -0.42 -0.41 16 29 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.23 0.04 8.06 -52.49 -0.42 -0.39 16 32 H 0.13 0.82 7.93 -51.93 -0.41 0.41 16 33 H 0.13 1.10 7.67 -51.93 -0.40 0.70 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.49 5.93 -51.93 -0.31 0.19 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.09 0.96 6.50 -51.93 -0.34 0.62 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.02 0.37 6.53 -51.93 -0.34 0.03 16 43 H 0.38 10.44 7.67 -40.82 -0.31 10.13 16 44 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 45 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 46 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 47 H 0.09 1.09 7.01 -51.93 -0.36 0.73 16 48 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 393.01 15.07 5.92 5.92 Total: -1.00 -40.62 393.01 -9.04 -49.65 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -7.51 Total: 3.54 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: -2.24 Total: 7.87 kcal Atomic # 7 Polarization: -66.61 SS G_CDS: -0.36 Total: -66.97 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: 0.18 Total: -17.63 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -40.62 -9.04 -49.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568089033.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.345 kcal (2) G-P(sol) polarization free energy of solvation -40.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds